Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Forward (+)

64536551 .. 64537417

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAATCTTTTCAACGAGAGGTATTTGATAAATGATACGTTACGGGGAGGCGCCAAGAGCAATGCTCCAATCTTTGTCTACACCGGTAATGAAGGGAACATAGAATGGTTTGCGCAAACACCGGTTTTACGTATGAGACAAGCGCCCCGTTCAAAGCCCTCATCATTCTCATTGAGCATATATAGGTTCTATGGAAAGTCTATACCTTTTGGGGGCAAGAAAGATGTGGCTTATAGCAATTCAACTACACTTGGATATCTAAGCTCCACACAAGCCTTGGCAGATTATGCTTCCTTAATTATTGATGCGAAGAATAATTTGACAGCAATCGACTCACCGGTAGTGGTCTTTGGAGGTTCCTATGGAGGAATGCTGGCAGCATGGTTTAGGTTGAAGTATCCCCATGTTACAATTGGAGCTTTGGCATCATCTTCCCCAATCCTCAATTTTGAGAATATAACATCTCCTTATAGCTTCAACGATATAGTCACTAAAGACTTTCGGAGTGAGAGTGAAAGTTGTTACAAAGTGATCAAAGGCTCGTGGCAACAGATCGAAGACACTGCAAACCAACATGGAGGGCTTGAGCTACTCCGGAAATCGTTTAAATTATGCAAGAATTATATTAGCGCAGATGATCTTGAAGGTTGGCTTAGAACCGCTTATATTTACACGGTCAGTAAGTTAATATCCGAGAATGGTCCGGAAGCCGGCATTGCATTCCCCACGGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACGGGGGACAAGACGGTGCTTCGGTATGATGATGTGATGAAATTAGATTTTGGAACTCATGTTGATGGTCATATAGTTGACTCGCATTTACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

288

Amino Acids

31.98

Weight (kDa)

7.69

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	3 - 217	2.8e-42	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	78
AccIII	TCCGGA	2 cut(s)	594, 703
AciI	CCGC	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	4 cut(s)	212, 710, 772, 773
AgeI	ACCGGT	3 cut(s)	83, 121, 337
AgsI	TTSAA	7 cut(s)	13, 153, 243, 394, 478, 644, 742
AluBI	AGCT	4 cut(s)	264, 419, 474, 589
AluI	AGCT	4 cut(s)	264, 419, 474, 589
Alw26I	GTCTC	1 cut(s)	130
Aor13HI	TCCGGA	2 cut(s)	594, 703
ApeKI	GCWGC	2 cut(s)	377, 752
AsiGI	ACCGGT	3 cut(s)	83, 121, 337
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	4 cut(s)	53, 115, 145, 632
AspS9I	GGNCC	2 cut(s)	701, 762
AsuHPI	GGTGA	1 cut(s)	327
AvaII	GGWCC	2 cut(s)	701, 762
BanI	GGYRCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	389, 739
BccI	CCATC	1 cut(s)	830
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	130
BfoI	RGCGCY	2 cut(s)	54, 146
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	378, 753
BlsI	GCNGC	2 cut(s)	379, 754
Bme18I	GGWCC	2 cut(s)	701, 762
BmgT120I	GGNCC	2 cut(s)	701, 762
BmiI	GGNNCC	3 cut(s)	52, 358, 764
BmsI	GCATC	3 cut(s)	295, 434, 722
BpiI	GAAGAC	1 cut(s)	564
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpuEI	CTTGAG	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	276, 726
BsaWI	WCCGGW	5 cut(s)	83, 121, 337, 594, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 710, 772, 773
Bse118I	RCCGGY	4 cut(s)	83, 121, 337, 710
Bse3DI	GCAATG	2 cut(s)	67, 714
BseAI	TCCGGA	2 cut(s)	594, 703
BseDI	CCNNGG	2 cut(s)	276, 726
BseGI	GGATG	1 cut(s)	737
BseLI	CCNNNNNNNGG	4 cut(s)	212, 710, 772, 773
BseMI	GCAATG	2 cut(s)	67, 714
BseXI	GCAGC	2 cut(s)	389, 739
BshNI	GGYRCC	1 cut(s)	50
BshTI	ACCGGT	3 cut(s)	83, 121, 337
BsiSI	CCGG	6 cut(s)	84, 122, 338, 595, 704, 711
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	4 cut(s)	212, 710, 772, 773
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	2 cut(s)	375, 719
Bsp13I	TCCGGA	2 cut(s)	594, 703
Bsp143I	GATC	3 cut(s)	531, 552, 637
BspACI	CCGC	1 cut(s)	660
BspEI	TCCGGA	2 cut(s)	594, 703
BspLI	GGNNCC	3 cut(s)	52, 358, 764
BspT107I	GGYRCC	1 cut(s)	50
BsrDI	GCAATG	2 cut(s)	67, 714
BsrFI	RCCGGY	4 cut(s)	83, 121, 337, 710
BssAI	RCCGGY	4 cut(s)	83, 121, 337, 710
BssECI	CCNNGG	2 cut(s)	276, 726
BssMI	GATC	3 cut(s)	531, 552, 637
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	541
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	541
Bst4CI	ACNGT	3 cut(s)	676, 787, 864
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	375, 712
BstDEI	CTNAG	2 cut(s)	260, 653
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	737
BstH2I	RGCGCY	2 cut(s)	54, 146
BstHHI	GCGC	4 cut(s)	53, 115, 145, 632
BstKTI	GATC	3 cut(s)	534, 555, 640
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	531, 552, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 287, 716
BstSNI	TACGTA	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	389, 739
BstV2I	GAAGAC	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	737
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	2 cut(s)	375, 712
CfoI	GCGC	4 cut(s)	53, 115, 145, 632
Cfr10I	RCCGGY	4 cut(s)	83, 121, 337, 710
Cfr13I	GGNCC	2 cut(s)	701, 762
CspAI	ACCGGT	3 cut(s)	83, 121, 337
CviAII	CATG	4 cut(s)	381, 404, 575, 830
DdeI	CTNAG	2 cut(s)	260, 653
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	3 cut(s)	533, 554, 639
DpnII	GATC	3 cut(s)	531, 552, 637
DraI	TTTAAA	1 cut(s)	607
Eco105I	TACGTA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	701, 762
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	276
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	4 cut(s)	384, 407, 578, 833
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	4 cut(s)	380, 403, 574, 829
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	378, 753
FokI	GGATG	1 cut(s)	744
Fsp4HI	GCNGC	2 cut(s)	378, 753
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	4 cut(s)	52, 114, 144, 631
GluI	GCNGC	2 cut(s)	378, 753
HaeII	RGCGCY	2 cut(s)	54, 146
HapII	CCGG	6 cut(s)	84, 122, 338, 595, 704, 711
HhaI	GCGC	4 cut(s)	53, 115, 145, 632
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	384, 407, 578, 833
Hin6I	GCGC	4 cut(s)	51, 113, 143, 630
HinP1I	GCGC	4 cut(s)	51, 113, 143, 630
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	3 cut(s)	4, 332, 851
HpaII	CCGG	6 cut(s)	84, 122, 338, 595, 704, 711
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	2 cut(s)	79, 850
Hpy188I	TCNGA	2 cut(s)	504, 694
Hpy188III	TCNNGA	3 cut(s)	595, 641, 704
Hpy8I	GTNNAC	2 cut(s)	79, 850
HpyAV	CCTTC	2 cut(s)	86, 638
HpyCH4III	ACNGT	3 cut(s)	676, 787, 864
HpyCH4IV	ACGT	2 cut(s)	38, 130
HpyCH4V	TGCA	3 cut(s)	566, 615, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 287, 716
HpyF3I	CTNAG	2 cut(s)	260, 653
HpySE526I	ACGT	2 cut(s)	38, 130
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	384, 407, 578, 833
HspAI	GCGC	4 cut(s)	51, 113, 143, 630
KasI	GGCGCC	1 cut(s)	50
Kpn2I	TCCGGA	2 cut(s)	594, 703
KroI	GCCGGC	1 cut(s)	710
KroNI	GCCGGC	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	3 cut(s)	531, 552, 637
LmnI	GCTCC	3 cut(s)	70, 269, 416
LpnPI	CCDG	7 cut(s)	97, 135, 351, 359, 608, 717, 724
Lsp1109I	GCAGC	2 cut(s)	389, 739
LweI	GCATC	3 cut(s)	295, 434, 722
MaeII	ACGT	2 cut(s)	38, 130
MaeIII	GTNAC	4 cut(s)	39, 406, 487, 521
MalI	GATC	3 cut(s)	533, 554, 639
MboI	GATC	3 cut(s)	531, 552, 637
MboII	GAAGA	3 cut(s)	322, 423, 569
MfeI	CAATTG	1 cut(s)	411
MluCI	AATT	9 cut(s)	238, 297, 316, 411, 445, 608, 619, 742, 812
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	2 cut(s)	326, 845
MnlI	CCTC	7 cut(s)	12, 41, 169, 347, 359, 452, 572
MroI	TCCGGA	2 cut(s)	594, 703
MroNI	GCCGGC	1 cut(s)	710
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	296, 606, 686
MslI	CAYNNNNRTG	1 cut(s)	834
MspI	CCGG	6 cut(s)	84, 122, 338, 595, 704, 711
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	2 cut(s)	375, 719
MwoI	GCNNNNNNNGC	3 cut(s)	57, 287, 716
NaeI	GCCGGC	1 cut(s)	712
NarI	GGCGCC	1 cut(s)	51
NdeII	GATC	3 cut(s)	531, 552, 637
NgoMIV	GCCGGC	1 cut(s)	710
NlaIII	CATG	4 cut(s)	384, 407, 578, 833
NlaIV	GGNNCC	3 cut(s)	52, 358, 764
NmuCI	GTSAC	1 cut(s)	487
NsbI	TGCGCA	1 cut(s)	114
PctI	GAATGC	2 cut(s)	375, 719
PdiI	GCCGGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	4
PinAI	ACCGGT	3 cut(s)	83, 121, 337
PkrI	GCNGC	2 cut(s)	379, 754
PleI	GAGTC	2 cut(s)	326, 845
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	2 cut(s)	326, 845
Ppu21I	YACGTR	1 cut(s)	131
PspN4I	GGNNCC	3 cut(s)	52, 358, 764
PspPI	GGNCC	2 cut(s)	701, 762
RseI	CAYNNNNRTG	1 cut(s)	834
SaqAI	TTAA	3 cut(s)	296, 606, 686
SatI	GCNGC	2 cut(s)	378, 753
Sau3AI	GATC	3 cut(s)	531, 552, 637
Sau96I	GGNCC	2 cut(s)	701, 762
SchI	GAGTC	2 cut(s)	326, 845
SfaNI	GCATC	3 cut(s)	295, 434, 722
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	2 cut(s)	701, 762
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SnaBI	TACGTA	1 cut(s)	131
Sse9I	AATT	9 cut(s)	238, 297, 316, 411, 445, 608, 619, 742, 812
SsiI	CCGC	1 cut(s)	660
SspDI	GGCGCC	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	676, 787, 864
TaiI	ACGT	2 cut(s)	41, 133
TaqI	TCGA	2 cut(s)	330, 555
TasI	AATT	9 cut(s)	238, 297, 316, 411, 445, 608, 619, 742, 812
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	296, 606, 686
Tru9I	TTAA	3 cut(s)	296, 606, 686
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	2 cut(s)	377, 752
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	3 cut(s)	17, 105, 824
TspRI	CASTG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	701, 762
XcmI	CCANNNNNNNNNTGG	2 cut(s)	274, 410
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.