Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Forward (+)

29222277 .. 29224210

Gene Structure 1934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCGGTCGCTTGCACACAACCTACCACCCGATTCACTACCTCTTCACCCGGATCCGATCCACACCGACCTCCTGCTACAATCGGCCTTGGCTTATGAGACACCAAACAATCTCGCCGCTTGGGCTCTTGGGCTCGACGCCGCATGTACAGAGATGATAATGCAAACAGATGGTAACAATGCGGAGAGCATGTTTCCACCTTCTGAGTGGCAATACAAAGATCAAGTCTCTTATTGCGAAGAGACTTACGGCGTTGAGCCTAGGCCTAATTGGATCACCACGGAGTTTGGCGGCCATGATATCAAGAGGGTTTTGAGAAGATTTGGGAGCAACATCATCTTCTTTAATGGCTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTGAACAATATTTCCAAGAGGATAGTAGCAATTGTTGCAAAAGAAGGTGCTCACCATGTTGACTTGAGGTTCAAAACCAGTGAAGATCCAGAATGGCTTAACGATGTGAGGAAGCAAGAGATCAAGATCATTGCGAAGTGGATCTCAGAATATTATCATGACCTTGCTGATAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

186

Amino Acids

21.2

Weight (kDa)

5.43

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	48 - 165	3.1e-11	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	4, 117, 141, 182, 291
AclWI	GGATC	6 cut(s)	47, 52, 60, 281, 461, 530
AcoI	YGGCCR	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	454
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	4 cut(s)	92, 232, 236, 351
AlwI	GGATC	6 cut(s)	47, 52, 60, 281, 461, 530
AoxI	GGCC	3 cut(s)	84, 263, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AspA2I	CCTAGG	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	3 cut(s)	38, 268, 425
AvrII	CCTAGG	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	127, 135
Bbv12I	GWGCWC	1 cut(s)	433
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	4 cut(s)	92, 232, 236, 351
BfaI	CTAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	352
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	117, 141, 292
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	3 cut(s)	118, 142, 293
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	4 cut(s)	87, 260, 279, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	510
Bse8I	GATNNNNATC	1 cut(s)	506
BseDI	CCNNGG	4 cut(s)	87, 260, 279, 362
BseJI	GATNNNNATC	1 cut(s)	506
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	2 cut(s)	195, 540
BseNI	ACTGG	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	86, 265, 294
BsiEI	CGRYCG	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	4 cut(s)	92, 232, 236, 351
BsnI	GGCC	3 cut(s)	86, 265, 294
Bso31I	GGTCTC	1 cut(s)	351
Bsp1286I	GDGCHC	3 cut(s)	127, 135, 433
Bsp1407I	TGTACA	1 cut(s)	146
Bsp143I	GATC	8 cut(s)	52, 57, 220, 273, 466, 501, 507, 522
BspACI	CCGC	5 cut(s)	4, 117, 141, 182, 291
BspANI	GGCC	3 cut(s)	86, 265, 294
BspCNI	CTCAG	2 cut(s)	196, 539
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	6 cut(s)	47, 52, 60, 281, 461, 530
BspTI	CTTAAG	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	510
BsrGI	TGTACA	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	4 cut(s)	87, 260, 279, 362
BssMI	GATC	8 cut(s)	52, 57, 220, 273, 466, 501, 507, 522
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	87, 260, 362
Bst6I	CTCTTC	2 cut(s)	48, 234
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	204, 526
BstDSI	CCRYGG	1 cut(s)	279
BstKTI	GATC	8 cut(s)	55, 60, 223, 276, 469, 504, 510, 525
BstMAI	GTCTC	4 cut(s)	92, 232, 236, 351
BstMBI	GATC	8 cut(s)	52, 57, 220, 273, 466, 501, 507, 522
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 416
BstNSI	RCATGY	2 cut(s)	147, 193
BstSCI	CCNGG	1 cut(s)	48
BstX2I	RGATCY	3 cut(s)	52, 466, 522
BstYI	RGATCY	3 cut(s)	52, 466, 522
BsuRI	GGCC	3 cut(s)	86, 265, 294
BtgI	CCRYGG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	538
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	147
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	5 cut(s)	144, 190, 296, 437, 539
CviJI	RGCY	9 cut(s)	86, 92, 125, 133, 259, 265, 294, 351, 478
CviKI_1	RGCY	9 cut(s)	86, 92, 125, 133, 259, 265, 294, 351, 478
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	2 cut(s)	204, 526
DpnI	GATC	8 cut(s)	54, 59, 222, 275, 468, 503, 509, 524
DpnII	GATC	8 cut(s)	52, 57, 220, 273, 466, 501, 507, 522
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	48, 234
EarI	CTCTTC	2 cut(s)	48, 234
Eco130I	CCWWGG	3 cut(s)	87, 260, 362
Eco147I	AGGCCT	1 cut(s)	265
Eco24I	GRGCYC	2 cut(s)	127, 135
Eco31I	GGTCTC	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	3 cut(s)	87, 260, 362
EcoT38I	GRGCYC	2 cut(s)	127, 135
ErhI	CCWWGG	3 cut(s)	87, 260, 362
FaeI	CATG	5 cut(s)	147, 193, 299, 440, 542
FaiI	YATR	6 cut(s)	96, 145, 191, 297, 438, 540
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FatI	CATG	5 cut(s)	143, 189, 295, 436, 538
Fnu4HI	GCNGC	3 cut(s)	117, 141, 292
FriOI	GRGCYC	2 cut(s)	127, 135
Fsp4HI	GCNGC	3 cut(s)	117, 141, 292
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	3 cut(s)	117, 141, 292
HaeIII	GGCC	3 cut(s)	86, 265, 294
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	147, 193, 299, 440, 542
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	3 cut(s)	38, 268, 425
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	57, 205, 529
Hpy188III	TCNNGA	4 cut(s)	304, 470, 505, 539
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	210, 419
HpyCH4V	TGCA	3 cut(s)	14, 163, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 416
HpyF3I	CTNAG	2 cut(s)	204, 526
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	147, 193, 299, 440, 542
Kzo9I	GATC	8 cut(s)	52, 57, 220, 273, 466, 501, 507, 522
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	4 cut(s)	63, 86, 472, 483
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	8 cut(s)	54, 59, 222, 275, 468, 503, 509, 524
MboI	GATC	8 cut(s)	52, 57, 220, 273, 466, 501, 507, 522
MboII	GAAGA	5 cut(s)	35, 251, 330, 331, 476
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	3 cut(s)	52, 466, 522
MhlI	GDGCHC	3 cut(s)	127, 135, 433
MluCI	AATT	2 cut(s)	268, 411
MnlI	CCTC	7 cut(s)	51, 80, 300, 368, 393, 441, 483
MseI	TTAA	3 cut(s)	345, 353, 480
MspCI	CTTAAG	1 cut(s)	352
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	122, 416
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	8 cut(s)	52, 57, 220, 273, 466, 501, 507, 522
NlaIII	CATG	5 cut(s)	147, 193, 299, 440, 542
NlaIV	GGNNCC	1 cut(s)	54
NspI	RCATGY	2 cut(s)	147, 193
PagI	TCATGA	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	118, 142, 293
PspN4I	GGNNCC	1 cut(s)	54
PsuI	RGATCY	3 cut(s)	52, 466, 522
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	345, 353, 480
SatI	GCNGC	3 cut(s)	117, 141, 292
Sau3AI	GATC	8 cut(s)	52, 57, 220, 273, 466, 501, 507, 522
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	3 cut(s)	127, 135, 433
SetI	ASST	7 cut(s)	24, 43, 72, 202, 430, 452, 546
SmlI	CTYRAG	2 cut(s)	352, 445
SmoI	CTYRAG	2 cut(s)	352, 445
Sse9I	AATT	2 cut(s)	268, 411
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	5 cut(s)	4, 117, 141, 182, 291
SspI	AATATT	2 cut(s)	391, 533
SspMI	CTAG	1 cut(s)	261
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	3 cut(s)	87, 260, 362
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	268, 411
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	3 cut(s)	119, 143, 294
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	345, 353, 480
Tru9I	TTAA	3 cut(s)	345, 353, 480
TscAI	CASTG	1 cut(s)	466
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	352
XceI	RCATGY	2 cut(s)	147, 193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.