Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Reverse (-)

19535203 .. 19538957

Gene Structure 3755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAAAAAGATGACAGAATCTAGGTCCCCATTTCTTTTCTGGTTCTCTTTCTTCTGTTTGCTTCATTCTCTTCCTGTCTACTCTGCCAAATCCTCACATCGTAGATTCCCATCTTTACTGATATCCCCAGGAGAAAAGATATCACCTTCTGCTGATCAAAACCAACTTTACAGAACCAAATACTTCACCCAAGTCCTTGATCATTTCAATTACTATCCCAAGAGCAGTGAAACTTTCCAACAGAGATATTTGATAAATGATACGTTCTGGGGAGGCGCCAAGAGCAATGCTCCAATCTTTGTTTACACTGGTAATGAAGGGAACATAGAATGGTTTGCGGAGAACACTGGTTTTCTGTACGACACGGCTCCCCATTTTAATGCCCTCATCATTTTCATTGAGCATAGGTTCTATGGAAAGTCTTTACCTTTTGGAGGCAGGAAAGATGTGGCTTATAGCAATGCAAGTACACTGGGATATCTAAGCTCCACACAAGCCTTGGCAGATTATGCTTCCTTAATTATTGATTTGAAGAAGAATTTGACAGCAACGAACTCACCTGTAGTGGTTTTTGGAGGTTCCTATGGAGGAATGCTGGCAGCATGGTTTAGGTTGAAATATCCCCATGTTACAATTGGAGCGTTGGCATCATCTTCTCCGATCCTCAATTTTGAGAACATAACATCTCCAGATAGCTTCTACAATATAGTCACTAAAGACTTTAGGAGTGAGAGTGAAAGTTGTTACAGAGTGATCAAGGGCTCATGGGAAAATATCAAAGACACCGCAAAGCAACCTGGAGGGCTTGAGATACTCCGGAAATCGTTTAAAATATGCACGAATAATATTAGCGTAGATGATCTTCAAAATTGGCTTGAAACTGCTTATATTTACACAGCAATGACGGATTATCCTACTCCCTCAAATTTCATGAGTCCCATGCCAGCATATCCAGTGAAACAGATGTGTAAGGCAATAGATGATCCAACAACGGGGAATGATACATTTGCAAAGCTATATGGCGCAGCTACTGTCTACTATAATTACAGTGGGACGGCCAAGTGTTTCGATCTTAATGATGAATCAGATCCTCACGACCTCGGAGGATGGGATTGGCAGGTAGGGAGTTCTTTTTTTTTTCTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

382

Amino Acids

43.17

Weight (kDa)

6.39

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	64 - 352	8.9e-67	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1108
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	2 cut(s)	78, 1035
AccIII	TCCGGA	1 cut(s)	816
AciI	CCGC	2 cut(s)	338, 786
AclWI	GGATC	3 cut(s)	655, 977, 1082
AcoI	YGGCCR	1 cut(s)	1056
AcsI	RAATTY	2 cut(s)	538, 925
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	359, 469
AfiI	CCNNNNNNNGG	2 cut(s)	434, 992
AgsI	TTSAA	5 cut(s)	208, 532, 616, 866, 878
AjnI	CCWGG	2 cut(s)	127, 796
AluBI	AGCT	4 cut(s)	486, 696, 1015, 1028
AluI	AGCT	4 cut(s)	486, 696, 1015, 1028
AlwI	GGATC	3 cut(s)	655, 977, 1082
AlwNI	CAGNNNCTG	1 cut(s)	1031
Aor13HI	TCCGGA	1 cut(s)	816
AoxI	GGCC	1 cut(s)	1056
ApeKI	GCWGC	2 cut(s)	599, 1025
ApoI	RAATTY	2 cut(s)	538, 925
AspLEI	GCGC	2 cut(s)	278, 1025
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	135, 178, 549
AvaII	GGWCC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	764
BarI	GAAGNNNNNNTAC	2 cut(s)	846, 878
BbvI	GCAGC	2 cut(s)	611, 1037
BccI	CCATC	2 cut(s)	118, 1101
BceAI	ACGGC	2 cut(s)	381, 1071
BciT130I	CCWGG	2 cut(s)	129, 798
BclI	TGATCA	3 cut(s)	154, 199, 753
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	1108
BisI	GCNGC	2 cut(s)	600, 1026
BlsI	GCNGC	2 cut(s)	601, 1027
Bme1390I	CCNGG	2 cut(s)	129, 798
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	4 cut(s)	26, 277, 369, 580
BmrFI	CCNGG	2 cut(s)	129, 798
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	2 cut(s)	672, 819
BpuEI	CTTGAG	1 cut(s)	827
BsaBI	GATNNNNATC	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	127, 498, 1099
BsaWI	WCCGGW	1 cut(s)	816
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 992
Bse1I	ACTGG	4 cut(s)	313, 352, 477, 953
Bse3DI	GCAATG	3 cut(s)	292, 466, 906
Bse8I	GATNNNNATC	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	816
BseBI	CCWGG	2 cut(s)	129, 798
BseDI	CCNNGG	3 cut(s)	127, 498, 1099
BseGI	GGATG	1 cut(s)	1112
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	434, 992
BseMI	GCAATG	3 cut(s)	292, 466, 906
BseNI	ACTGG	4 cut(s)	313, 352, 477, 953
BseXI	GCAGC	2 cut(s)	611, 1037
BshFI	GGCC	1 cut(s)	1058
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	817
BslFI	GGGAC	3 cut(s)	10, 921, 1066
BslI	CCNNNNNNNGG	2 cut(s)	434, 992
BsmFI	GGGAC	3 cut(s)	10, 921, 1066
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	1058
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp13I	TCCGGA	1 cut(s)	816
Bsp143I	GATC	8 cut(s)	154, 199, 660, 753, 859, 982, 1069, 1087
BspACI	CCGC	2 cut(s)	338, 786
BspANI	GGCC	1 cut(s)	1058
BspEI	TCCGGA	1 cut(s)	816
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	4 cut(s)	26, 277, 369, 580
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	3 cut(s)	655, 977, 1082
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	3 cut(s)	292, 466, 906
BsrI	ACTGG	4 cut(s)	313, 352, 477, 953
BssECI	CCNNGG	3 cut(s)	127, 498, 1099
BssMI	GATC	8 cut(s)	154, 199, 660, 753, 859, 982, 1069, 1087
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	129, 798
Bst4CI	ACNGT	2 cut(s)	1033, 1049
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	597, 945
BstDEI	CTNAG	1 cut(s)	482
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	1112
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	278, 1025
BstKTI	GATC	8 cut(s)	157, 202, 663, 756, 862, 985, 1072, 1090
BstMBI	GATC	8 cut(s)	154, 199, 660, 753, 859, 982, 1069, 1087
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 509
BstNI	CCWGG	2 cut(s)	129, 798
BstSCI	CCNGG	2 cut(s)	127, 796
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	2 cut(s)	611, 1037
BstX2I	RGATCY	1 cut(s)	1087
BstYI	RGATCY	1 cut(s)	1087
BsuRI	GGCC	1 cut(s)	1058
BtsCI	GGATG	1 cut(s)	1112
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	6 cut(s)	232, 306, 345, 470, 960, 1054
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	2 cut(s)	597, 945
CaiI	CAGNNNCTG	1 cut(s)	1031
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	2 cut(s)	278, 1025
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	358, 468
CviAII	CATG	5 cut(s)	603, 626, 765, 931, 940
CviQI	GTAC	2 cut(s)	358, 468
DdeI	CTNAG	1 cut(s)	482
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	8 cut(s)	156, 201, 662, 755, 861, 984, 1071, 1089
DpnII	GATC	8 cut(s)	154, 199, 660, 753, 859, 982, 1069, 1087
DraI	TTTAAA	1 cut(s)	829
EaeI	YGGCCR	1 cut(s)	1056
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	764
Eco32I	GATATC	3 cut(s)	123, 141, 479
Eco47I	GGWCC	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	127, 796
EcoRV	GATATC	3 cut(s)	123, 141, 479
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	764
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	5 cut(s)	606, 629, 768, 934, 943
FaqI	GGGAC	3 cut(s)	10, 921, 1066
FatI	CATG	5 cut(s)	602, 625, 764, 930, 939
FbaI	TGATCA	3 cut(s)	154, 199, 753
FblI	GTMKAC	2 cut(s)	78, 1035
Fnu4HI	GCNGC	2 cut(s)	600, 1026
FokI	GGATG	1 cut(s)	1119
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	2 cut(s)	600, 1026
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	2 cut(s)	277, 1024
GluI	GCNGC	2 cut(s)	600, 1026
GsuI	CTGGAG	2 cut(s)	672, 819
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	1058
HapII	CCGG	1 cut(s)	817
HhaI	GCGC	2 cut(s)	278, 1025
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	606, 629, 768, 934, 943
Hin6I	GCGC	2 cut(s)	276, 1023
HinP1I	GCGC	2 cut(s)	276, 1023
HinfI	GANTC	4 cut(s)	17, 105, 934, 1082
HpaII	CCGG	1 cut(s)	817
HphI	GGTGA	3 cut(s)	135, 178, 549
Hpy166II	GTNNAC	4 cut(s)	79, 304, 470, 1036
Hpy188I	TCNGA	3 cut(s)	660, 1087, 1103
Hpy188III	TCNNGA	4 cut(s)	689, 817, 931, 1094
Hpy8I	GTNNAC	4 cut(s)	79, 304, 470, 1036
HpyAV	CCTTC	2 cut(s)	156, 311
HpyCH4III	ACNGT	2 cut(s)	1033, 1049
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	464, 837, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 509
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	5 cut(s)	606, 629, 768, 934, 943
HspAI	GCGC	2 cut(s)	276, 1023
KasI	GGCGCC	1 cut(s)	275
Kpn2I	TCCGGA	1 cut(s)	816
Ksp22I	TGATCA	3 cut(s)	154, 199, 753
Kzo9I	GATC	8 cut(s)	154, 199, 660, 753, 859, 982, 1069, 1087
LmnI	GCTCC	4 cut(s)	295, 373, 491, 638
Lsp1109I	GCAGC	2 cut(s)	611, 1037
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	628, 709, 743
MalI	GATC	8 cut(s)	156, 201, 662, 755, 861, 984, 1071, 1089
MboI	GATC	8 cut(s)	154, 199, 660, 753, 859, 982, 1069, 1087
MboII	GAAGA	6 cut(s)	43, 62, 544, 547, 645, 854
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	1087
MhlI	GDGCHC	1 cut(s)	764
MluCI	AATT	8 cut(s)	208, 519, 538, 633, 667, 868, 925, 1042
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	943
MmeI	TCCRAC	2 cut(s)	262, 1010
MroI	TCCGGA	1 cut(s)	816
MseI	TTAA	4 cut(s)	378, 518, 828, 1074
MslI	CAYNNNNRTG	2 cut(s)	378, 899
MspI	CCGG	1 cut(s)	817
MspR9I	CCNGG	2 cut(s)	129, 798
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	129, 798
MwoI	GCNNNNNNNGC	2 cut(s)	282, 509
NarI	GGCGCC	1 cut(s)	276
NdeII	GATC	8 cut(s)	154, 199, 660, 753, 859, 982, 1069, 1087
NlaIII	CATG	5 cut(s)	606, 629, 768, 934, 943
NlaIV	GGNNCC	4 cut(s)	26, 277, 369, 580
NmuCI	GTSAC	1 cut(s)	709
PagI	TCATGA	1 cut(s)	930
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	3 cut(s)	17, 105, 1082
PkrI	GCNGC	2 cut(s)	601, 1027
PleI	GAGTC	1 cut(s)	942
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	942
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	127, 796
PspGI	CCWGG	2 cut(s)	127, 796
PspN4I	GGNNCC	4 cut(s)	26, 277, 369, 580
PspPI	GGNCC	1 cut(s)	24
PspPPI	RGGWCCY	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	1031
PsuI	RGATCY	1 cut(s)	1087
RsaI	GTAC	2 cut(s)	359, 469
RsaNI	GTAC	2 cut(s)	358, 468
RseI	CAYNNNNRTG	2 cut(s)	378, 899
SaqAI	TTAA	4 cut(s)	378, 518, 828, 1074
SatI	GCNGC	2 cut(s)	600, 1026
Sau3AI	GATC	8 cut(s)	154, 199, 660, 753, 859, 982, 1069, 1087
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	943
ScrFI	CCNGG	2 cut(s)	129, 798
SduI	GDGCHC	1 cut(s)	764
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	378, 899
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	8 cut(s)	208, 519, 538, 633, 667, 868, 925, 1042
SsiI	CCGC	2 cut(s)	338, 786
SspDI	GGCGCC	1 cut(s)	275
SspI	AATATT	1 cut(s)	847
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	127, 796
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	1033, 1049
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	1068
TasI	AATT	8 cut(s)	208, 519, 538, 633, 667, 868, 925, 1042
TatI	WGTACW	1 cut(s)	467
TfiI	GAWTC	3 cut(s)	17, 105, 1082
Tru1I	TTAA	4 cut(s)	378, 518, 828, 1074
Tru9I	TTAA	4 cut(s)	378, 518, 828, 1074
TscAI	CASTG	6 cut(s)	232, 313, 352, 477, 960, 1054
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	2 cut(s)	599, 1025
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	6 cut(s)	17, 53, 330, 385, 919, 1095
TspGWI	ACGGA	1 cut(s)	920
TspRI	CASTG	6 cut(s)	232, 313, 352, 477, 960, 1054
VpaK11BI	GGWCC	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	2 cut(s)	538, 925
XcmI	CCANNNNNNNNNTGG	3 cut(s)	36, 496, 632
XmiI	GTMKAC	2 cut(s)	78, 1035
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.