Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014618.1

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 866

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014618.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

gatatcaagagggttttgagaagatttgggagcaacatcatcttctttaatggcttaagagacccttggagtggtggaggggtgctgaacaatatttccaagaggatagtagcaattgttgcaaaagaaggtgctcaccatgttgacttgaggttcaaaactagagaagatccagaatggcttaacgatgtgaggaagcaagagatcaagatcattggaaagtggatctcagaatattatcatgaccttgctgataaacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

87

Amino Acids

10.2

Weight (kDa)

9.63

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	164, 233
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflII	CTTAAG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	157
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	164, 233
AsuHPI	GGTGA	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse8I	GATNNNNATC	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	65
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	54
Bso31I	GGTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	169, 204, 210, 225
BspCNI	CTCAG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	241
BspPI	GGATC	2 cut(s)	164, 233
BspTI	CTTAAG	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	169, 204, 210, 225
BssT1I	CCWWGG	1 cut(s)	65
BstAFI	CTTAAG	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	229
BstKTI	GATC	4 cut(s)	172, 207, 213, 228
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	169, 204, 210, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	169, 225
BstYI	RGATCY	2 cut(s)	169, 225
CciI	TCATGA	1 cut(s)	241
CviAII	CATG	2 cut(s)	140, 242
CviJI	RGCY	2 cut(s)	54, 181
CviKI_1	RGCY	2 cut(s)	54, 181
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	4 cut(s)	171, 206, 212, 227
DpnII	GATC	4 cut(s)	169, 204, 210, 225
Eco130I	CCWWGG	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	143, 245
FaiI	YATR	2 cut(s)	141, 243
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	2 cut(s)	139, 241
FspBI	CTAG	1 cut(s)	162
Hin1II	CATG	2 cut(s)	143, 245
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	7, 173, 208, 242
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	143, 245
Kzo9I	GATC	4 cut(s)	169, 204, 210, 225
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	1 cut(s)	186
MaeI	CTAG	1 cut(s)	162
MalI	GATC	4 cut(s)	171, 206, 212, 227
MboI	GATC	4 cut(s)	169, 204, 210, 225
MboII	GAAGA	3 cut(s)	33, 34, 179
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	2 cut(s)	169, 225
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	5 cut(s)	3, 71, 96, 144, 186
MseI	TTAA	3 cut(s)	48, 56, 183
MspCI	CTTAAG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	4 cut(s)	169, 204, 210, 225
NlaIII	CATG	2 cut(s)	143, 245
PagI	TCATGA	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	169, 225
SaqAI	TTAA	3 cut(s)	48, 56, 183
Sau3AI	GATC	4 cut(s)	169, 204, 210, 225
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	3 cut(s)	133, 155, 249
SmlI	CTYRAG	2 cut(s)	55, 148
SmoI	CTYRAG	2 cut(s)	55, 148
Sse9I	AATT	1 cut(s)	114
SspI	AATATT	2 cut(s)	94, 236
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	65
TasI	AATT	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	48, 56, 183
Tru9I	TTAA	3 cut(s)	48, 56, 183
Vha464I	CTTAAG	1 cut(s)	55
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.