Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Reverse (-)

13096987 .. 13099918

Gene Structure 2932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGACTGATTATCCTACTCCCTCAAATTTCATGACTCCTGTGCCAGCATATCCAGTTAAACAGATGTGTAAGGCAATAGATAATCCAGCAACAGGAAATGATACATTTGCAAAGTTATATGGTGCAGTTACCGTCTACTATAATTACAGTGGCACAACTACGTGTTTCGATCCTGATGATAACTCAGATCCTCACGACCTCGGAGGATGGGATTGGCAGGCATGTACAGAGATGATAATGCAAACAAATGGCAACGATAAGGAGAGCATATTCCCACCTTCTGAGTCGCAATACAAAGATCAAGTCTCTTATTGCAAAGAGGCTTATGGCGTTGAACCTAGGCCTAATTGGATCACCACTGAGTTTGGGGGCCATGACATCAAGAGAGTTTTAAGGAGATATGGGAGCAACATTATCTTCTTTAATGGGTTAAGAGACCCTTGGAGTGGTGGAGGGGTGTTGAGCAACATTTCCAAGAGGATAGTAGCAATTGTTGCAAAAGAAGGTGCTCACCATGTTGACTTGAGGTTCAAAACTAATGAAGATCCAGAATGGCTTAAAGATGTCAGGAAGCAAGAGGTCAAGATCATTGCAAAGTGGATCTCAGAATATTATCATGACCTTGCTGATAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

213

Amino Acids

24.16

Weight (kDa)

5.5

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	1 - 191	2.6e-19	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AclWI	GGATC	5 cut(s)	164, 182, 359, 539, 608
AcsI	RAATTY	1 cut(s)	25
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	2 cut(s)	92, 446
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	335, 532
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	310, 429
AlwI	GGATC	5 cut(s)	164, 182, 359, 539, 608
AoxI	GGCC	2 cut(s)	341, 370
ApoI	RAATTY	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
AspA2I	CCTAGG	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	346, 503
AvrII	CCTAGG	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	511
BccI	CCATC	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	310, 429
BfaI	CTAG	1 cut(s)	339
BlnI	CCTAGG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	199, 338, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 446
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	588
BseDI	CCNNGG	3 cut(s)	199, 338, 440
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	92, 446
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	4 cut(s)	198, 273, 351, 618
BseNI	ACTGG	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	343, 372
BsiHKAI	GWGCWC	1 cut(s)	511
BslI	CCNNNNNNNGG	2 cut(s)	92, 446
BsmAI	GTCTC	2 cut(s)	310, 429
BsnI	GGCC	2 cut(s)	343, 372
Bso31I	GGTCTC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	224
Bsp143I	GATC	7 cut(s)	169, 187, 298, 351, 544, 585, 600
BspANI	GGCC	2 cut(s)	343, 372
BspCNI	CTCAG	4 cut(s)	197, 274, 352, 617
BspHI	TCATGA	2 cut(s)	30, 616
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	5 cut(s)	164, 182, 359, 539, 608
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	588
BsrGI	TGTACA	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	199, 338, 440
BssMI	GATC	7 cut(s)	169, 187, 298, 351, 544, 585, 600
BssT1I	CCWWGG	2 cut(s)	338, 440
Bst4CI	ACNGT	2 cut(s)	133, 149
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	45, 219
BstDEI	CTNAG	4 cut(s)	184, 282, 360, 604
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	7 cut(s)	172, 190, 301, 354, 547, 588, 603
BstMAI	GTCTC	2 cut(s)	310, 429
BstMBI	GATC	7 cut(s)	169, 187, 298, 351, 544, 585, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	225
BstX2I	RGATCY	3 cut(s)	187, 544, 600
BstYI	RGATCY	3 cut(s)	187, 544, 600
BsuRI	GGCC	2 cut(s)	343, 372
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	154, 357
Cac8I	GCNNGC	2 cut(s)	45, 219
CciI	TCATGA	2 cut(s)	30, 616
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	225
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	5 cut(s)	31, 222, 374, 515, 617
CviJI	RGCY	4 cut(s)	323, 343, 372, 556
CviKI_1	RGCY	4 cut(s)	323, 343, 372, 556
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	4 cut(s)	184, 282, 360, 604
DpnI	GATC	7 cut(s)	171, 189, 300, 353, 546, 587, 602
DpnII	GATC	7 cut(s)	169, 187, 298, 351, 544, 585, 600
Eco130I	CCWWGG	2 cut(s)	338, 440
Eco147I	AGGCCT	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	338, 440
ErhI	CCWWGG	2 cut(s)	338, 440
FaeI	CATG	5 cut(s)	34, 225, 377, 518, 620
FalI	AAGNNNNNCTT	2 cut(s)	424, 456
FatI	CATG	5 cut(s)	30, 221, 373, 514, 616
FblI	GTMKAC	1 cut(s)	135
FokI	GGATG	1 cut(s)	219
FspBI	CTAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	343, 372
Hin1II	CATG	5 cut(s)	34, 225, 377, 518, 620
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	2 cut(s)	34, 284
HphI	GGTGA	2 cut(s)	346, 503
Hpy166II	GTNNAC	2 cut(s)	136, 520
Hpy188I	TCNGA	4 cut(s)	187, 203, 283, 607
Hpy188III	TCNNGA	8 cut(s)	31, 173, 194, 382, 548, 568, 583, 617
Hpy8I	GTNNAC	2 cut(s)	136, 520
HpyAV	CCTTC	2 cut(s)	288, 497
HpyCH4III	ACNGT	2 cut(s)	133, 149
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	6 cut(s)	110, 125, 241, 315, 497, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	4 cut(s)	184, 282, 360, 604
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	5 cut(s)	34, 225, 377, 518, 620
Kzo9I	GATC	7 cut(s)	169, 187, 298, 351, 544, 585, 600
LmnI	GCTCC	1 cut(s)	405
LpnPI	CCDG	9 cut(s)	51, 57, 66, 78, 99, 186, 203, 553, 561
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	7 cut(s)	171, 189, 300, 353, 546, 587, 602
MboI	GATC	7 cut(s)	169, 187, 298, 351, 544, 585, 600
MboII	GAAGA	2 cut(s)	409, 554
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	3 cut(s)	187, 544, 600
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	4 cut(s)	25, 142, 346, 489
MlyI	GAGTC	2 cut(s)	28, 293
MnlI	CCTC	9 cut(s)	31, 197, 201, 209, 313, 446, 471, 519, 571
MseI	TTAA	5 cut(s)	57, 392, 423, 431, 558
MunI	CAATTG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	494
NdeII	GATC	7 cut(s)	169, 187, 298, 351, 544, 585, 600
NlaIII	CATG	5 cut(s)	34, 225, 377, 518, 620
NlaIV	GGNNCC	1 cut(s)	371
NspI	RCATGY	1 cut(s)	225
PagI	TCATGA	2 cut(s)	30, 616
PceI	AGGCCT	1 cut(s)	343
PleI	GAGTC	2 cut(s)	28, 292
PpsI	GAGTC	2 cut(s)	28, 292
Ppu21I	YACGTR	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	370
PsuI	RGATCY	3 cut(s)	187, 544, 600
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	57, 392, 423, 431, 558
Sau3AI	GATC	7 cut(s)	169, 187, 298, 351, 544, 585, 600
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	2 cut(s)	28, 293
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	8 cut(s)	164, 201, 280, 340, 508, 530, 582, 624
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	4 cut(s)	25, 142, 346, 489
SseBI	AGGCCT	1 cut(s)	343
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	338, 440
TaaI	ACNGT	2 cut(s)	133, 149
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	25, 142, 346, 489
TatI	WGTACW	1 cut(s)	224
Tru1I	TTAA	5 cut(s)	57, 392, 423, 431, 558
Tru9I	TTAA	5 cut(s)	57, 392, 423, 431, 558
TscAI	CASTG	2 cut(s)	154, 364
TspDTI	ATGAA	2 cut(s)	19, 555
TspRI	CASTG	2 cut(s)	154, 364
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	225
XmaJI	CCTAGG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.