Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Reverse (-)

11930762 .. 11931640

Gene Structure 879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0145600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCCGACGAAGGCCGAGAAGAAGCCGGTGGCGGAGAAGTCCCCGGCGGCGGAGAAGAAACCGAAGGCGGAGAAGAAGATCCCCAAGGAAGGCGGCGTGGAGATGAAGAAGAAGAAGAAGGTGAAGAAGAGCACGGAGACCTATAAGATCTACATCTTCAAGGTTCTGAAGCAGGTTCATCCGGACATTGGTATCTCCAGCAAGGCCATGGGGATCATGAACAGTTTTATCAATGATATTTTTGAGAAGCTGGCGCAGGAGGCCTCGAGGTTGGCCAGGTACAACAAGAAGCCGACCATTACCTCGAGGGAGATCCAGACTGCTGTTCGGTTGGTGTTGCCTGGAGAGCTGGCCAAGCATGCAGTTTCCGAGGGAACCAAGGCGGTCACCAAGTTTACAAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

10.0

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	37 - 112	1.4e-20	Core histone H2A/H2B/H3/H4 domain
Histone_ABTB	PF26281	66 - 134	1.8e-08	Histone domain in ABTB family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	2 cut(s)	268, 307
Acc36I	ACCTGC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	6 cut(s)	35, 50, 53, 71, 96, 386
AclWI	GGATC	3 cut(s)	76, 224, 310
AcoI	YGGCCR	2 cut(s)	276, 354
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	3 cut(s)	52, 92, 191
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	278, 343
AluBI	AGCT	3 cut(s)	253, 352, 405
AluI	AGCT	3 cut(s)	253, 352, 405
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	3 cut(s)	76, 224, 310
Ama87I	CYCGRG	2 cut(s)	268, 307
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	5 cut(s)	15, 207, 264, 276, 354
AspLEI	GCGC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	136, 382
AvaI	CYCGRG	2 cut(s)	268, 307
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BalI	TGGCCA	2 cut(s)	278, 356
Bbv12I	GWGCWC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	280, 345
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	2 cut(s)	51, 97
BlsI	GCNGC	2 cut(s)	52, 98
Bme1390I	CCNGG	3 cut(s)	47, 280, 345
BmeT110I	CYCGRG	2 cut(s)	268, 307
BmiI	GGNNCC	2 cut(s)	6, 379
BmrFI	CCNGG	3 cut(s)	47, 280, 345
BpmI	CTGGAG	2 cut(s)	184, 366
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	5 cut(s)	45, 87, 210, 372, 381
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 92, 191
Bse118I	RCCGGY	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	280, 345
BseDI	CCNNGG	5 cut(s)	45, 87, 210, 372, 381
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	3 cut(s)	52, 92, 191
BshFI	GGCC	5 cut(s)	17, 209, 266, 278, 356
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	2 cut(s)	268, 307
BsiSI	CCGG	3 cut(s)	29, 47, 185
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	52, 92, 191
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	5 cut(s)	17, 209, 266, 278, 356
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	2 cut(s)	268, 307
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	81, 150, 216, 315
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	6 cut(s)	35, 50, 53, 71, 96, 386
BspANI	GGCC	5 cut(s)	17, 209, 266, 278, 356
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	6, 379
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	3 cut(s)	76, 224, 310
BspQI	GCTCTTC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	5 cut(s)	45, 87, 210, 372, 381
BssMI	GATC	4 cut(s)	81, 150, 216, 315
BssT1I	CCWWGG	3 cut(s)	87, 210, 381
Bst2UI	CCWGG	2 cut(s)	280, 345
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	255, 354, 363
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	84, 153, 219, 318
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	4 cut(s)	81, 150, 216, 315
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 349, 358, 362
BstNI	CCWGG	2 cut(s)	280, 345
BstNSI	RCATGY	1 cut(s)	365
BstPI	GGTNACC	1 cut(s)	388
BstSCI	CCNGG	3 cut(s)	45, 278, 343
BstX2I	RGATCY	3 cut(s)	81, 150, 315
BstYI	RGATCY	3 cut(s)	81, 150, 315
BsuRI	GGCC	5 cut(s)	17, 209, 266, 278, 356
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	255, 354, 363
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	211, 220, 362
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	4 cut(s)	83, 152, 218, 317
DpnII	GATC	4 cut(s)	81, 150, 216, 315
EaeI	YGGCCR	2 cut(s)	276, 354
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	3 cut(s)	50, 68, 86
Eco130I	CCWWGG	3 cut(s)	87, 210, 381
Eco147I	AGGCCT	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	2 cut(s)	268, 307
Eco91I	GGTNACC	1 cut(s)	388
EcoO65I	GGTNACC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	278, 343
EcoT14I	CCWWGG	3 cut(s)	87, 210, 381
ErhI	CCWWGG	3 cut(s)	87, 210, 381
FaeI	CATG	3 cut(s)	214, 223, 365
FaiI	YATR	4 cut(s)	147, 212, 221, 363
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	3 cut(s)	210, 219, 361
Fnu4HI	GCNGC	2 cut(s)	51, 97
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	51, 97
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	51, 97
GsuI	CTGGAG	2 cut(s)	184, 366
HaeIII	GGCC	5 cut(s)	17, 209, 266, 278, 356
HapII	CCGG	3 cut(s)	29, 47, 185
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	3 cut(s)	214, 223, 365
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HpaII	CCGG	3 cut(s)	29, 47, 185
HphI	GGTGA	2 cut(s)	136, 382
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	3 cut(s)	9, 171, 373
Hpy188III	TCNNGA	3 cut(s)	185, 220, 319
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	4 cut(s)	7, 61, 86, 115
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 349, 358, 362
Hsp92II	CATG	3 cut(s)	214, 223, 365
HspAI	GCGC	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	81, 150, 216, 315
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	4 cut(s)	83, 152, 218, 317
MboI	GATC	4 cut(s)	81, 150, 216, 315
MflI	RGATCY	3 cut(s)	81, 150, 315
MhlI	GDGCHC	1 cut(s)	137
MlsI	TGGCCA	2 cut(s)	278, 356
MluNI	TGGCCA	2 cut(s)	278, 356
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	6 cut(s)	256, 264, 277, 303, 316, 367
Mox20I	TGGCCA	2 cut(s)	278, 356
MroI	TCCGGA	1 cut(s)	184
MscI	TGGCCA	2 cut(s)	278, 356
Msp20I	TGGCCA	2 cut(s)	278, 356
MspI	CCGG	3 cut(s)	29, 47, 185
MspR9I	CCNGG	3 cut(s)	47, 280, 345
MvaI	CCWGG	2 cut(s)	280, 345
MwoI	GCNNNNNNNGC	4 cut(s)	263, 349, 358, 362
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	4 cut(s)	81, 150, 216, 315
NlaIII	CATG	3 cut(s)	214, 223, 365
NlaIV	GGNNCC	2 cut(s)	6, 379
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PaeR7I	CTCGAG	2 cut(s)	268, 307
PagI	TCATGA	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	52, 98
Psp6I	CCWGG	2 cut(s)	278, 343
PspEI	GGTNACC	1 cut(s)	388
PspGI	CCWGG	2 cut(s)	278, 343
PspN4I	GGNNCC	2 cut(s)	6, 379
PspXI	VCTCGAGB	2 cut(s)	268, 307
PsuI	RGATCY	3 cut(s)	81, 150, 315
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SapI	GCTCTTC	1 cut(s)	125
SatI	GCNGC	2 cut(s)	51, 97
Sau3AI	GATC	4 cut(s)	81, 150, 216, 315
ScrFI	CCNGG	3 cut(s)	47, 280, 345
SduI	GDGCHC	1 cut(s)	137
Sfr274I	CTCGAG	2 cut(s)	268, 307
SlaI	CTCGAG	2 cut(s)	268, 307
SmlI	CTYRAG	2 cut(s)	268, 307
SmoI	CTYRAG	2 cut(s)	268, 307
SphI	GCATGC	1 cut(s)	365
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	6 cut(s)	35, 50, 53, 71, 96, 386
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	3 cut(s)	45, 278, 343
StyI	CCWWGG	3 cut(s)	87, 210, 381
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	269, 308
TauI	GCSGC	2 cut(s)	53, 99
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	3 cut(s)	122, 170, 236
TspGWI	ACGGA	1 cut(s)	152
XceI	RCATGY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XhoI	CTCGAG	2 cut(s)	268, 307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.