FvH4_6g48670

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
36631690 .. 36635715
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48670.t5

Sequence Viewer

Length: 1536 bp
ATGGCAGAGTCTGGTTCCCCATTTCTTTTCTGGTTCTCTTTCTTCTGTTTGCTTCATTCTCTTCCTGTCTATTATTCCATATCTCCACCTCCTAGATTCCCATCTTCACTGATATCCCCAGAAGAAAAGGTATCACTTGCTGCTCGTCAAAACCAACTTTACAGAACCAAATACTTCACCCAAATCCTTGATCATTTCAATTACTATCCCAAAAGCTATGACACTTTCCAGCAGAGGTATTTGATAAATGATACGTTCTGGGGAGGCGCCAAAAGCAATGCTCCAATCTTTGTCTACACTGGTAATGAAGGGATCATAGAATGGTTTGCGCAGAACACTGGTTTTCTGTATGAGACAGCTCCCCATTTTAAAGCCCTCATCATTTTCATCGAGCATAGGTTCTATGGAAAGTCTATACCTTTTGGGGGCAAGAAAGATGTGGCTTATAGCAATGCAACTACACTTGGATATCTAAGCTCCACACAAGCCTTGGCAGATTATGCTTCCTTAATTATTGATTTGAAAAAGAACTTGACAGCAACGGACTCACCCGTAGTGGTCTTTGGAGGTTCCTATGGAGGAATGCTAGCAGCATGGTTTAGGTTGAAGTATCCCCATGTAACAATCGGAGCTTTGGCATCATCTTCTCCAATCCTCAATTTTGAGAATATTACATCTCCGTATAGCTTCAACAATATAGTGACCAAAGACTTTCGGAGTGAGAGTGAGAGTTGTTACAAAGTGATCAAAGGCTCGTGGCAACAGATCGAAGAGACCGCAAACCAACCTGGAGGGATTGAGTTACTCCGGAAATCGTTCAGAATATGCAAGAATCATTTTACCGGGTATGATCTTGAAGGTTGGCTTGAAACCGCTTACATTTACACAGCAATGACAGATTATCCTACTCCCTCAAATTTCTTAAGTCCCATGCCAGCATATCCAGTGAAACAGATGTGTAAGGCAATAGATGATCCAGCGACAGGAAATGATACATTTGCTAAGTTATTTGGTGCAGCTACTGTATACTATAATTACACTGGAACCGCTACATGTTTCGATCCTAATGATAACTCAGATCCTCACGACCTTGGAGGATGGCAATGGCAGGCGTGTACAGAGATGATAATGCCAACAAGTGGTAACAATGAAGAGAGCATGTTCCCGCCTTCTGAGTGGCGATACCAAGGTCGAGTCTCTTATTGCGAAGGGGCTTATGGCGTCGAACCTAGGCCTAATTGGATCACCACCGAGTTTGGCGGCCATGATATCAAAAGGGTTTTGAGAAGATATGGGAGCAACATTATCTTCTTTAATGGTTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTGAGCAATATTTCCGAGAGCATAGTAGCAATTGTTGCAAAAGAAGGTGCTCACCATGTAGATTTGAGGTTCAAAACTAGTGAAGATCCAGAATGGCTTAAAGATGTGAGGAAGCAAGAAATCGGGATCATTGCAAAATGGATCTCAGAATATTATCATGACCTTGCTCTTGATCTACTATCTTAA

Protein Analysis

512

Amino Acids

57.83

Weight (kDa)

5.72

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 15 - 354 3.2e-51 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 266
AccB7I CCANNNNNTGG 1 cut(s) 1139
AccI GTMKAC 2 cut(s) 294, 1026
AccIII TCCGGA 1 cut(s) 807
AciI CCGC 5 cut(s) 777, 873, 1047, 1166, 1260
AclWI GGATC 8 cut(s) 320, 968, 1055, 1073, 1250, 1430, 1484, 1499
AcoI YGGCCR 1 cut(s) 1261
AcsI RAATTY 1 cut(s) 916
AcyI GRCGYC 2 cut(s) 267, 1221
AfaI GTAC 1 cut(s) 1117
AfiI CCNNNNNNNGG 4 cut(s) 425, 983, 1139, 1337
AflII CTTAAG 1 cut(s) 922
AflIII ACRYGT 1 cut(s) 1052
AgsI TTSAA 7 cut(s) 199, 523, 607, 691, 857, 869, 1423
AhlI ACTAGT 1 cut(s) 1427
AjnI CCWGG 1 cut(s) 787
AluBI AGCT 6 cut(s) 216, 359, 477, 632, 687, 1019
AluI AGCT 6 cut(s) 216, 359, 477, 632, 687, 1019
Alw21I GWGCWC 1 cut(s) 1402
Alw26I GTCTC 4 cut(s) 347, 767, 1201, 1320
AlwI GGATC 8 cut(s) 320, 968, 1055, 1073, 1250, 1430, 1484, 1499
AlwNI CAGNNNCTG 2 cut(s) 11, 1022
Aor13HI TCCGGA 1 cut(s) 807
AoxI GGCC 2 cut(s) 1232, 1261
ApeKI GCWGC 3 cut(s) 140, 590, 1016
ApoI RAATTY 1 cut(s) 916
Asp700I GAANNNNTTC 1 cut(s) 815
AspA2I CCTAGG 1 cut(s) 1229
AspLEI GCGC 2 cut(s) 269, 331
AsuC2I CCSGG 1 cut(s) 844
AsuHPI GGTGA 4 cut(s) 169, 540, 1237, 1394
AsuNHI GCTAGC 1 cut(s) 586
AvrII CCTAGG 1 cut(s) 1229
BaeI ACNNNNGTAYC 2 cut(s) 1174, 1207
BanI GGYRCC 1 cut(s) 266
BauI CACGAG 1 cut(s) 754
Bbv12I GWGCWC 1 cut(s) 1402
BbvI GCAGC 3 cut(s) 127, 602, 1028
BccI CCATC 2 cut(s) 109, 1092
BciT130I CCWGG 1 cut(s) 789
BciVI GTATCC 1 cut(s) 621
BclI TGATCA 2 cut(s) 190, 744
BcnI CCSGG 1 cut(s) 844
BcoDI GTCTC 4 cut(s) 347, 767, 1201, 1320
BcuI ACTAGT 1 cut(s) 1427
BfaI CTAG 4 cut(s) 93, 587, 1230, 1428
BfoI RGCGCY 1 cut(s) 270
BfrI CTTAAG 1 cut(s) 922
BfuI GTATCC 1 cut(s) 621
BisI GCNGC 4 cut(s) 141, 591, 1017, 1261
BlnI CCTAGG 1 cut(s) 1229
BlpI GCTNAGC 1 cut(s) 1352
BlsI GCNGC 4 cut(s) 142, 592, 1018, 1262
Bme1390I CCNGG 2 cut(s) 789, 844
BmiI GGNNCC 4 cut(s) 16, 268, 571, 1045
BmrFI CCNGG 2 cut(s) 789, 844
BmsI GCATC 1 cut(s) 647
BmtI GCTAGC 1 cut(s) 590
BpmI CTGGAG 1 cut(s) 810
Bpu1102I GCTNAGC 1 cut(s) 1352
BpuMI CCSGG 1 cut(s) 844
BsaBI GATNNNNATC 1 cut(s) 100
BsaHI GRCGYC 2 cut(s) 267, 1221
BsaI GGTCTC 2 cut(s) 767, 1320
BsaJI CCNNGG 5 cut(s) 489, 1090, 1186, 1229, 1331
BsaWI WCCGGW 1 cut(s) 807
BsaXI ACNNNNNCTCC 2 cut(s) 709, 739
Bsc4I CCNNNNNNNGG 4 cut(s) 425, 983, 1139, 1337
Bse1I ACTGG 4 cut(s) 304, 343, 944, 1045
Bse3DI GCAATG 5 cut(s) 283, 457, 897, 1109, 1479
Bse8I GATNNNNATC 1 cut(s) 100
BseAI TCCGGA 1 cut(s) 807
BseBI CCWGG 1 cut(s) 789
BseDI CCNNGG 5 cut(s) 489, 1090, 1186, 1229, 1331
BseGI GGATG 1 cut(s) 1103
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 4 cut(s) 425, 983, 1139, 1337
BseMI GCAATG 5 cut(s) 283, 457, 897, 1109, 1479
BseMII CTCAG 4 cut(s) 1089, 1164, 1343, 1509
BseNI ACTGG 4 cut(s) 304, 343, 944, 1045
BseXI GCAGC 3 cut(s) 127, 602, 1028
BsgI GTGCAG 1 cut(s) 1035
BshFI GGCC 2 cut(s) 1234, 1263
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 1402
BsiSI CCGG 2 cut(s) 808, 843
BslFI GGGAC 1 cut(s) 912
BslI CCNNNNNNNGG 4 cut(s) 425, 983, 1139, 1337
BsmAI GTCTC 4 cut(s) 347, 767, 1201, 1320
BsmFI GGGAC 1 cut(s) 912
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 2 cut(s) 1234, 1263
Bso31I GGTCTC 2 cut(s) 767, 1320
Bsp1286I GDGCHC 1 cut(s) 1402
Bsp13I TCCGGA 1 cut(s) 807
Bsp1407I TGTACA 1 cut(s) 1115
Bsp1720I GCTNAGC 1 cut(s) 1352
BspACI CCGC 5 cut(s) 777, 873, 1047, 1166, 1260
BspANI GGCC 2 cut(s) 1234, 1263
BspCNI CTCAG 4 cut(s) 1088, 1165, 1344, 1508
BspEI TCCGGA 1 cut(s) 807
BspHI TCATGA 1 cut(s) 1507
BspLI GGNNCC 4 cut(s) 16, 268, 571, 1045
BspOI GCTAGC 1 cut(s) 590
BspPI GGATC 8 cut(s) 320, 968, 1055, 1073, 1250, 1430, 1484, 1499
BspT107I GGYRCC 1 cut(s) 266
BspTI CTTAAG 1 cut(s) 922
BspTNI GGTCTC 2 cut(s) 767, 1320
BsrDI GCAATG 5 cut(s) 283, 457, 897, 1109, 1479
BsrGI TGTACA 1 cut(s) 1115
BsrI ACTGG 4 cut(s) 304, 343, 944, 1045
BssECI CCNNGG 5 cut(s) 489, 1090, 1186, 1229, 1331
BssNAI GTATAC 1 cut(s) 1027
BssNI GRCGYC 2 cut(s) 267, 1221
BssSI CACGAG 1 cut(s) 754
BssT1I CCWWGG 5 cut(s) 489, 1090, 1186, 1229, 1331
Bst1107I GTATAC 1 cut(s) 1027
Bst2BI CACGAG 1 cut(s) 754
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 1 cut(s) 1024
Bst6I CTCTTC 3 cut(s) 66, 765, 1146
BstACI GRCGYC 2 cut(s) 267, 1221
BstAFI CTTAAG 1 cut(s) 922
BstAPI GCANNNNNTGC 2 cut(s) 500, 1385
BstAUI TGTACA 1 cut(s) 1115
BstC8I GCNNGC 3 cut(s) 588, 936, 1110
BstDEI CTNAG 6 cut(s) 473, 1002, 1075, 1173, 1352, 1495
BstF5I GGATG 1 cut(s) 1103
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 269, 331
BstMAI GTCTC 4 cut(s) 347, 767, 1201, 1320
BstMWI GCNNNNNNNGC 3 cut(s) 273, 500, 1385
BstNI CCWGG 1 cut(s) 789
BstNSI RCATGY 2 cut(s) 1056, 1162
BstSCI CCNGG 2 cut(s) 787, 842
BstV1I GCAGC 3 cut(s) 127, 602, 1028
BstX2I RGATCY 3 cut(s) 1078, 1435, 1491
BstYI RGATCY 3 cut(s) 1078, 1435, 1491
BstZ17I GTATAC 1 cut(s) 1027
BsuI GTATCC 1 cut(s) 621
BsuRI GGCC 2 cut(s) 1234, 1263
BtsCI GGATG 1 cut(s) 1103
BtsIMutI CAGTG 5 cut(s) 107, 297, 336, 951, 1038
Cac8I GCNNGC 3 cut(s) 588, 936, 1110
CaiI CAGNNNCTG 2 cut(s) 11, 1022
CciI TCATGA 1 cut(s) 1507
CfoI GCGC 2 cut(s) 269, 331
CseI GACGC 1 cut(s) 1210
Csp6I GTAC 1 cut(s) 1116
CspCI CAANNNNNGTGG 2 cut(s) 1237, 1272
CviAII CATG 8 cut(s) 594, 617, 931, 1053, 1159, 1265, 1406, 1508
CviQI GTAC 1 cut(s) 1116
DdeI CTNAG 6 cut(s) 473, 1002, 1075, 1173, 1352, 1495
DinI GGCGCC 1 cut(s) 268
DraI TTTAAA 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 1261
Eam1104I CTCTTC 3 cut(s) 66, 765, 1146
EarI CTCTTC 3 cut(s) 66, 765, 1146
Eco130I CCWWGG 5 cut(s) 489, 1090, 1186, 1229, 1331
Eco147I AGGCCT 1 cut(s) 1234
Eco31I GGTCTC 2 cut(s) 767, 1320
Eco32I GATATC 3 cut(s) 114, 470, 1270
EcoRII CCWGG 1 cut(s) 787
EcoRV GATATC 3 cut(s) 114, 470, 1270
EcoT14I CCWWGG 5 cut(s) 489, 1090, 1186, 1229, 1331
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 5 cut(s) 489, 1090, 1186, 1229, 1331
FaeI CATG 8 cut(s) 597, 620, 934, 1056, 1162, 1268, 1409, 1511
FalI AAGNNNNNCTT 4 cut(s) 849, 881, 1315, 1347
FaqI GGGAC 1 cut(s) 912
FatI CATG 8 cut(s) 593, 616, 930, 1052, 1158, 1264, 1405, 1507
FauI CCCGC 1 cut(s) 1173
FbaI TGATCA 2 cut(s) 190, 744
FblI GTMKAC 2 cut(s) 294, 1026
Fnu4HI GCNGC 4 cut(s) 141, 591, 1017, 1261
FokI GGATG 1 cut(s) 1110
Fsp4HI GCNGC 4 cut(s) 141, 591, 1017, 1261
FspBI CTAG 4 cut(s) 93, 587, 1230, 1428
FspI TGCGCA 1 cut(s) 330
GlaI GCGC 2 cut(s) 268, 330
GluI GCNGC 4 cut(s) 141, 591, 1017, 1261
GsuI CTGGAG 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 1234, 1263
HapII CCGG 2 cut(s) 808, 843
HgaI GACGC 1 cut(s) 1210
HhaI GCGC 2 cut(s) 269, 331
Hin1I GRCGYC 2 cut(s) 267, 1221
Hin1II CATG 8 cut(s) 597, 620, 934, 1056, 1162, 1268, 1409, 1511
Hin6I GCGC 2 cut(s) 267, 329
HinP1I GCGC 2 cut(s) 267, 329
HinfI GANTC 5 cut(s) 8, 96, 545, 832, 1194
HpaII CCGG 2 cut(s) 808, 843
HphI GGTGA 4 cut(s) 169, 540, 1237, 1394
Hpy166II GTNNAC 3 cut(s) 295, 1027, 1116
Hpy188I TCNGA 7 cut(s) 629, 717, 821, 1078, 1174, 1366, 1498
Hpy188III TCNNGA 7 cut(s) 808, 854, 1085, 1439, 1474, 1508, 1520
Hpy8I GTNNAC 3 cut(s) 295, 1027, 1116
Hpy99I CGWCG 1 cut(s) 1226
HpyAV CCTTC 5 cut(s) 302, 851, 1179, 1202, 1388
HpyCH4III ACNGT 1 cut(s) 1024
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 5 cut(s) 455, 828, 1016, 1388, 1484
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 500, 1385
HpyF3I CTNAG 6 cut(s) 473, 1002, 1075, 1173, 1352, 1495
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 2 cut(s) 267, 1221
Hsp92II CATG 8 cut(s) 597, 620, 934, 1056, 1162, 1268, 1409, 1511
HspAI GCGC 2 cut(s) 267, 329
KasI GGCGCC 1 cut(s) 266
Kpn2I TCCGGA 1 cut(s) 807
Ksp22I TGATCA 2 cut(s) 190, 744
LmnI GCTCC 5 cut(s) 286, 364, 482, 629, 1296
Lsp1109I GCAGC 3 cut(s) 127, 602, 1028
LweI GCATC 1 cut(s) 647
MaeI CTAG 4 cut(s) 93, 587, 1230, 1428
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 5 cut(s) 619, 700, 734, 801, 1142
MfeI CAATTG 1 cut(s) 1380
MflI RGATCY 3 cut(s) 1078, 1435, 1491
MhlI GDGCHC 1 cut(s) 1402
MluCI AATT 7 cut(s) 199, 510, 658, 916, 1033, 1237, 1380
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 3 cut(s) 17, 539, 1203
MroI TCCGGA 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 815
MseI TTAA 7 cut(s) 369, 509, 923, 1314, 1322, 1449, 1534
MslI CAYNNNNRTG 1 cut(s) 890
MspCI CTTAAG 1 cut(s) 922
MspI CCGG 2 cut(s) 808, 843
MspR9I CCNGG 2 cut(s) 789, 844
MunI CAATTG 1 cut(s) 1380
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 1 cut(s) 789
MwoI GCNNNNNNNGC 3 cut(s) 273, 500, 1385
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 1 cut(s) 844
NheI GCTAGC 1 cut(s) 586
NlaIII CATG 8 cut(s) 597, 620, 934, 1056, 1162, 1268, 1409, 1511
NlaIV GGNNCC 4 cut(s) 16, 268, 571, 1045
NmuCI GTSAC 1 cut(s) 700
NsbI TGCGCA 1 cut(s) 330
NspI RCATGY 2 cut(s) 1056, 1162
PagI TCATGA 1 cut(s) 1507
PceI AGGCCT 1 cut(s) 1234
PciI ACATGT 1 cut(s) 1052
PctI GAATGC 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 815
PfeI GAWTC 2 cut(s) 96, 832
PflMI CCANNNNNTGG 1 cut(s) 1139
PkrI GCNGC 4 cut(s) 142, 592, 1018, 1262
PleI GAGTC 3 cut(s) 16, 539, 1202
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 3 cut(s) 16, 539, 1202
PscI ACATGT 1 cut(s) 1052
Psp6I CCWGG 1 cut(s) 787
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 4 cut(s) 16, 268, 571, 1045
PstNI CAGNNNCTG 2 cut(s) 11, 1022
PsuI RGATCY 3 cut(s) 1078, 1435, 1491
RsaI GTAC 1 cut(s) 1117
RsaNI GTAC 1 cut(s) 1116
RseI CAYNNNNRTG 1 cut(s) 890
SaqAI TTAA 7 cut(s) 369, 509, 923, 1314, 1322, 1449, 1534
SatI GCNGC 4 cut(s) 141, 591, 1017, 1261
SchI GAGTC 3 cut(s) 17, 539, 1203
ScrFI CCNGG 2 cut(s) 789, 844
SduI GDGCHC 1 cut(s) 1402
SfaNI GCATC 1 cut(s) 647
SfoI GGCGCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 890
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
SpeI ACTAGT 1 cut(s) 1427
Sse9I AATT 7 cut(s) 199, 510, 658, 916, 1033, 1237, 1380
SseBI AGGCCT 1 cut(s) 1234
SsiI CCGC 5 cut(s) 777, 873, 1047, 1166, 1260
SspDI GGCGCC 1 cut(s) 266
SspI AATATT 3 cut(s) 670, 1360, 1502
SspMI CTAG 4 cut(s) 93, 587, 1230, 1428
StuI AGGCCT 1 cut(s) 1234
StyD4I CCNGG 2 cut(s) 787, 842
StyI CCWWGG 5 cut(s) 489, 1090, 1186, 1229, 1331
TaaI ACNGT 1 cut(s) 1024
TaiI ACGT 1 cut(s) 257
TaqI TCGA 5 cut(s) 390, 768, 1059, 1192, 1224
TasI AATT 7 cut(s) 199, 510, 658, 916, 1033, 1237, 1380
TatI WGTACW 1 cut(s) 1115
TauI GCSGC 1 cut(s) 1263
TfiI GAWTC 2 cut(s) 96, 832
Tru1I TTAA 7 cut(s) 369, 509, 923, 1314, 1322, 1449, 1534
Tru9I TTAA 7 cut(s) 369, 509, 923, 1314, 1322, 1449, 1534
TscAI CASTG 5 cut(s) 114, 304, 343, 951, 1045
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 3 cut(s) 140, 590, 1016
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 4 cut(s) 44, 321, 376, 1164
TspGWI ACGGA 2 cut(s) 557, 669
TspRI CASTG 5 cut(s) 114, 304, 343, 951, 1045
Van91I CCANNNNNTGG 1 cut(s) 1139
Vha464I CTTAAG 1 cut(s) 922
XapI RAATTY 1 cut(s) 916
XceI RCATGY 2 cut(s) 1056, 1162
XcmI CCANNNNNNNNNTGG 2 cut(s) 27, 487
XmaJI CCTAGG 1 cut(s) 1229
XmiI GTMKAC 2 cut(s) 294, 1026
XmnI GAANNNNTTC 1 cut(s) 815
XspI CTAG 4 cut(s) 93, 587, 1230, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.