RchiOBHm_Chr5g0035111

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004227
Physical Location & Seq
Forward (+)
29020251 .. 29021974
1724 bp
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UTR
Exon/CDS
Intron
PRQ31403

Sequence Viewer

Length: 336 bp
ATGGTACCGGCAACGGTACAGTCTTGCTCTTCAGCTTTGGCACTGGTGAATGCATCAAAGATAATTTACCAGAAGGAGAAGATTAATGTGGAGCTTGATGAGTCTGTGCATAAAATTGGGCTGCAAGTAATAGAAGGAGGCCACTTGAACCATGGGTTTTCTTCATACAAAAGAAGTTTCCAACTTACTGCAATTCAAGAGCAGGAGATCCTGGTTAGTTTCACAGTGACCTATGAGTCTGAAGTTGAAGATACTACCATGCCATCAAGGTCAACCCAAGCTGCTGTAGCTTTCATCAGGAGCCTAGAGTCCTATTTGTTAAGGGCTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

111

Amino Acids

12.22

Weight (kDa)

5.54

Isoelectric Point (pI)

67.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 16 - 108 9.6e-09 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 235
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 1 cut(s) 202
AcuI CTGAAG 2 cut(s) 15, 261
AfaI GTAC 2 cut(s) 6, 18
AgsI TTSAA 3 cut(s) 148, 197, 248
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 4 cut(s) 35, 94, 281, 290
AluI AGCT 4 cut(s) 35, 94, 281, 290
AlwI GGATC 1 cut(s) 202
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 4 cut(s) 121, 281, 326, 329
AseI ATTAAT 1 cut(s) 84
Asp718I GGTACC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 58
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 4 cut(s) 108, 268, 313, 316
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 212
BfaI CTAG 2 cut(s) 305, 334
BfmI CTRYAG 1 cut(s) 285
BisI GCNGC 4 cut(s) 122, 282, 327, 330
BlsI GCNGC 4 cut(s) 123, 283, 328, 331
Bme1390I CCNGG 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 6, 302
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 108, 268, 313, 316
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 8
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 207
Bsp19I CCATGG 1 cut(s) 151
BspANI GGCC 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 6, 302
BspPI GGATC 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 16, 21, 226
Bst6I CTCTTC 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 151
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 4 cut(s) 108, 268, 313, 316
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 41, 231
Cfr10I RCCGGY 1 cut(s) 7
Csp6I GTAC 2 cut(s) 5, 17
CviAII CATG 2 cut(s) 152, 259
CviJI RGCY 8 cut(s) 35, 94, 121, 141, 281, 290, 303, 326
CviKI_1 RGCY 8 cut(s) 35, 94, 121, 141, 281, 290, 303, 326
CviQI GTAC 2 cut(s) 5, 17
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 15, 261
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 155, 262
FaiI YATR 5 cut(s) 111, 153, 166, 234, 260
FatI CATG 2 cut(s) 151, 258
Fnu4HI GCNGC 4 cut(s) 122, 282, 327, 330
Fsp4HI GCNGC 4 cut(s) 122, 282, 327, 330
FspBI CTAG 2 cut(s) 305, 334
GluI GCNGC 4 cut(s) 122, 282, 327, 330
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 8
Hin1II CATG 2 cut(s) 155, 262
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 3 cut(s) 101, 236, 308
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 197, 298
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 67, 128
HpyCH4III ACNGT 3 cut(s) 16, 21, 226
HpyCH4V TGCA 4 cut(s) 53, 109, 124, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
Hsp92II CATG 2 cut(s) 155, 262
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 207
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 91, 300
LpnPI CCDG 7 cut(s) 21, 29, 83, 188, 197, 224, 283
Lsp1109I GCAGC 4 cut(s) 108, 268, 313, 316
LweI GCATC 1 cut(s) 62
MaeI CTAG 2 cut(s) 305, 334
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 4 cut(s) 21, 91, 153, 260
MflI RGATCY 1 cut(s) 207
MluCI AATT 3 cut(s) 63, 114, 192
MlyI GAGTC 3 cut(s) 110, 245, 317
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 55
MseI TTAA 2 cut(s) 84, 320
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 287
NcoI CCATGG 1 cut(s) 151
NdeII GATC 1 cut(s) 207
NlaIII CATG 2 cut(s) 155, 262
NlaIV GGNNCC 2 cut(s) 6, 302
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 34
PctI GAATGC 1 cut(s) 55
PkrI GCNGC 4 cut(s) 123, 283, 328, 331
PleI GAGTC 3 cut(s) 109, 244, 316
PpsI GAGTC 3 cut(s) 109, 244, 316
PshBI ATTAAT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 6, 302
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 2 cut(s) 6, 18
RsaNI GTAC 2 cut(s) 5, 17
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 84, 320
SatI GCNGC 4 cut(s) 122, 282, 327, 330
Sau3AI GATC 1 cut(s) 207
SchI GAGTC 3 cut(s) 110, 245, 317
ScrFI CCNGG 1 cut(s) 212
SetI ASST 6 cut(s) 37, 96, 233, 272, 283, 292
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 1 cut(s) 285
Sse9I AATT 3 cut(s) 63, 114, 192
SspMI CTAG 2 cut(s) 305, 334
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 16, 21, 226
TasI AATT 3 cut(s) 63, 114, 192
Tru1I TTAA 2 cut(s) 84, 320
Tru9I TTAA 2 cut(s) 84, 320
TscAI CASTG 2 cut(s) 48, 231
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 4 cut(s) 121, 281, 326, 329
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 153, 283
TspRI CASTG 2 cut(s) 48, 231
VspI ATTAAT 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 2 cut(s) 305, 334
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.