RLG00000023878

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
29471348 .. 29478414
7067 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023878

Sequence Viewer

Length: 1548 bp
ATGAAGAAGATGACAGAATCTGGGTCCCCATTTCTTTTCTGCTTCTCTTTCTTCTGTTTGCTGATCCATTGTCTTCCTGTCTACCCTGCCAAATCCCCACTTCCTAGATTCCCATCTTCACTAATATCCCCAGAAGATAAGATATCACTTTCTGCTGGTCAAAACCAACTTTACAGAACCAAATACTTCACCCAAGTCCTTGATCATTTCAATTACTATCCCAAGAGCTATGAATCTTTTCAACAGAGGTATTTGATAAATGAAACGTTCTGGGGAGGCGCCAAGAGCAATGCTCCAATCTTTGTCTACACTGGTAATGAAGGGAACATAGAATGGTTTGCGCAGAACACTGGTTTTCTGTATGAGACAGCGCCCCAGTTCAAAGCCCTCATCATTTTCATCGAGCATAGGTTCTATGGAAAGTCTATACCTTTTGGGGGCAAGAAAGATGTGGTTTATAGCAATTCAACTACACTTGGATATCTAAGCTCCACACAAGCCTTGGCAGATTATGCTTCCTTAATTATTGATTTGAAGAAAAATTTGACAGCAACTGACTCACCTGTAGTGGTCTTTGGAGGTTCTTATGGAGGAATGCTGGCAGCATGGTTTAGGTTGAAGTATCCCCATGTTACAATTGGAGCTTTGGCATCATCTGCCCCAATCCTCAATTTTGAGCATATAACATCTCCTTATAGCTTCAACGATATAGTCACTAAAGACTTTAGGGGTGAGAGTGAAAGTTGTTACAGAGTGATCAAAGGATCGTGGCAACAGATCGAAGACACTGCAAACCAACATGGAGGGCTTGAGCTACTCCGGAAATCGTTTAAAATATGCAAGAATTATATTAGCGCAGATGATCTTGAAGGTTGGCTTAGAACCGCTTATATTTACACAGCAATGACAGATTATCCTACTCCCTCGAATTTCTTAAATCCCTTGCCAGCATATCCAGTGAAACAGATGTGTAAGGCGATTGATGATCCAACGACAGGAAATGATACATTTGCAAAATTATATGGTGCAGCTACTGTCTACTATAACTACAGTGGGACGGCTACGTGTTTCGATCTTAATGATAACTCAGATCCTCACGACCTCGGAGGATGGCAATGGCAGGCGTGTACAGAGATGATAATGCCAGCAAGCGCTAACAACGAGGAGAGCATATTCCCACCTTCTGAGTGGCAATACAAAAATCGAGTCTCTTATTGCGAGAGGGCTTATGGCGTTGAACCTAGGCCTCATTGGATCACCACCGAGTTCGGCGGGCATGATATCAAGAGGGTTTTGAGAAGATATGGGAGCAACATTATCTTCTTTAATGGCTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTGAACAATATTTCCAAGAGCATAGTAGCAATTGTTGCAAAAAAAGGTGCTCACCATGTAGATTTGAGGTTCAAAACCAGTGAAGATCCAGAATGGCTTGAAGATGTGAGGAAGCAAGAGATCAAGATCATTGCAAAGTGGATCTCAGAATATTATCATGACCTTGCTTATGATCAATTATCTTAA

Protein Analysis

516

Amino Acids

58.5

Weight (kDa)

6.47

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 65 - 492 6.8e-85 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 3 cut(s) 81, 306, 1038
AccIII TCCGGA 1 cut(s) 819
AciI CCGC 2 cut(s) 885, 1272
AclI AACGTT 1 cut(s) 266
AclWI GGATC 7 cut(s) 58, 772, 980, 1085, 1262, 1442, 1511
AcsI RAATTY 2 cut(s) 541, 928
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 1 cut(s) 1129
AfeI AGCGCT 1 cut(s) 1153
AfiI CCNNNNNNNGG 3 cut(s) 437, 995, 1349
AflII CTTAAG 1 cut(s) 1333
AflIII ACRYGT 1 cut(s) 1064
AloI GAACNNNNNNTCC 2 cut(s) 1358, 1390
AluBI AGCT 6 cut(s) 228, 489, 644, 699, 814, 1031
AluI AGCT 6 cut(s) 228, 489, 644, 699, 814, 1031
Alw21I GWGCWC 1 cut(s) 1414
Alw26I GTCTC 3 cut(s) 359, 1213, 1332
AlwI GGATC 7 cut(s) 58, 772, 980, 1085, 1262, 1442, 1511
AlwNI CAGNNNCTG 3 cut(s) 20, 554, 1034
Aor13HI TCCGGA 1 cut(s) 819
Aor51HI AGCGCT 1 cut(s) 1153
AoxI GGCC 1 cut(s) 1244
ApeKI GCWGC 2 cut(s) 602, 1028
ApoI RAATTY 2 cut(s) 541, 928
ArsI GACNNNNNNTTYG 2 cut(s) 1191, 1223
Asp700I GAANNNNTTC 1 cut(s) 237
AspA2I CCTAGG 1 cut(s) 1241
AspLEI GCGC 5 cut(s) 281, 343, 373, 857, 1154
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 5 cut(s) 181, 552, 743, 1249, 1406
AvaII GGWCC 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 1241
BanI GGYRCC 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 65, 789
Bbv12I GWGCWC 1 cut(s) 1414
BbvI GCAGC 2 cut(s) 614, 1040
BccI CCATC 2 cut(s) 121, 1104
BceAI ACGGC 1 cut(s) 1074
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciVI GTATCC 1 cut(s) 633
BclI TGATCA 3 cut(s) 202, 756, 1534
BcoDI GTCTC 3 cut(s) 359, 1213, 1332
BfaI CTAG 2 cut(s) 105, 1242
BfmI CTRYAG 2 cut(s) 564, 1048
BfoI RGCGCY 3 cut(s) 282, 374, 1155
BfrI CTTAAG 1 cut(s) 1333
BfuI GTATCC 1 cut(s) 633
BisI GCNGC 2 cut(s) 603, 1029
BlnI CCTAGG 1 cut(s) 1241
BlsI GCNGC 2 cut(s) 604, 1030
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 3 cut(s) 25, 26, 280
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 659
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 2 cut(s) 65, 789
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpuEI CTTGAG 1 cut(s) 830
BsaAI YACGTR 1 cut(s) 1065
BsaBI GATNNNNATC 2 cut(s) 112, 1487
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 1332
BsaJI CCNNGG 4 cut(s) 501, 1102, 1241, 1343
BsaWI WCCGGW 1 cut(s) 819
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 995, 1349
Bse1I ACTGG 5 cut(s) 316, 355, 376, 956, 1440
Bse3DI GCAATG 4 cut(s) 295, 909, 1121, 1491
Bse8I GATNNNNATC 2 cut(s) 112, 1487
BseAI TCCGGA 1 cut(s) 819
BseDI CCNNGG 4 cut(s) 501, 1102, 1241, 1343
BseGI GGATG 1 cut(s) 1115
BseJI GATNNNNATC 2 cut(s) 112, 1487
BseLI CCNNNNNNNGG 3 cut(s) 437, 995, 1349
BseMI GCAATG 4 cut(s) 295, 909, 1121, 1491
BseMII CTCAG 3 cut(s) 1101, 1176, 1521
BseNI ACTGG 5 cut(s) 316, 355, 376, 956, 1440
BseRI GAGGAG 1 cut(s) 1178
BseXI GCAGC 2 cut(s) 614, 1040
BsgI GTGCAG 1 cut(s) 1047
BshFI GGCC 1 cut(s) 1246
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 1414
BsiSI CCGG 1 cut(s) 820
BslFI GGGAC 2 cut(s) 10, 1069
BslI CCNNNNNNNGG 3 cut(s) 437, 995, 1349
BsmAI GTCTC 3 cut(s) 359, 1213, 1332
BsmFI GGGAC 2 cut(s) 10, 1069
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 1 cut(s) 1246
Bso31I GGTCTC 1 cut(s) 1332
Bsp1286I GDGCHC 1 cut(s) 1414
Bsp13I TCCGGA 1 cut(s) 819
Bsp1407I TGTACA 1 cut(s) 1127
BspACI CCGC 2 cut(s) 885, 1272
BspANI GGCC 1 cut(s) 1246
BspCNI CTCAG 3 cut(s) 1100, 1177, 1520
BspEI TCCGGA 1 cut(s) 819
BspHI TCATGA 1 cut(s) 1519
BspLI GGNNCC 3 cut(s) 25, 26, 280
BspPI GGATC 7 cut(s) 58, 772, 980, 1085, 1262, 1442, 1511
BspT107I GGYRCC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 1333
BspTNI GGTCTC 1 cut(s) 1332
BsrDI GCAATG 4 cut(s) 295, 909, 1121, 1491
BsrGI TGTACA 1 cut(s) 1127
BsrI ACTGG 5 cut(s) 316, 355, 376, 956, 1440
BssECI CCNNGG 4 cut(s) 501, 1102, 1241, 1343
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 3 cut(s) 501, 1241, 1343
Bst4CI ACNGT 2 cut(s) 1036, 1052
BstACI GRCGYC 1 cut(s) 279
BstAFI CTTAAG 1 cut(s) 1333
BstAPI GCANNNNNTGC 3 cut(s) 512, 656, 1397
BstAUI TGTACA 1 cut(s) 1127
BstBAI YACGTR 1 cut(s) 1065
BstC8I GCNNGC 6 cut(s) 600, 948, 1122, 1146, 1150, 1274
BstDEI CTNAG 5 cut(s) 485, 878, 1087, 1185, 1507
BstF5I GGATG 1 cut(s) 1115
BstH2I RGCGCY 3 cut(s) 282, 374, 1155
BstHHI GCGC 5 cut(s) 281, 343, 373, 857, 1154
BstMAI GTCTC 3 cut(s) 359, 1213, 1332
BstMWI GCNNNNNNNGC 4 cut(s) 285, 512, 656, 1397
BstSFI CTRYAG 2 cut(s) 564, 1048
BstV1I GCAGC 2 cut(s) 614, 1040
BstV2I GAAGAC 2 cut(s) 65, 789
BstX2I RGATCY 3 cut(s) 1090, 1447, 1503
BstYI RGATCY 3 cut(s) 1090, 1447, 1503
BsuI GTATCC 1 cut(s) 633
BsuRI GGCC 1 cut(s) 1246
BtsCI GGATG 1 cut(s) 1115
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 6 cut(s) 309, 348, 786, 963, 1057, 1447
Cac8I GCNNGC 6 cut(s) 600, 948, 1122, 1146, 1150, 1274
CaiI CAGNNNCTG 3 cut(s) 20, 554, 1034
CciI TCATGA 1 cut(s) 1519
CfoI GCGC 5 cut(s) 281, 343, 373, 857, 1154
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 1128
CviAII CATG 6 cut(s) 606, 629, 800, 1277, 1418, 1520
CviQI GTAC 1 cut(s) 1128
DdeI CTNAG 5 cut(s) 485, 878, 1087, 1185, 1507
DinI GGCGCC 1 cut(s) 280
DraI TTTAAA 1 cut(s) 832
Eco130I CCWWGG 3 cut(s) 501, 1241, 1343
Eco147I AGGCCT 1 cut(s) 1246
Eco31I GGTCTC 1 cut(s) 1332
Eco32I GATATC 3 cut(s) 144, 482, 1282
Eco47I GGWCC 1 cut(s) 24
Eco47III AGCGCT 1 cut(s) 1153
EcoO109I RGGNCCY 1 cut(s) 24
EcoRV GATATC 3 cut(s) 144, 482, 1282
EcoT14I CCWWGG 3 cut(s) 501, 1241, 1343
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 3 cut(s) 501, 1241, 1343
FaeI CATG 6 cut(s) 609, 632, 803, 1280, 1421, 1523
FalI AAGNNNNNCTT 4 cut(s) 861, 893, 1327, 1359
FaqI GGGAC 2 cut(s) 10, 1069
FatI CATG 6 cut(s) 605, 628, 799, 1276, 1417, 1519
FauI CCCGC 1 cut(s) 1265
FbaI TGATCA 3 cut(s) 202, 756, 1534
FblI GTMKAC 3 cut(s) 81, 306, 1038
Fnu4HI GCNGC 2 cut(s) 603, 1029
FokI GGATG 1 cut(s) 1122
Fsp4HI GCNGC 2 cut(s) 603, 1029
FspBI CTAG 2 cut(s) 105, 1242
FspI TGCGCA 1 cut(s) 342
GlaI GCGC 5 cut(s) 280, 342, 372, 856, 1153
GluI GCNGC 2 cut(s) 603, 1029
HaeII RGCGCY 3 cut(s) 282, 374, 1155
HaeIII GGCC 1 cut(s) 1246
HapII CCGG 1 cut(s) 820
HhaI GCGC 5 cut(s) 281, 343, 373, 857, 1154
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 6 cut(s) 609, 632, 803, 1280, 1421, 1523
Hin6I GCGC 5 cut(s) 279, 341, 371, 855, 1152
HinP1I GCGC 5 cut(s) 279, 341, 371, 855, 1152
HinfI GANTC 5 cut(s) 17, 108, 233, 557, 1206
HpaII CCGG 1 cut(s) 820
HphI GGTGA 5 cut(s) 181, 552, 743, 1249, 1406
Hpy166II GTNNAC 4 cut(s) 82, 307, 1039, 1128
Hpy188I TCNGA 4 cut(s) 1090, 1106, 1186, 1510
Hpy188III TCNNGA 7 cut(s) 820, 866, 1097, 1285, 1451, 1486, 1520
Hpy8I GTNNAC 4 cut(s) 82, 307, 1039, 1128
HpyAV CCTTC 3 cut(s) 314, 863, 1191
HpyCH4III ACNGT 2 cut(s) 1036, 1052
HpyCH4IV ACGT 2 cut(s) 266, 1064
HpyCH4V TGCA 6 cut(s) 791, 840, 1013, 1028, 1400, 1496
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 512, 656, 1397
HpyF3I CTNAG 5 cut(s) 485, 878, 1087, 1185, 1507
HpySE526I ACGT 2 cut(s) 266, 1064
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 6 cut(s) 609, 632, 803, 1280, 1421, 1523
HspAI GCGC 5 cut(s) 279, 341, 371, 855, 1152
KasI GGCGCC 1 cut(s) 278
KflI GGGWCCC 1 cut(s) 24
Kpn2I TCCGGA 1 cut(s) 819
Ksp22I TGATCA 3 cut(s) 202, 756, 1534
LmnI GCTCC 4 cut(s) 298, 494, 641, 1308
Lsp1109I GCAGC 2 cut(s) 614, 1040
LweI GCATC 1 cut(s) 659
MaeI CTAG 2 cut(s) 105, 1242
MaeII ACGT 2 cut(s) 266, 1064
MaeIII GTNAC 3 cut(s) 631, 712, 746
MfeI CAATTG 2 cut(s) 636, 1392
MflI RGATCY 3 cut(s) 1090, 1447, 1503
MhlI GDGCHC 1 cut(s) 1414
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 2 cut(s) 551, 1215
MmeI TCCRAC 1 cut(s) 1013
MroI TCCGGA 1 cut(s) 819
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 7 cut(s) 521, 831, 935, 1077, 1326, 1334, 1546
MslI CAYNNNNRTG 1 cut(s) 902
MspCI CTTAAG 1 cut(s) 1333
MspI CCGG 1 cut(s) 820
MunI CAATTG 2 cut(s) 636, 1392
Mva1269I GAATGC 1 cut(s) 600
MwoI GCNNNNNNNGC 4 cut(s) 285, 512, 656, 1397
NarI GGCGCC 1 cut(s) 279
NlaIII CATG 6 cut(s) 609, 632, 803, 1280, 1421, 1523
NlaIV GGNNCC 3 cut(s) 25, 26, 280
NmuCI GTSAC 1 cut(s) 712
NsbI TGCGCA 1 cut(s) 342
PagI TCATGA 1 cut(s) 1519
PceI AGGCCT 1 cut(s) 1246
PctI GAATGC 1 cut(s) 600
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 3 cut(s) 17, 108, 233
PkrI GCNGC 2 cut(s) 604, 1030
PleI GAGTC 2 cut(s) 551, 1214
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 2 cut(s) 551, 1214
Ppu21I YACGTR 1 cut(s) 1065
PpuMI RGGWCCY 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 25, 26, 280
PspPI GGNCC 1 cut(s) 24
PspPPI RGGWCCY 1 cut(s) 24
PstNI CAGNNNCTG 3 cut(s) 20, 554, 1034
PsuI RGATCY 3 cut(s) 1090, 1447, 1503
RsaI GTAC 1 cut(s) 1129
RsaNI GTAC 1 cut(s) 1128
RseI CAYNNNNRTG 1 cut(s) 902
SaqAI TTAA 7 cut(s) 521, 831, 935, 1077, 1326, 1334, 1546
SatI GCNGC 2 cut(s) 603, 1029
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 2 cut(s) 551, 1215
SduI GDGCHC 1 cut(s) 1414
SfaNI GCATC 1 cut(s) 659
SfcI CTRYAG 2 cut(s) 564, 1048
SfoI GGCGCC 1 cut(s) 280
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 809, 1333
SmoI CTYRAG 2 cut(s) 809, 1333
SseBI AGGCCT 1 cut(s) 1246
SsiI CCGC 2 cut(s) 885, 1272
SspDI GGCGCC 1 cut(s) 278
SspI AATATT 2 cut(s) 1372, 1514
SspMI CTAG 2 cut(s) 105, 1242
StuI AGGCCT 1 cut(s) 1246
StyI CCWWGG 3 cut(s) 501, 1241, 1343
TaaI ACNGT 2 cut(s) 1036, 1052
TaiI ACGT 2 cut(s) 269, 1067
TaqI TCGA 5 cut(s) 402, 780, 926, 1071, 1204
TatI WGTACW 1 cut(s) 1127
TfiI GAWTC 3 cut(s) 17, 108, 233
Tru1I TTAA 7 cut(s) 521, 831, 935, 1077, 1326, 1334, 1546
Tru9I TTAA 7 cut(s) 521, 831, 935, 1077, 1326, 1334, 1546
TscAI CASTG 6 cut(s) 316, 355, 793, 963, 1057, 1447
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 2 cut(s) 602, 1028
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 5 cut(s) 17, 246, 276, 333, 388
TspRI CASTG 6 cut(s) 316, 355, 793, 963, 1057, 1447
Vha464I CTTAAG 1 cut(s) 1333
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 2 cut(s) 541, 928
XcmI CCANNNNNNNNNTGG 3 cut(s) 499, 635, 1185
XmaJI CCTAGG 1 cut(s) 1241
XmiI GTMKAC 3 cut(s) 81, 306, 1038
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 2 cut(s) 105, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.