Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004227

Physical Location & Seq

Genomic Coordinates Forward (+)

11220112 .. 11220971

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G188400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTTAAGGAAATTAAAACTGAAGCAGTAGTGAAAGTTGGGATTGAAGCCTTGTGGAAAGCTTTGGTAAAATATGTGAGATTTGTGGCACCAAAACTCATCCCACTGGTCAAGAATGTACAAATGCTAGAAGGAGATGGTGGCCTTGGCACAGTCTTGCTCTCCAATTTTGGCTCTGATATACCAAAGATAAGTTCTTCCAAGGAGAAGATTGTGGAGCTTGATGAGTCTCTGCATAAAATTGGGCTGCAAGTCATAGAAGGGGGCCATTTGAATCTTGGGTTTTCTTCATACAGAACAACTTTCCAACTTACTGCAATTCGGGAGCAGCGCAGCCTGGTCAGTATCATGATCACCTATGAGTCTGAAGTGGAGGATAGTGGCATACCGTCAACGATAAACATGTCTTCTTTCAATTTCATCAGGAACCTAGAATCTTATTTGTTGAATGATGCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

154

Amino Acids

16.95

Weight (kDa)

5.72

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004227)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20810 FvH4_3g20810 FvH4_3g20820
malus_domestica	MD03G1220400.v1.1 MD03G1220500.v1.1 MD11G1238400.v1.1
prunus_persica	Prupe.4G188200_v2.0.a1 Prupe.4G188300_v2.0.a1 Prupe.4G188400_v2.0.a1
pyrus_communis	pycom11g21000
rosa_chinensis	RchiOBHm_Chr5g0035101 RchiOBHm_Chr5g0035111
rosa_laevigata	RLG00000033596 RLG00000033597 RLG00000033598
rosa_multiflora	Rmu_co8030986.1_g000001 Rmu_sc0000879.1_g000009 Rmu_sc0000879.1_g000011 Rmu_sc0005362.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045280 Rroxscaffold_1G00045300
rosa_rugosa	Rorug05G0149900 Rorug05G0150000 Rorug05G0150100
rosa_samantha	Rh5AG242900 Rh5BG242400 Rh5BG242500 Rh5CG273900 Rh5CG274000 Rh5CG274100 Rh5DG251000 Rh5DG251100
rosa_wichuraiana	Rw5G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AcuI	CTGAAG	2 cut(s)	42, 387
AfaI	GTAC	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	47, 274, 415, 448
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	2 cut(s)	62, 220
AluI	AGCT	2 cut(s)	62, 220
Alw26I	GTCTC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	142, 265
ApeKI	GCWGC	3 cut(s)	247, 328, 333
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	234, 340, 345
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	3 cut(s)	128, 431, 460
BisI	GCNGC	3 cut(s)	248, 329, 334
BlsI	GCNGC	3 cut(s)	249, 330, 335
Bme1390I	CCNGG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	90, 266, 428
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	145, 201
Bse1I	ACTGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	145, 201
BseGI	GGATG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	3 cut(s)	234, 340, 345
BshFI	GGCC	2 cut(s)	144, 267
BshNI	GGYRCC	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	144, 267
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	351
BspANI	GGCC	2 cut(s)	144, 267
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	90, 266, 428
BspT107I	GGYRCC	1 cut(s)	88
BsrGI	TGTACA	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	145, 201
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	145, 201
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	154, 390
BstAUI	TGTACA	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	234, 340, 345
BstV2I	GAAGAC	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	144, 267
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	104
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	349, 403
CviJI	RGCY	8 cut(s)	50, 62, 144, 174, 220, 247, 267, 336
CviKI_1	RGCY	8 cut(s)	50, 62, 144, 174, 220, 247, 267, 336
CviQI	GTAC	1 cut(s)	119
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	145, 201
Eco57I	CTGAAG	2 cut(s)	42, 387
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	145, 201
ErhI	CCWWGG	2 cut(s)	145, 201
FaeI	CATG	2 cut(s)	352, 406
FaiI	YATR	9 cut(s)	75, 182, 237, 257, 292, 350, 360, 386, 404
FatI	CATG	2 cut(s)	348, 402
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	248, 329, 334
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	248, 329, 334
FspBI	CTAG	3 cut(s)	128, 431, 460
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	3 cut(s)	248, 329, 334
HaeIII	GGCC	2 cut(s)	144, 267
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	352, 406
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	4 cut(s)	227, 274, 362, 434
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	2 cut(s)	178, 367
Hpy188III	TCNNGA	4 cut(s)	112, 323, 349, 424
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	125, 254
HpyCH4III	ACNGT	2 cut(s)	154, 390
HpyCH4V	TGCA	3 cut(s)	235, 250, 317
Hsp92II	CATG	2 cut(s)	352, 406
HspAI	GCGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	217, 325
LpnPI	CCDG	4 cut(s)	92, 323, 350, 409
Lsp1109I	GCAGC	3 cut(s)	234, 340, 345
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	128, 431, 460
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	4 cut(s)	189, 220, 279, 399
MluCI	AATT	5 cut(s)	12, 166, 240, 318, 415
MlyI	GAGTC	2 cut(s)	236, 371
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	1 cut(s)	367
MseI	TTAA	2 cut(s)	6, 15
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	2 cut(s)	352, 406
NlaIV	GGNNCC	3 cut(s)	90, 266, 428
NspI	RCATGY	1 cut(s)	406
PagI	TCATGA	1 cut(s)	348
PciI	ACATGT	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	274, 434
PkrI	GCNGC	3 cut(s)	249, 330, 335
PleI	GAGTC	2 cut(s)	235, 370
PpsI	GAGTC	2 cut(s)	235, 370
PscI	ACATGT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	90, 266, 428
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	6, 15
SatI	GCNGC	3 cut(s)	248, 329, 334
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	236, 371
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	5 cut(s)	64, 222, 359, 432, 461
SfaNI	GCATC	1 cut(s)	442
Sse9I	AATT	5 cut(s)	12, 166, 240, 318, 415
SspMI	CTAG	3 cut(s)	128, 431, 460
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	145, 201
TaaI	ACNGT	2 cut(s)	154, 390
TasI	AATT	5 cut(s)	12, 166, 240, 318, 415
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	274, 434
Tru1I	TTAA	2 cut(s)	6, 15
Tru9I	TTAA	2 cut(s)	6, 15
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	3 cut(s)	247, 328, 333
TspDTI	ATGAA	2 cut(s)	279, 409
TspRI	CASTG	1 cut(s)	111
XceI	RCATGY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	3 cut(s)	128, 431, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.