Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Reverse (-)

13104785 .. 13107303

Gene Structure 2519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAGAAGATGACCGAATATGGGTCGACCCCATTTCTTTTCTGGTTCTCTTTCTTGTGTTTGCTTCATTCTCTTCCTGTCTACTCTGCCAAATCCTCACATCGTAGATTCCCATCTTTACTGATATCCCCAGAAGAAAAAATATCACTTTCTGCTCGTCAAAACCAACTTTACACAACCAAATACTTCACCCAAGTCCTTGATCATTTCAACTACCCCAAGAGCTACGAAACCTTCCAACATAGGTATTTGATAAATGATACGTACTGGGGAGGCGCCAAGAGCAATTCTCCAATCTTTGTTTACACTGGTAATGAAGGTAACATAGAATGGTTTGCGGAGAACACTGGTTTTCTGTATGAGACAGCTCCCCATTTTAAAGCCCTCATCATTTTCATCGAGCATCGGTTCTATGGAAAGTCTTTACCTTTTGGGGGCAAGAAAGATGTGGCTTATAGCAATGCAACTACACTGGGATATCTAAGCTCTACACAAGCCTTGGCAGATTATGCTTCCTTAATTATTGATTTGAAGAAGAATTTGACAGCAACTGACTCTCCTGTAGTGGTTCTTGGAGGTTCCCATGGAGAAATGCTAGCAGCATGGTTTAGGTTGAAATACCCCCATGTTACAATTGGAGCTTTGGCATCATCTTCTCCCATCCTCAATTTTAATAACATAACATCTCCAGAAAGCTTCAACAATATAATCACTAAGGACTTTATGGTTCTCTCTCTCTCTCTCTCTCTCTCATTTCTACTTAAAGACAAATTAGTGTACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

262

Amino Acids

29.61

Weight (kDa)

8.92

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	65 - 240	2.9e-46	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	2 cut(s)	26, 81
AciI	CCGC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	538
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	266, 779
AfiI	CCNNNNNNNGG	2 cut(s)	21, 434
AgsI	TTSAA	4 cut(s)	211, 532, 616, 700
AluBI	AGCT	5 cut(s)	225, 368, 486, 641, 696
AluI	AGCT	5 cut(s)	225, 368, 486, 641, 696
Alw26I	GTCTC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	1 cut(s)	538
AspLEI	GCGC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	181
AsuNHI	GCTAGC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	611
BccI	CCATC	2 cut(s)	121, 668
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	279
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
BmiI	GGNNCC	2 cut(s)	277, 580
BmrI	ACTGGG	2 cut(s)	277, 482
BmsI	GCATC	2 cut(s)	412, 656
BmtI	GCTAGC	1 cut(s)	599
BmuI	ACTGGG	2 cut(s)	277, 482
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	498, 583
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 434
Bse1I	ACTGG	4 cut(s)	272, 313, 352, 477
Bse3DI	GCAATG	1 cut(s)	466
Bse8I	GATNNNNATC	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	498, 583
BseGI	GGATG	1 cut(s)	660
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	21, 434
BseMI	GCAATG	1 cut(s)	466
BseNI	ACTGG	4 cut(s)	272, 313, 352, 477
BseXI	GCAGC	1 cut(s)	611
BshNI	GGYRCC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	21, 434
BsmAI	GTCTC	1 cut(s)	356
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	1 cut(s)	202
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	1 cut(s)	338
BspLI	GGNNCC	2 cut(s)	277, 580
BspOI	GCTAGC	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	4 cut(s)	272, 313, 352, 477
BssECI	CCNNGG	2 cut(s)	498, 583
BssMI	GATC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	2 cut(s)	498, 583
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	777
BstBAI	YACGTR	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	2 cut(s)	482, 714
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	1 cut(s)	660
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 509
BstSFI	CTRYAG	1 cut(s)	561
BstSNI	TACGTA	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	306, 345, 470
Cac8I	GCNNGC	1 cut(s)	597
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	265, 778
CviAII	CATG	3 cut(s)	584, 603, 626
CviJI	RGCY	8 cut(s)	225, 368, 383, 452, 486, 497, 641, 696
CviKI_1	RGCY	8 cut(s)	225, 368, 383, 452, 486, 497, 641, 696
CviQI	GTAC	2 cut(s)	265, 778
DdeI	CTNAG	2 cut(s)	482, 714
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DraI	TTTAAA	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco105I	TACGTA	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	498, 583
Eco32I	GATATC	2 cut(s)	126, 479
EcoRV	GATATC	2 cut(s)	126, 479
EcoT14I	CCWWGG	2 cut(s)	498, 583
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	498, 583
FaeI	CATG	3 cut(s)	587, 606, 629
FatI	CATG	3 cut(s)	583, 602, 625
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	2 cut(s)	26, 81
Fnu4HI	GCNGC	1 cut(s)	600
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	1 cut(s)	600
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	672
HaeII	RGCGCY	1 cut(s)	279
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	587, 606, 629
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	2 cut(s)	108, 554
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	4 cut(s)	27, 82, 304, 778
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	4 cut(s)	27, 82, 304, 778
HpyAV	CCTTC	2 cut(s)	244, 311
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 509
HpyF3I	CTNAG	2 cut(s)	482, 714
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	587, 606, 629
HspAI	GCGC	1 cut(s)	276
KasI	GGCGCC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	373, 638
LpnPI	CCDG	9 cut(s)	28, 90, 144, 253, 294, 333, 458, 573, 702
Lsp1109I	GCAGC	1 cut(s)	611
LweI	GCATC	2 cut(s)	412, 656
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	320, 628
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	7 cut(s)	16, 19, 65, 146, 544, 547, 645
MfeI	CAATTG	1 cut(s)	633
MluCI	AATT	7 cut(s)	286, 519, 538, 633, 667, 770, 781
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	5 cut(s)	106, 266, 395, 569, 674
MseI	TTAA	5 cut(s)	378, 518, 672, 762, 784
MunI	CAATTG	1 cut(s)	633
MwoI	GCNNNNNNNGC	2 cut(s)	282, 509
NarI	GGCGCC	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	1 cut(s)	202
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	3 cut(s)	587, 606, 629
NlaIV	GGNNCC	2 cut(s)	277, 580
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	601
PleI	GAGTC	1 cut(s)	548
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	548
Ppu21I	YACGTR	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	277, 580
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	266, 779
RsaNI	GTAC	2 cut(s)	265, 778
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	5 cut(s)	378, 518, 672, 762, 784
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	548
SfaNI	GCATC	2 cut(s)	412, 656
SfcI	CTRYAG	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	277
SnaBI	TACGTA	1 cut(s)	264
Sse9I	AATT	7 cut(s)	286, 519, 538, 633, 667, 770, 781
SsiI	CCGC	1 cut(s)	338
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	596
StyI	CCWWGG	2 cut(s)	498, 583
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	26, 399
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	7 cut(s)	286, 519, 538, 633, 667, 770, 781
TatI	WGTACW	1 cut(s)	777
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	5 cut(s)	378, 518, 672, 762, 784
Tru9I	TTAA	5 cut(s)	378, 518, 672, 762, 784
TscAI	CASTG	3 cut(s)	313, 352, 477
TseI	GCWGC	1 cut(s)	599
TspDTI	ATGAA	4 cut(s)	17, 56, 330, 385
TspRI	CASTG	3 cut(s)	313, 352, 477
XapI	RAATTY	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	2 cut(s)	39, 632
XmiI	GTMKAC	2 cut(s)	26, 81
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.