Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Reverse (-)

3535222 .. 3541755

Gene Structure 6534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1032200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGAAGATAACAAAACTCAAAGATTCCTCAATATTTCTCTGGTTTTCTTTCTTCTGTTTGCTGCTGTCTCCTTCCACTTCCTTTGCCAGAACCACACTTCCTGCTAGGTTTCCATCTTCTTTCGTTTCCCCTGAAAAGCTCTCATCACTTTCTTCTTCCGAAAAAAACCAACTTTACAGAACCAGATACTTCACCCAAATACTTGACCATTTCAATTTCTACCCCAAAAGCTACCAAACCTTCCAACAAAGGTATTTGATCAACGACACGCATTGGGGAGGAGCCAAGAGCAATGCTCCGATCTTTGTTTACACAGGAAATGAAGGAAATATAGAATGGTTTGCACAAAACACTGGCTTTTTGTATGAGACAGCTCCCCACTTCAAAGCCCTCATCGTTTTCATTGAGCATAGATTCTATGGGAAGTCTATACCCTATGGGGGAAACAAGGAGGTAGCTTACAGCAATGCAACCACACTTGGATATTTGAGTTCAACACAGGCACTGGCAGATTATGCTTCCTTAATCATTGATTTGAAGAAAAATTTGTCAGCAACTGACTCTCCTGTGGTGGTCTTCGGAGGTTCCTATGGAGGAATGCTGGCAGCGTGGTTTAGGTTGAAGTATCCGCACGTTACAATTGGAGCCTTGGCATCATCGGCTCCCATCCTCAATTTTGAGAATATTACATCTCCATACAGCTTCACCAACATCATCACTCAAGACTTTAGGAGTGAGAGTGAAAATTGCTACAAAGTGATCAAAGGCTCATGGGAACAGATCGAAAGCACAGCAGATCAACCTGGAGGGCTCGAACTGCTCCGAAATTCATTTAAAATATGCAAGAATTATATTAGTGCAGATTATCTCGAAGGTTGGCTTCGTACCGCCTTCACTTACACAGCAATGACGGATTATCCTACACCCTCCAATTTCCTAAGTCCCTTGCCAGCATTTCCAGTCAAACAGATGTGTGCGGCGATAGATGATCCAACGACTGGAAACGATACATTTAAGAAGTTGTACGGTGCAGCTTCTGTATATTATAATTATAGTGGGACCGCCACGTGTTTCGATCTTGATGATGACTCTGATCCTCACGACCTTGGAGGATGGTCTTGGCAGGCTTGCACAGAAATGATAATGCCAACAAGCGGAAACACCGAGGAGAGCATATTCCCAGCTTCCGAATGGAAGTACAAATACAGAGCCGCTTCATGCAAGAGGAGTTTTGGCATTGAACCGAGGCCCCTTTGGATCACCACTGAGTTCGGCGGCCATGATATTGAGAGGGTTTTAAAAAGATATGGAAGCAATATTATCTTCTTTAATGGCTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTAAAGAATATATCCAAGAGCATAGTAGCCATTGTTGCAAAAGAAGGTGCTCACCATGTAGATTTGAGGTTCAAAAACAGTGAAGATCCAGACTGGCTTAAAGAAGTGAGGAAACAAGAGATCAACATCATTGGAAATTGGATCTCCCAATATTACCATGACCTTGCCCAACTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

515

Amino Acids

58.16

Weight (kDa)

6.57

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	66 - 493	3.7e-84	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1047
AccB7I	CCANNNNNTGG	1 cut(s)	998
AciI	CCGC	7 cut(s)	629, 888, 977, 1062, 1155, 1212, 1275
AclWI	GGATC	5 cut(s)	983, 1088, 1265, 1445, 1514
AcoI	YGGCCR	1 cut(s)	1276
AcsI	RAATTY	2 cut(s)	544, 826
AcvI	CACGTG	1 cut(s)	1068
AfaI	GTAC	3 cut(s)	886, 1025, 1199
AfiI	CCNNNNNNNGG	4 cut(s)	440, 998, 1154, 1352
AflII	CTTAAG	1 cut(s)	1336
AflIII	ACRYGT	1 cut(s)	1067
AgsI	TTSAA	7 cut(s)	214, 385, 495, 538, 622, 1241, 1438
AjnI	CCWGG	1 cut(s)	802
AloI	GAACNNNNNNTCC	2 cut(s)	82, 114
AluBI	AGCT	7 cut(s)	139, 231, 374, 458, 702, 1034, 1184
AluI	AGCT	7 cut(s)	139, 231, 374, 458, 702, 1034, 1184
Alw21I	GWGCWC	1 cut(s)	1417
Alw26I	GTCTC	3 cut(s)	72, 362, 1335
AlwI	GGATC	5 cut(s)	983, 1088, 1265, 1445, 1514
AlwNI	CAGNNNCTG	3 cut(s)	505, 557, 1037
AoxI	GGCC	2 cut(s)	1247, 1276
ApeKI	GCWGC	3 cut(s)	61, 605, 1031
ApoI	RAATTY	2 cut(s)	544, 826
AspS9I	GGNCC	2 cut(s)	1059, 1248
AsuHPI	GGTGA	4 cut(s)	184, 697, 1252, 1409
AvaII	GGWCC	1 cut(s)	1059
BanII	GRGCYC	1 cut(s)	813
BarI	GAAGNNNNNNTAC	2 cut(s)	1187, 1219
BbrPI	CACGTG	1 cut(s)	1068
BbsI	GAAGAC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	1417
BbvI	GCAGC	3 cut(s)	48, 617, 1043
BccI	CCATC	3 cut(s)	121, 674, 1107
BciT130I	CCWGG	1 cut(s)	804
BciVI	GTATCC	1 cut(s)	636
BclI	TGATCA	2 cut(s)	258, 759
BcoDI	GTCTC	3 cut(s)	72, 362, 1335
BfaI	CTAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	1336
BfuI	GTATCC	1 cut(s)	636
BisI	GCNGC	6 cut(s)	62, 606, 978, 1032, 1212, 1276
BlsI	GCNGC	6 cut(s)	63, 607, 979, 1033, 1213, 1277
Bme1390I	CCNGG	1 cut(s)	804
Bme18I	GGWCC	1 cut(s)	1059
BmgT120I	GGNCC	2 cut(s)	1059, 1248
BmiI	GGNNCC	6 cut(s)	283, 586, 646, 663, 1060, 1250
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	568
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	705
BsaAI	YACGTR	1 cut(s)	1068
BsaBI	GATNNNNATC	1 cut(s)	1490
BsaI	GGTCTC	1 cut(s)	1335
BsaJI	CCNNGG	5 cut(s)	648, 1105, 1164, 1244, 1346
BsaXI	ACNNNNNCTCC	4 cut(s)	547, 577, 724, 754
Bsc4I	CCNNNNNNNGG	4 cut(s)	440, 998, 1154, 1352
Bse1I	ACTGG	5 cut(s)	358, 510, 959, 1003, 1463
Bse3DI	GCAATG	3 cut(s)	298, 472, 912
Bse8I	GATNNNNATC	1 cut(s)	1490
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	5 cut(s)	648, 1105, 1164, 1244, 1346
BseGI	GGATG	2 cut(s)	666, 1118
BseJI	GATNNNNATC	1 cut(s)	1490
BseLI	CCNNNNNNNGG	4 cut(s)	440, 998, 1154, 1352
BseMI	GCAATG	3 cut(s)	298, 472, 912
BseMII	CTCAG	1 cut(s)	1257
BseNI	ACTGG	5 cut(s)	358, 510, 959, 1003, 1463
BseRI	GAGGAG	3 cut(s)	294, 1181, 1240
BseXI	GCAGC	3 cut(s)	48, 617, 1043
BseYI	CCCAGC	1 cut(s)	1180
BsgI	GTGCAG	2 cut(s)	879, 1050
BshFI	GGCC	2 cut(s)	1249, 1278
BsiHKAI	GWGCWC	1 cut(s)	1417
BslFI	GGGAC	2 cut(s)	927, 1072
BslI	CCNNNNNNNGG	4 cut(s)	440, 998, 1154, 1352
BsmAI	GTCTC	3 cut(s)	72, 362, 1335
BsmFI	GGGAC	2 cut(s)	927, 1072
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	1249, 1278
Bso31I	GGTCTC	1 cut(s)	1335
Bsp1286I	GDGCHC	2 cut(s)	813, 1417
BspACI	CCGC	7 cut(s)	629, 888, 977, 1062, 1155, 1212, 1275
BspANI	GGCC	2 cut(s)	1249, 1278
BspCNI	CTCAG	1 cut(s)	1258
BspLI	GGNNCC	6 cut(s)	283, 586, 646, 663, 1060, 1250
BspPI	GGATC	5 cut(s)	983, 1088, 1265, 1445, 1514
BspTI	CTTAAG	1 cut(s)	1336
BspTNI	GGTCTC	1 cut(s)	1335
BsrDI	GCAATG	3 cut(s)	298, 472, 912
BsrI	ACTGG	5 cut(s)	358, 510, 959, 1003, 1463
BssECI	CCNNGG	5 cut(s)	648, 1105, 1164, 1244, 1346
BssT1I	CCWWGG	3 cut(s)	648, 1105, 1346
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	2 cut(s)	1028, 1445
BstAFI	CTTAAG	1 cut(s)	1336
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	1068
BstC8I	GCNNGC	4 cut(s)	603, 951, 1125, 1129
BstDEI	CTNAG	2 cut(s)	938, 1266
BstF5I	GGATG	2 cut(s)	666, 1118
BstMAI	GTCTC	3 cut(s)	72, 362, 1335
BstMWI	GCNNNNNNNGC	4 cut(s)	515, 659, 817, 1400
BstNI	CCWGG	1 cut(s)	804
BstSCI	CCNGG	1 cut(s)	802
BstV1I	GCAGC	3 cut(s)	48, 617, 1043
BstV2I	GAAGAC	1 cut(s)	568
BstX2I	RGATCY	2 cut(s)	1450, 1506
BstYI	RGATCY	2 cut(s)	1450, 1506
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	1249, 1278
BtsCI	GGATG	2 cut(s)	666, 1118
BtsIMutI	CAGTG	4 cut(s)	351, 503, 1263, 1450
Cac8I	GCNNGC	4 cut(s)	603, 951, 1125, 1129
CaiI	CAGNNNCTG	3 cut(s)	505, 557, 1037
Cfr13I	GGNCC	2 cut(s)	1059, 1248
Csp6I	GTAC	3 cut(s)	885, 1024, 1198
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	5 cut(s)	771, 1218, 1280, 1421, 1523
CviQI	GTAC	3 cut(s)	885, 1024, 1198
DdeI	CTNAG	2 cut(s)	938, 1266
DraI	TTTAAA	2 cut(s)	835, 1299
EaeI	YGGCCR	1 cut(s)	1276
Eco130I	CCWWGG	3 cut(s)	648, 1105, 1346
Eco24I	GRGCYC	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	1335
Eco47I	GGWCC	1 cut(s)	1059
Eco72I	CACGTG	1 cut(s)	1068
EcoO109I	RGGNCCY	1 cut(s)	1248
EcoRII	CCWGG	1 cut(s)	802
EcoT14I	CCWWGG	3 cut(s)	648, 1105, 1346
EcoT38I	GRGCYC	1 cut(s)	813
ErhI	CCWWGG	3 cut(s)	648, 1105, 1346
FaeI	CATG	5 cut(s)	774, 1221, 1283, 1424, 1526
FalI	AAGNNNNNCTT	4 cut(s)	864, 896, 1330, 1362
FaqI	GGGAC	2 cut(s)	927, 1072
FatI	CATG	5 cut(s)	770, 1217, 1279, 1420, 1522
FbaI	TGATCA	2 cut(s)	258, 759
Fnu4HI	GCNGC	6 cut(s)	62, 606, 978, 1032, 1212, 1276
FokI	GGATG	2 cut(s)	653, 1125
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	6 cut(s)	62, 606, 978, 1032, 1212, 1276
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	6 cut(s)	62, 606, 978, 1032, 1212, 1276
GsaI	CCCAGC	1 cut(s)	1184
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	2 cut(s)	1249, 1278
Hin1II	CATG	5 cut(s)	774, 1221, 1283, 1424, 1526
HinfI	GANTC	4 cut(s)	23, 414, 560, 1088
HphI	GGTGA	4 cut(s)	184, 697, 1252, 1409
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	6 cut(s)	160, 300, 581, 824, 1093, 1189
Hpy188III	TCNNGA	5 cut(s)	722, 869, 1079, 1100, 1454
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	6 cut(s)	81, 250, 317, 866, 901, 1403
HpyCH4III	ACNGT	2 cut(s)	1028, 1445
HpyCH4IV	ACGT	2 cut(s)	633, 1067
HpyCH4V	TGCA	8 cut(s)	344, 470, 843, 860, 1031, 1131, 1221, 1403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	515, 659, 817, 1400
HpyF3I	CTNAG	2 cut(s)	938, 1266
HpySE526I	ACGT	2 cut(s)	633, 1067
Hsp92II	CATG	5 cut(s)	774, 1221, 1283, 1424, 1526
Ksp22I	TGATCA	2 cut(s)	258, 759
LmnI	GCTCC	6 cut(s)	281, 301, 379, 644, 667, 825
Lsp1109I	GCAGC	3 cut(s)	48, 617, 1043
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	633, 1067
MaeIII	GTNAC	1 cut(s)	634
MboII	GAAGA	9 cut(s)	16, 43, 108, 144, 147, 550, 568, 1315, 1460
MfeI	CAATTG	1 cut(s)	639
MflI	RGATCY	2 cut(s)	1450, 1506
MhlI	GDGCHC	2 cut(s)	813, 1417
MlyI	GAGTC	2 cut(s)	554, 1082
MmeI	TCCRAC	2 cut(s)	268, 1016
MseI	TTAA	8 cut(s)	524, 834, 1014, 1298, 1329, 1337, 1464, 1543
MslI	CAYNNNNRTG	2 cut(s)	905, 1136
MspCI	CTTAAG	1 cut(s)	1336
MspR9I	CCNGG	1 cut(s)	804
MunI	CAATTG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	4 cut(s)	515, 659, 817, 1400
NlaIII	CATG	5 cut(s)	774, 1221, 1283, 1424, 1526
NlaIV	GGNNCC	6 cut(s)	283, 586, 646, 663, 1060, 1250
PctI	GAATGC	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	23, 414
PflMI	CCANNNNNTGG	1 cut(s)	998
PkrI	GCNGC	6 cut(s)	63, 607, 979, 1033, 1213, 1277
PleI	GAGTC	2 cut(s)	554, 1082
PmaCI	CACGTG	1 cut(s)	1068
PmlI	CACGTG	1 cut(s)	1068
PpsI	GAGTC	2 cut(s)	554, 1082
Ppu21I	YACGTR	1 cut(s)	1068
PsiI	TTATAA	1 cut(s)	1047
Psp6I	CCWGG	1 cut(s)	802
PspCI	CACGTG	1 cut(s)	1068
PspFI	CCCAGC	1 cut(s)	1180
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	6 cut(s)	283, 586, 646, 663, 1060, 1250
PspPI	GGNCC	2 cut(s)	1059, 1248
PstNI	CAGNNNCTG	3 cut(s)	505, 557, 1037
PsuI	RGATCY	2 cut(s)	1450, 1506
RsaI	GTAC	3 cut(s)	886, 1025, 1199
RsaNI	GTAC	3 cut(s)	885, 1024, 1198
RseI	CAYNNNNRTG	2 cut(s)	905, 1136
SaqAI	TTAA	8 cut(s)	524, 834, 1014, 1298, 1329, 1337, 1464, 1543
SatI	GCNGC	6 cut(s)	62, 606, 978, 1032, 1212, 1276
Sau96I	GGNCC	2 cut(s)	1059, 1248
SchI	GAGTC	2 cut(s)	554, 1082
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	2 cut(s)	813, 1417
SfaNI	GCATC	1 cut(s)	662
SinI	GGWCC	1 cut(s)	1059
SmiMI	CAYNNNNRTG	2 cut(s)	905, 1136
SmlI	CTYRAG	2 cut(s)	720, 1336
SmoI	CTYRAG	2 cut(s)	720, 1336
SsiI	CCGC	7 cut(s)	629, 888, 977, 1062, 1155, 1212, 1275
SspI	AATATT	4 cut(s)	33, 685, 1318, 1517
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	802
StyI	CCWWGG	3 cut(s)	648, 1105, 1346
TaaI	ACNGT	2 cut(s)	1028, 1445
TaiI	ACGT	2 cut(s)	636, 1070
TaqI	TCGA	4 cut(s)	783, 813, 870, 1074
TatI	WGTACW	1 cut(s)	1197
TauI	GCSGC	3 cut(s)	980, 1214, 1278
TfiI	GAWTC	2 cut(s)	23, 414
Tru1I	TTAA	8 cut(s)	524, 834, 1014, 1298, 1329, 1337, 1464, 1543
Tru9I	TTAA	8 cut(s)	524, 834, 1014, 1298, 1329, 1337, 1464, 1543
TscAI	CASTG	4 cut(s)	358, 510, 1270, 1450
TseI	GCWGC	3 cut(s)	61, 605, 1031
TspDTI	ATGAA	5 cut(s)	17, 336, 391, 819, 1206
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	4 cut(s)	358, 510, 1270, 1450
Van91I	CCANNNNNTGG	1 cut(s)	998
Vha464I	CTTAAG	1 cut(s)	1336
VpaK11BI	GGWCC	1 cut(s)	1059
XapI	RAATTY	2 cut(s)	544, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1188
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.