Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004227

Physical Location & Seq

Genomic Coordinates Reverse (-)

13910300 .. 13911385

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0150000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGTTTCATCTCCTGACTGGGCTTGGCTCCCAAGCGACCTTCTGGATTCGATACTAGAAAAATTGATACCAATCACTGACTACATCCGGTTCGGTGCAGTTTGCAAGCATTGGCAATCCGCGGCGTCGCATCAGAAAGAGCATCGCATGAAATCATGTCACAAACAGCTTCCTATGCTCATGGAGATTACTAGAAACTACAAAGACGAAGGCCGGGTTGACGCCTTGTTTAGTGTGGCACAAGGAGGTAAGCTGAGGCAGTTGAACTATATGCCTTATTACATTAAGAACAAGCAGCCTTTTTCTGGGATGACGTGGTGCGGTTCCACACATGGTTGGTTGGTTTATGATGAAAGCAATTCTGTACTGACCTTGTTGAACCCTTTCACCAGGCATACCATTACTCTTCCACCACTCAGAGAACCCACAGATGCAAGGGCTTTTATTCATTGGGTTAAATTGTCGGCTGACCCATGTTTGTGTCCTAATGATTATGAAGTTCTAGTACGATACAATAGTATAGAGTTTGATTCGGTAACCAGTCTAGCATATTTTAGATCAGGGGATGATACTTGGACTCAAATAGGTGATGAAAGTTTCGCCAGCAAAGTTAGTGATGCAGTTTATTATAAAGGCCAGTTTGTTGCTCTTACCCGTTCGGAATTGCCGGCCAACTTTACCATTAACTTTAGCAGCATACCAACTACCAAATTCGAATCTCATGATCCATATTCACCTTATATGATCTCCGAATATATTCTCGAATCTTCCGGGGGAGATTTATTGTTGGTTAAGAGGATTGAAGTATCTATGACGTCTAAGAAGTGCATACAAGTTTTCAAATTGTTGCATGCAGATGGGGATATGCCTAGATGGGTAGCGATTAAGAGTATTGGAAGTGATGTTTTGTTTTTGTGTATCCGTTCAGCTATGAGTGTATCCGCATTAGACTTTCCACAGTGTGTTCCGAATTCCTTATACTTCACAGACGGTGTCTTCAATTTGGAGAAAACGGAGGAATGGATTGAAAAAGACACTTCAGGATTGTACAACTCACTATTATGGGTTTCTCCCACTATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

361

Amino Acids

41.18

Weight (kDa)

5.87

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	10 - 44	8.6e-06	F-box-like
Beta-prop_KIB1-4	PF03478	95 - 343	2.5e-43	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004227)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20810 FvH4_3g20810 FvH4_3g20820
malus_domestica	MD03G1220400.v1.1 MD03G1220500.v1.1 MD11G1238400.v1.1
prunus_persica	Prupe.4G188200_v2.0.a1 Prupe.4G188300_v2.0.a1 Prupe.4G188400_v2.0.a1
pyrus_communis	pycom11g21000
rosa_chinensis	RchiOBHm_Chr5g0035101 RchiOBHm_Chr5g0035111
rosa_laevigata	RLG00000033596 RLG00000033597 RLG00000033598
rosa_multiflora	Rmu_co8030986.1_g000001 Rmu_sc0000879.1_g000009 Rmu_sc0000879.1_g000011 Rmu_sc0005362.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045280 Rroxscaffold_1G00045300
rosa_rugosa	Rorug05G0149900 Rorug05G0150000 Rorug05G0150100
rosa_samantha	Rh5AG242900 Rh5BG242400 Rh5BG242500 Rh5CG273900 Rh5CG274000 Rh5CG274100 Rh5DG251000 Rh5DG251100
rosa_wichuraiana	Rw5G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AatII	GACGTC	1 cut(s)	818
AccII	CGCG	1 cut(s)	122
AciI	CCGC	4 cut(s)	120, 122, 321, 942
AclWI	GGATC	1 cut(s)	719
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	2 cut(s)	710, 970
AcuI	CTGAAG	1 cut(s)	1023
AcyI	GRCGYC	3 cut(s)	125, 222, 815
AdeI	CACNNNGTG	1 cut(s)	962
AfaI	GTAC	3 cut(s)	366, 507, 1049
AfiI	CCNNNNNNNGG	2 cut(s)	305, 1080
AgsI	TTSAA	6 cut(s)	265, 379, 803, 841, 1000, 1028
AjiI	CACGTC	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	3 cut(s)	169, 253, 929
AluI	AGCT	3 cut(s)	169, 253, 929
AlwI	GGATC	1 cut(s)	719
AoxI	GGCC	3 cut(s)	211, 634, 669
ApeKI	GCWGC	2 cut(s)	295, 693
ApoI	RAATTY	2 cut(s)	710, 970
Asp700I	GAANNNNTTC	2 cut(s)	383, 756
AsuC2I	CCSGG	2 cut(s)	215, 772
AsuHPI	GGTGA	3 cut(s)	379, 599, 726
AsuII	TTCGAA	1 cut(s)	714
BaeI	ACNNNNGTAYC	2 cut(s)	502, 535
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BbsI	GAAGAC	1 cut(s)	988
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	307, 705
BccI	CCATC	2 cut(s)	851, 867
BciT130I	CCWGG	1 cut(s)	391
BciVI	GTATCC	2 cut(s)	929, 949
BcnI	CCSGG	2 cut(s)	215, 772
BfaI	CTAG	5 cut(s)	56, 192, 503, 545, 870
BfuI	GTATCC	2 cut(s)	929, 949
BisI	GCNGC	3 cut(s)	123, 296, 694
BlsI	GCNGC	3 cut(s)	124, 297, 695
Bme1390I	CCNGG	3 cut(s)	215, 391, 772
BmgBI	CACGTC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	29, 325
BmrFI	CCNGG	3 cut(s)	215, 391, 772
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	4 cut(s)	139, 151, 421, 607
BmuI	ACTGGG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	988
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	714
BpuMI	CCSGG	2 cut(s)	215, 772
BsaBI	GATNNNNATC	1 cut(s)	71
BsaHI	GRCGYC	3 cut(s)	125, 222, 815
BsaJI	CCNNGG	2 cut(s)	120, 771
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 1080
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	3 cut(s)	23, 540, 637
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	120, 771
BseGI	GGATG	3 cut(s)	84, 315, 571
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	305, 1080
BseMII	CTCAG	2 cut(s)	245, 430
BseNI	ACTGG	3 cut(s)	23, 540, 637
BseXI	GCAGC	2 cut(s)	307, 705
BsgI	GTGCAG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	213, 636, 671
BsiSI	CCGG	4 cut(s)	88, 214, 668, 771
BslI	CCNNNNNNNGG	2 cut(s)	305, 1080
BsnI	GGCC	3 cut(s)	213, 636, 671
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1407I	TGTACA	1 cut(s)	1047
Bsp143I	GATC	3 cut(s)	557, 724, 744
BspACI	CCGC	4 cut(s)	120, 122, 321, 942
BspANI	GGCC	3 cut(s)	213, 636, 671
BspCNI	CTCAG	2 cut(s)	246, 429
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	721
BspLI	GGNNCC	2 cut(s)	29, 325
BspPI	GGATC	1 cut(s)	719
BspT104I	TTCGAA	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	667
BsrGI	TGTACA	1 cut(s)	1047
BsrI	ACTGG	3 cut(s)	23, 540, 637
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	2 cut(s)	120, 771
BssMI	GATC	3 cut(s)	557, 724, 744
BssNI	GRCGYC	3 cut(s)	125, 222, 815
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	2 cut(s)	960, 992
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	3 cut(s)	125, 222, 815
BstAUI	TGTACA	1 cut(s)	1047
BstBI	TTCGAA	1 cut(s)	714
BstC8I	GCNNGC	4 cut(s)	107, 604, 669, 852
BstDEI	CTNAG	3 cut(s)	254, 416, 819
BstDSI	CCRYGG	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	535
BstF5I	GGATG	3 cut(s)	84, 315, 571
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	3 cut(s)	560, 727, 747
BstMBI	GATC	3 cut(s)	557, 724, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	1 cut(s)	854
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	3 cut(s)	213, 389, 770
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	307, 705
BstV2I	GAAGAC	1 cut(s)	988
BsuI	GTATCC	2 cut(s)	929, 949
BsuRI	GGCC	3 cut(s)	213, 636, 671
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	84, 315, 571
BtsIMutI	CAGTG	2 cut(s)	75, 965
Cac8I	GCNNGC	4 cut(s)	107, 604, 669, 852
CciI	TCATGA	1 cut(s)	721
Cfr10I	RCCGGY	1 cut(s)	667
Cfr42I	CCGCGG	1 cut(s)	123
CseI	GACGC	2 cut(s)	114, 230
Csp6I	GTAC	3 cut(s)	365, 506, 1048
CviAII	CATG	7 cut(s)	148, 156, 181, 332, 474, 722, 851
CviQI	GTAC	3 cut(s)	365, 506, 1048
DdeI	CTNAG	3 cut(s)	254, 416, 819
DpnI	GATC	3 cut(s)	559, 726, 746
DpnII	GATC	3 cut(s)	557, 724, 744
DraIII	CACNNNGTG	1 cut(s)	962
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	1023
Eco91I	GGTNACC	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	389
FaeI	CATG	7 cut(s)	151, 159, 184, 335, 477, 725, 854
FatI	CATG	7 cut(s)	147, 155, 180, 331, 473, 721, 850
Fnu4HI	GCNGC	3 cut(s)	123, 296, 694
FokI	GGATG	3 cut(s)	71, 322, 578
Fsp4HI	GCNGC	3 cut(s)	123, 296, 694
FspBI	CTAG	5 cut(s)	56, 192, 503, 545, 870
GluI	GCNGC	3 cut(s)	123, 296, 694
HaeIII	GGCC	3 cut(s)	213, 636, 671
HapII	CCGG	4 cut(s)	88, 214, 668, 771
HgaI	GACGC	2 cut(s)	114, 230
Hin1I	GRCGYC	3 cut(s)	125, 222, 815
Hin1II	CATG	7 cut(s)	151, 159, 184, 335, 477, 725, 854
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	5 cut(s)	47, 530, 577, 716, 764
HpaII	CCGG	4 cut(s)	88, 214, 668, 771
HphI	GGTGA	3 cut(s)	379, 599, 726
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	135, 419, 661, 751, 969
Hpy188III	TCNNGA	5 cut(s)	14, 44, 722, 761, 1041
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	50, 203
HpyCH4III	ACNGT	2 cut(s)	960, 992
HpyCH4IV	ACGT	2 cut(s)	314, 815
HpyCH4V	TGCA	7 cut(s)	98, 105, 434, 620, 828, 850, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	3 cut(s)	254, 416, 819
HpySE526I	ACGT	2 cut(s)	314, 815
Hsp92I	GRCGYC	3 cut(s)	125, 222, 815
Hsp92II	CATG	7 cut(s)	151, 159, 184, 335, 477, 725, 854
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
KspI	CCGCGG	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	557, 724, 744
LmnI	GCTCC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	307, 705
LweI	GCATC	4 cut(s)	139, 151, 421, 607
MaeI	CTAG	5 cut(s)	56, 192, 503, 545, 870
MaeII	ACGT	2 cut(s)	314, 815
MaeIII	GTNAC	2 cut(s)	158, 535
MalI	GATC	3 cut(s)	559, 726, 746
MboI	GATC	3 cut(s)	557, 724, 744
MboII	GAAGA	3 cut(s)	398, 759, 988
MluCI	AATT	8 cut(s)	62, 358, 458, 662, 710, 842, 970, 1000
MlyI	GAGTC	1 cut(s)	571
MnlI	CCTC	4 cut(s)	239, 249, 789, 1009
MroNI	GCCGGC	1 cut(s)	667
MroXI	GAANNNNTTC	2 cut(s)	383, 756
MseI	TTAA	5 cut(s)	285, 456, 684, 792, 885
MslI	CAYNNNNRTG	3 cut(s)	478, 855, 1060
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	4 cut(s)	88, 214, 668, 771
MspR9I	CCNGG	3 cut(s)	215, 391, 772
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	175
NaeI	GCCGGC	1 cut(s)	669
NciI	CCSGG	2 cut(s)	215, 772
NdeII	GATC	3 cut(s)	557, 724, 744
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	7 cut(s)	151, 159, 184, 335, 477, 725, 854
NlaIV	GGNNCC	2 cut(s)	29, 325
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	854
NspV	TTCGAA	1 cut(s)	714
PaeI	GCATGC	1 cut(s)	854
PagI	TCATGA	1 cut(s)	721
PdiI	GCCGGC	1 cut(s)	669
PdmI	GAANNNNTTC	2 cut(s)	383, 756
PfeI	GAWTC	4 cut(s)	47, 530, 716, 764
PflFI	GACNNNGTC	1 cut(s)	992
PkrI	GCNGC	3 cut(s)	124, 297, 695
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PsiI	TTATAA	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	389
PspEI	GGTNACC	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	29, 325
PsyI	GACNNNGTC	1 cut(s)	992
RsaI	GTAC	3 cut(s)	366, 507, 1049
RsaNI	GTAC	3 cut(s)	365, 506, 1048
RseI	CAYNNNNRTG	3 cut(s)	478, 855, 1060
SacII	CCGCGG	1 cut(s)	123
SaqAI	TTAA	5 cut(s)	285, 456, 684, 792, 885
SatI	GCNGC	3 cut(s)	123, 296, 694
Sau3AI	GATC	3 cut(s)	557, 724, 744
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	3 cut(s)	215, 391, 772
SfaNI	GCATC	4 cut(s)	139, 151, 421, 607
Sfr303I	CCGCGG	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	714
SgrBI	CCGCGG	1 cut(s)	123
SmiMI	CAYNNNNRTG	3 cut(s)	478, 855, 1060
SphI	GCATGC	1 cut(s)	854
Sse9I	AATT	8 cut(s)	62, 358, 458, 662, 710, 842, 970, 1000
SsiI	CCGC	4 cut(s)	120, 122, 321, 942
SspMI	CTAG	5 cut(s)	56, 192, 503, 545, 870
StyD4I	CCNGG	3 cut(s)	213, 389, 770
TaaI	ACNGT	2 cut(s)	960, 992
TaiI	ACGT	2 cut(s)	317, 818
TaqI	TCGA	3 cut(s)	50, 714, 762
TasI	AATT	8 cut(s)	62, 358, 458, 662, 710, 842, 970, 1000
TatI	WGTACW	2 cut(s)	364, 1047
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	4 cut(s)	47, 530, 716, 764
Tru1I	TTAA	5 cut(s)	285, 456, 684, 792, 885
Tru9I	TTAA	5 cut(s)	285, 456, 684, 792, 885
TscAI	CASTG	2 cut(s)	82, 965
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	295, 693
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	5 cut(s)	164, 366, 437, 510, 606
TspGWI	ACGGA	2 cut(s)	911, 1028
TspRI	CASTG	2 cut(s)	82, 965
Tth111I	GACNNNGTC	1 cut(s)	992
XapI	RAATTY	2 cut(s)	710, 970
XceI	RCATGY	1 cut(s)	854
XmnI	GAANNNNTTC	2 cut(s)	383, 756
XspI	CTAG	5 cut(s)	56, 192, 503, 545, 870
ZraI	GACGTC	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.