Rh5BG242500

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004227
Physical Location & Seq
Forward (+)
29317471 .. 29317761
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG242500.1

Sequence Viewer

Length: 291 bp
ATGTTAGATGCATCAAAGATAATTTACCAGAAGGACAAGATTGTGGAGCTTGATGAGTCTGTGCATAAAATTGGGCTGCAAATAATAGAAGGAGGCCACTTGAACCATGGGTTTTCTTCATACAAAACAAGTTTCCAACTTACTGCAATTCAAGAGCAGGAGATCCTGGTTAGTTTCACAGTGACCTATGAGTCTGAAGTTAAAGATACTACCATGCCATCAAGGTCAACCCAAGCCGCTGTAGCTTTCATCAGGAGCCTAGAGTCCTATTTGTTAAGTGCTGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

96

Amino Acids

10.67

Weight (kDa)

5.21

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 7 - 93 1.4e-08 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 190
AciI CCGC 1 cut(s) 237
AclWI GGATC 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 216
AgsI TTSAA 2 cut(s) 103, 152
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 2 cut(s) 49, 245
AluI AGCT 2 cut(s) 49, 245
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 3 cut(s) 76, 281, 284
BbvI GCAGC 3 cut(s) 63, 268, 271
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 2 cut(s) 260, 289
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 4 cut(s) 77, 237, 282, 285
BlsI GCNGC 4 cut(s) 78, 238, 283, 286
Bme1390I CCNGG 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 63, 268, 271
BshFI GGCC 1 cut(s) 96
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 106
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 63, 268, 271
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 186
CviAII CATG 2 cut(s) 107, 214
CviJI RGCY 6 cut(s) 49, 76, 96, 236, 245, 258
CviKI_1 RGCY 6 cut(s) 49, 76, 96, 236, 245, 258
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DrdI GACNNNNNNGTC 1 cut(s) 190
DseDI GACNNNNNNGTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 110, 217
FaiI YATR 5 cut(s) 66, 108, 121, 189, 215
FatI CATG 2 cut(s) 106, 213
Fnu4HI GCNGC 4 cut(s) 77, 237, 282, 285
Fsp4HI GCNGC 4 cut(s) 77, 237, 282, 285
FspBI CTAG 2 cut(s) 260, 289
GluI GCNGC 4 cut(s) 77, 237, 282, 285
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 2 cut(s) 110, 217
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 3 cut(s) 56, 191, 263
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 152, 253
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 2 cut(s) 25, 83
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 4 cut(s) 11, 64, 79, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 110, 217
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 2 cut(s) 46, 255
LpnPI CCDG 5 cut(s) 41, 143, 152, 179, 238
Lsp1109I GCAGC 3 cut(s) 63, 268, 271
LweI GCATC 1 cut(s) 20
MaeI CTAG 2 cut(s) 260, 289
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 1 cut(s) 108
MflI RGATCY 1 cut(s) 162
MluCI AATT 3 cut(s) 21, 69, 147
MlyI GAGTC 3 cut(s) 65, 200, 272
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 86
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 2 cut(s) 201, 275
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 106
NdeII GATC 1 cut(s) 162
NlaIII CATG 2 cut(s) 110, 217
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 13
PkrI GCNGC 4 cut(s) 78, 238, 283, 286
PleI GAGTC 3 cut(s) 64, 199, 271
PpsI GAGTC 3 cut(s) 64, 199, 271
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 257
PsuI RGATCY 1 cut(s) 162
SaqAI TTAA 2 cut(s) 201, 275
SatI GCNGC 4 cut(s) 77, 237, 282, 285
Sau3AI GATC 1 cut(s) 162
SchI GAGTC 3 cut(s) 65, 200, 272
ScrFI CCNGG 1 cut(s) 167
SetI ASST 4 cut(s) 51, 188, 227, 247
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 240
Sse9I AATT 3 cut(s) 21, 69, 147
SsiI CCGC 1 cut(s) 237
SspMI CTAG 2 cut(s) 260, 289
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 181
TasI AATT 3 cut(s) 21, 69, 147
TauI GCSGC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 201, 275
Tru9I TTAA 2 cut(s) 201, 275
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 76, 281, 284
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 108, 238
TspRI CASTG 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XspI CTAG 2 cut(s) 260, 289
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.