Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005362.1

Orthogroup ID

OG0004227

Physical Location & Seq

Genomic Coordinates Reverse (-)

33154 .. 33767

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005362.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggccaaagagacaaaggctcaaagaacagtaggtgttggagttgaagtcctgtggagagctatggccaaggatatagtttctgttatgccaaagataatgcctgatatagtgcaaagtgtcgaagtgattcagggaaatggtggcctcgattctgttctgctcttcaaacttggccgtgatccaaaatccaagagacaacagacggagaagattgtggaactagatgagtctcagtatcgatttgcactgcaagtgttagaaggcccagcactgacattgcgtgatttttcttcattgacaactacgtttcagctaagtgcaatcagtgagaaggagaccctggttgatatgaaggtggaatataatactgaaaaagaagaaactaatatgggagagatagcaatgcagccagtgctttctttcgttcaactccttgagaaacttgtattagaatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

153

Amino Acids

17.15

Weight (kDa)

4.91

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004227)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20810 FvH4_3g20810 FvH4_3g20820
malus_domestica	MD03G1220400.v1.1 MD03G1220500.v1.1 MD11G1238400.v1.1
prunus_persica	Prupe.4G188200_v2.0.a1 Prupe.4G188300_v2.0.a1 Prupe.4G188400_v2.0.a1
pyrus_communis	pycom11g21000
rosa_chinensis	RchiOBHm_Chr5g0035101 RchiOBHm_Chr5g0035111
rosa_laevigata	RLG00000033596 RLG00000033597 RLG00000033598
rosa_multiflora	Rmu_co8030986.1_g000001 Rmu_sc0000879.1_g000009 Rmu_sc0000879.1_g000011 Rmu_sc0005362.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045280 Rroxscaffold_1G00045300
rosa_rugosa	Rorug05G0149900 Rorug05G0150000 Rorug05G0150100
rosa_samantha	Rh5AG242900 Rh5BG242400 Rh5BG242500 Rh5CG273900 Rh5CG274000 Rh5CG274100 Rh5DG251000 Rh5DG251100
rosa_wichuraiana	Rw5G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	3 cut(s)	3, 66, 175
AgsI	TTSAA	3 cut(s)	47, 169, 431
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	2 cut(s)	62, 316
AluI	AGCT	2 cut(s)	62, 316
Alw26I	GTCTC	4 cut(s)	5, 190, 237, 332
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	5 cut(s)	3, 66, 145, 175, 265
ApeKI	GCWGC	1 cut(s)	409
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	266
BalI	TGGCCA	2 cut(s)	5, 68
BbvI	GCAGC	1 cut(s)	421
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	344
BcoDI	GTCTC	4 cut(s)	5, 190, 237, 332
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	69, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	2 cut(s)	278, 411
BseBI	CCWGG	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	69, 342
BseMI	GCAATG	2 cut(s)	278, 411
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	5 cut(s)	5, 68, 147, 177, 267
BshVI	ATCGAT	1 cut(s)	241
BsmAI	GTCTC	4 cut(s)	5, 190, 237, 332
BsnI	GGCC	5 cut(s)	5, 68, 147, 177, 267
Bso31I	GGTCTC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	5 cut(s)	5, 68, 147, 177, 267
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	241
BspPI	GGATC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	2 cut(s)	278, 411
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	69, 342
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstDEI	CTNAG	2 cut(s)	234, 317
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	4 cut(s)	5, 190, 237, 332
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	241
BsuRI	GGCC	5 cut(s)	5, 68, 147, 177, 267
BsuTUI	ATCGAT	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	4 cut(s)	248, 272, 334, 420
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	241
CviJI	RGCY	9 cut(s)	5, 20, 62, 68, 147, 177, 267, 316, 412
CviKI_1	RGCY	9 cut(s)	5, 20, 62, 68, 147, 177, 267, 316, 412
DdeI	CTNAG	2 cut(s)	234, 317
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	3 cut(s)	3, 66, 175
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaiI	YATR	8 cut(s)	65, 77, 89, 110, 353, 366, 392, 460
Fnu4HI	GCNGC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	1 cut(s)	410
GsaI	CCCAGC	1 cut(s)	272
HaeIII	GGCC	5 cut(s)	5, 68, 147, 177, 267
HinfI	GANTC	4 cut(s)	130, 152, 230, 455
HpyAV	CCTTC	3 cut(s)	257, 328, 349
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	5 cut(s)	115, 248, 253, 323, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	2 cut(s)	234, 317
HpySE526I	ACGT	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	170
LpnPI	CCDG	7 cut(s)	65, 117, 119, 282, 329, 356, 426
Lsp1109I	GCAGC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	308
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	4 cut(s)	157, 223, 285, 392
MlsI	TGGCCA	2 cut(s)	5, 68
MluNI	TGGCCA	2 cut(s)	5, 68
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	1 cut(s)	158
Mox20I	TGGCCA	2 cut(s)	5, 68
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	2 cut(s)	5, 68
Msp20I	TGGCCA	2 cut(s)	5, 68
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	415
NdeII	GATC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	130, 152, 455
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	170
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	5 cut(s)	37, 64, 311, 318, 360
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	3 cut(s)	123, 150, 241
TfiI	GAWTC	3 cut(s)	130, 152, 455
TscAI	CASTG	4 cut(s)	255, 279, 334, 420
TseI	GCWGC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	285, 368
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	4 cut(s)	255, 279, 334, 420
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.