Rroxscaffold_1G00045280

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004227
Physical Location & Seq
Reverse (-)
64281150 .. 64289211
8062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045280.1

Sequence Viewer

Length: 315 bp
ATGTCTTGTTCTTTTTTATCGGGGACGATCTTAGATGCTTATAAGATAAACTACCAGAAGGAAAAGATTGTGGAGCTCGATGAATCCGTGCACAGAATTGGGCTGCAAATGATAGGAGGCCACTTGAACCATGGGTTTTCTTCATACAAAACAAGTTTCCAACTTACTGCAATTCAAGAGCAGGAGATCCTGGTTAGTTTCACAGTGACCTATGAGTCTGAAGTTGAAGATACTACCATGCCATCAAGGTCAACCCAAGCTGCTGTAGCTTTCATCAGGAGCCTAGAGTCCTATTTGTTAAGTGCTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

104

Amino Acids

11.57

Weight (kDa)

5.0

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 15 - 101 8e-11 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AasI GACNNNNNNGTC 1 cut(s) 214
AclWI GGATC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 240
AgsI TTSAA 3 cut(s) 127, 176, 227
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 3 cut(s) 76, 260, 269
AluI AGCT 3 cut(s) 76, 260, 269
Alw21I GWGCWC 2 cut(s) 78, 93
Alw44I GTGCAC 1 cut(s) 89
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 118
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 4 cut(s) 103, 260, 305, 308
BaeGI GKGCMC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 78, 93
BbvI GCAGC 4 cut(s) 90, 247, 292, 295
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 191
BfaI CTAG 2 cut(s) 284, 313
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 4 cut(s) 104, 261, 306, 309
BlsI GCNGC 4 cut(s) 105, 262, 307, 310
Bme1390I CCNGG 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 4 cut(s) 90, 247, 292, 295
BshFI GGCC 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 78, 93
BslFI GGGAC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 78, 93
Bsp143I GATC 2 cut(s) 27, 186
Bsp19I CCATGG 1 cut(s) 130
BspANI GGCC 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 27, 186
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 31
BstDSI CCRYGG 1 cut(s) 130
BstKTI GATC 2 cut(s) 30, 189
BstMBI GATC 2 cut(s) 27, 186
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 90, 247, 292, 295
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 210
CviAII CATG 2 cut(s) 131, 238
CviJI RGCY 6 cut(s) 76, 103, 120, 260, 269, 282
CviKI_1 RGCY 6 cut(s) 76, 103, 120, 260, 269, 282
DdeI CTNAG 1 cut(s) 31
DpnI GATC 2 cut(s) 29, 188
DpnII GATC 2 cut(s) 27, 186
DrdI GACNNNNNNGTC 1 cut(s) 214
DseDI GACNNNNNNGTC 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 2 cut(s) 134, 241
FaiI YATR 5 cut(s) 42, 132, 145, 213, 239
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 130, 237
Fnu4HI GCNGC 4 cut(s) 104, 261, 306, 309
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 4 cut(s) 104, 261, 306, 309
FspBI CTAG 2 cut(s) 284, 313
GluI GCNGC 4 cut(s) 104, 261, 306, 309
HaeIII GGCC 1 cut(s) 120
Hin1II CATG 2 cut(s) 134, 241
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 3 cut(s) 83, 215, 287
Hpy166II GTNNAC 2 cut(s) 91, 252
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 176, 277
Hpy8I GTNNAC 2 cut(s) 91, 252
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 3 cut(s) 91, 106, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 31
Hsp92II CATG 2 cut(s) 134, 241
Kzo9I GATC 2 cut(s) 27, 186
LmnI GCTCC 2 cut(s) 73, 279
LpnPI CCDG 5 cut(s) 68, 167, 176, 203, 262
Lsp1109I GCAGC 4 cut(s) 90, 247, 292, 295
LweI GCATC 1 cut(s) 25
MaeI CTAG 2 cut(s) 284, 313
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 29, 188
MboI GATC 2 cut(s) 27, 186
MboII GAAGA 2 cut(s) 132, 239
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 2 cut(s) 78, 93
MluCI AATT 2 cut(s) 96, 171
MlyI GAGTC 2 cut(s) 224, 296
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 1 cut(s) 110
MseI TTAA 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 266
NcoI CCATGG 1 cut(s) 130
NdeII GATC 2 cut(s) 27, 186
NlaIII CATG 2 cut(s) 134, 241
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 4 cut(s) 105, 262, 307, 310
PleI GAGTC 2 cut(s) 223, 295
PpsI GAGTC 2 cut(s) 223, 295
PsiI TTATAA 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 281
PsuI RGATCY 1 cut(s) 186
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 4 cut(s) 104, 261, 306, 309
Sau3AI GATC 2 cut(s) 27, 186
SchI GAGTC 2 cut(s) 224, 296
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 2 cut(s) 78, 93
SetI ASST 5 cut(s) 78, 212, 251, 262, 271
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 264
Sse9I AATT 2 cut(s) 96, 171
SspMI CTAG 2 cut(s) 284, 313
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 96, 171
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 103, 260, 305, 308
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 96, 132, 262
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 2 cut(s) 284, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.