Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Reverse (-)

23460068 .. 23460796

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTGATTTTCATGCAGAGATGTAGTGAGATGGTGATGCCCATTGGCCATGGAAATGCAAGCGATTCTATGTTCCCTCTGAAACCCTTTGATTTACACAGCTTTGTTAATGATTGCAAGAAAGAGTACGGTGTCCTGCCACAGCCTCATTGGATCACAACTTATTATGGGGGTCACCAAGCTGGTATCCTCAAGCTTCTGATTTATATAACTGAATTCCAGGATTTGAAGTCGATTCTCCATAGGTTTGGTAGCAACATTATTTTCTCCAATGGACTAAAAGATCCGTACAGTTGTGCCGGGGTTTTGGAAGACATATCGGATAGTGTGGTTGCCATCTCTACTGTTAATGGATCTCATTGCTTAGACATAATGGGGGCGAAACGACATGCTGAAGTGAAGACAATTGAAGGGTGGATTACTAAGTACCATTCTGAACATCAAGCAATCAAAGAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

154

Amino Acids

17.24

Weight (kDa)

6.34

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	6 - 129	5.5e-07	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	161, 278, 361
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	3 cut(s)	128, 290, 428
AgsI	TTSAA	2 cut(s)	229, 410
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	102, 182, 196
AluI	AGCT	3 cut(s)	102, 182, 196
AlwI	GGATC	3 cut(s)	161, 278, 361
AoxI	GGCC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	46, 167
BalI	TGGCCA	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	318, 407
BccI	CCATC	2 cut(s)	25, 344
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	221, 301
BmrFI	CCNGG	2 cut(s)	221, 301
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	2 cut(s)	318, 407
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	49, 300
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	49, 300
BseMI	GCAATG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	300
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	153, 283, 353
Bsp19I	CCATGG	1 cut(s)	49
BspANI	GGCC	1 cut(s)	48
BspPI	GGATC	3 cut(s)	161, 278, 361
BsrDI	GCAATG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	49, 300
BssMI	GATC	3 cut(s)	153, 283, 353
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	131, 293, 346
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	364, 423
BstDSI	CCRYGG	1 cut(s)	49
BstEII	GGTNACC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	156, 286, 356
BstMBI	GATC	3 cut(s)	153, 283, 353
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	392
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	219, 299
BstV2I	GAAGAC	2 cut(s)	318, 407
BstX2I	RGATCY	2 cut(s)	283, 353
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	283, 353
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	127, 289, 427
CviAII	CATG	3 cut(s)	13, 50, 389
CviJI	RGCY	5 cut(s)	48, 102, 145, 182, 196
CviKI_1	RGCY	5 cut(s)	48, 102, 145, 182, 196
CviQI	GTAC	3 cut(s)	127, 289, 427
DdeI	CTNAG	2 cut(s)	364, 423
DpnI	GATC	3 cut(s)	155, 285, 355
DpnII	GATC	3 cut(s)	153, 283, 353
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	414
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	3 cut(s)	16, 53, 392
FatI	CATG	3 cut(s)	12, 49, 388
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	3 cut(s)	16, 53, 392
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	2 cut(s)	65, 235
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	2 cut(s)	46, 167
Hpy188I	TCNGA	4 cut(s)	81, 201, 322, 436
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	3 cut(s)	131, 293, 346
HpyCH4V	TGCA	3 cut(s)	16, 59, 117
HpyF3I	CTNAG	2 cut(s)	364, 423
Hsp92II	CATG	3 cut(s)	16, 53, 392
Kzo9I	GATC	3 cut(s)	153, 283, 353
LpnPI	CCDG	5 cut(s)	149, 168, 206, 233, 313
LweI	GCATC	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	155, 285, 355
MboI	GATC	3 cut(s)	153, 283, 353
MboII	GAAGA	2 cut(s)	323, 412
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	283, 353
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	2 cut(s)	215, 405
MluNI	TGGCCA	1 cut(s)	48
MnlI	CCTC	3 cut(s)	87, 156, 200
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	108, 348
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	48
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	221, 301
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	221
NciI	CCSGG	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	3 cut(s)	153, 283, 353
NlaIII	CATG	3 cut(s)	16, 53, 392
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	65, 235
PfoI	TCCNGGA	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	219
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	219
PsuI	RGATCY	2 cut(s)	283, 353
RsaI	GTAC	3 cut(s)	128, 290, 428
RsaNI	GTAC	3 cut(s)	127, 289, 427
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	108, 348
Sau3AI	GATC	3 cut(s)	153, 283, 353
ScrFI	CCNGG	2 cut(s)	221, 301
SetI	ASST	4 cut(s)	104, 184, 198, 248
SfaNI	GCATC	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	215, 405
StyD4I	CCNGG	2 cut(s)	219, 299
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	3 cut(s)	131, 293, 346
TaqI	TCGA	1 cut(s)	233
TasI	AATT	2 cut(s)	215, 405
TfiI	GAWTC	2 cut(s)	65, 235
Tru1I	TTAA	2 cut(s)	108, 348
Tru9I	TTAA	2 cut(s)	108, 348
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	276
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.