Rmu_co8030986.1_g000001

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8030986.1
OG0004227
Physical Location & Seq
Reverse (-)
66 .. 546
481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8030986.1_g000001.1.cds

Sequence Viewer

Length: 329 bp
agggaaatggtggcctcgattctgttctgctcttcaaacttggccgtgatccaaaatccaagagacaacagacggagaagattgtggaactagatgagtctcagtatcgatttgcactgcaagtgttagaaggcccagcactgacattgcgtgatttttcttcattgacaactacgtttcagctaagtgcaatcagtgagaaggagaccctggttgatatgaaggtggaatataatactgaaaaagaagaaactaatatgggagagatagcaatgcagccagtgctttctttcgttcaactccttgagaaacttgtattagaatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

108

Amino Acids

12.18

Weight (kDa)

4.66

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 42
AgsI TTSAA 2 cut(s) 36, 298
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 57, 104, 199
AlwI GGATC 1 cut(s) 43
AoxI GGCC 3 cut(s) 12, 42, 132
ApeKI GCWGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 288
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 3 cut(s) 57, 104, 199
BfaI CTAG 1 cut(s) 91
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 2 cut(s) 145, 278
BseBI CCWGG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 209
BseMI GCAATG 2 cut(s) 145, 278
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 288
BseYI CCCAGC 1 cut(s) 135
BshFI GGCC 3 cut(s) 14, 44, 134
BshVI ATCGAT 1 cut(s) 108
BsmAI GTCTC 3 cut(s) 57, 104, 199
BsnI GGCC 3 cut(s) 14, 44, 134
Bso31I GGTCTC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 48
BspANI GGCC 3 cut(s) 14, 44, 134
BspCNI CTCAG 1 cut(s) 114
BspDI ATCGAT 1 cut(s) 108
BspPI GGATC 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 2 cut(s) 145, 278
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 101, 184
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 3 cut(s) 57, 104, 199
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 288
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 3 cut(s) 14, 44, 134
BsuTUI ATCGAT 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 4 cut(s) 115, 139, 201, 287
Cfr13I GGNCC 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 108
CviJI RGCY 5 cut(s) 14, 44, 134, 183, 279
CviKI_1 RGCY 5 cut(s) 14, 44, 134, 183, 279
DdeI CTNAG 2 cut(s) 101, 184
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 209
FaiI YATR 4 cut(s) 220, 233, 259, 327
Fnu4HI GCNGC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 277
FspBI CTAG 1 cut(s) 91
GluI GCNGC 1 cut(s) 277
GsaI CCCAGC 1 cut(s) 139
HaeIII GGCC 3 cut(s) 14, 44, 134
HinfI GANTC 3 cut(s) 19, 97, 322
HpyAV CCTTC 3 cut(s) 124, 195, 216
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 115, 120, 190, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 2 cut(s) 101, 184
HpySE526I ACGT 1 cut(s) 175
Kzo9I GATC 1 cut(s) 48
LguI GCTCTTC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 149, 196, 223, 293
Lsp1109I GCAGC 1 cut(s) 288
MaeI CTAG 1 cut(s) 91
MaeII ACGT 1 cut(s) 175
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 4 cut(s) 24, 90, 152, 259
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 282
NdeII GATC 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 19, 322
PkrI GCNGC 1 cut(s) 278
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 209
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 1 cut(s) 209
PspPI GGNCC 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 37
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 211
SetI ASST 3 cut(s) 178, 185, 227
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
SspMI CTAG 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 209
TaiI ACGT 1 cut(s) 178
TaqI TCGA 2 cut(s) 17, 108
TfiI GAWTC 2 cut(s) 19, 322
TscAI CASTG 4 cut(s) 122, 146, 201, 287
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 152, 235
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 4 cut(s) 122, 146, 201, 287
XspI CTAG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.