Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Reverse (-)

20755731 .. 20758128

Gene Structure 2398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGTGTACGGAGATGATAATGCAAACAGATGGTAACAATGAGGAGAGCATGTTCCCACCTTCTGAGTGGCAATACAAAGATCAAGTCTCTTATTGCGAAGAGACTTACGGCGTTGAGCCTAGGCCTACTTGGATCACCACGGAGTTTGGCGGCCATGATATCAAGAGGGTTTTGAGAAGATTTGGGAGCAACATCATCTTCTTTAATGGCTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTGACCAATATTTCCAAGAGGATAGTAGCAATTGTTGCAAAAGAAGGTGCTCACCATGTTGACTTGAGGTTCAAAACTAGTGAAGATCCAGAATGGCTTAACGATGTGAGGAAGCAAGAGATCAAGATCATTGCAAAGTGGATCTCAGAATATTATCATGACCTTGCTGATAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

140

Amino Acids

16.29

Weight (kDa)

5.52

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	2 - 119	6.8e-12	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	3 cut(s)	143, 323, 392
AcoI	YGGCCR	1 cut(s)	154
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflII	CTTAAG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	316
AhlI	ACTAGT	1 cut(s)	320
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	3 cut(s)	94, 98, 213
AlwI	GGATC	3 cut(s)	143, 323, 392
AoxI	GGCC	2 cut(s)	125, 154
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspA2I	CCTAGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	130, 287
AvrII	CCTAGG	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	295
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	127
BcoDI	GTCTC	3 cut(s)	94, 98, 213
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	123, 321
BfrI	CTTAAG	1 cut(s)	214
BisI	GCNGC	1 cut(s)	154
BlnI	CCTAGG	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	328
BsaBI	GATNNNNATC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	122, 141, 224
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	122, 141, 224
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	57, 402
BseRI	GAGGAG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	127, 156
BsiHKAI	GWGCWC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	3 cut(s)	94, 98, 213
BsnI	GGCC	2 cut(s)	127, 156
Bso31I	GGTCTC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	6 cut(s)	82, 135, 328, 363, 369, 384
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	127, 156
BspCNI	CTCAG	2 cut(s)	58, 401
BspHI	TCATGA	1 cut(s)	400
BspPI	GGATC	3 cut(s)	143, 323, 392
BspTI	CTTAAG	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	122, 141, 224
BssMI	GATC	6 cut(s)	82, 135, 328, 363, 369, 384
BssT1I	CCWWGG	2 cut(s)	122, 224
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	66, 388
BstDSI	CCRYGG	1 cut(s)	141
BstKTI	GATC	6 cut(s)	85, 138, 331, 366, 372, 387
BstMAI	GTCTC	3 cut(s)	94, 98, 213
BstMBI	GATC	6 cut(s)	82, 135, 328, 363, 369, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	55
BstX2I	RGATCY	2 cut(s)	328, 384
BstYI	RGATCY	2 cut(s)	328, 384
BsuRI	GGCC	2 cut(s)	127, 156
BtgI	CCRYGG	1 cut(s)	141
CciI	TCATGA	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	9
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	4 cut(s)	52, 158, 299, 401
CviJI	RGCY	5 cut(s)	121, 127, 156, 213, 340
CviKI_1	RGCY	5 cut(s)	121, 127, 156, 213, 340
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	66, 388
DpnI	GATC	6 cut(s)	84, 137, 330, 365, 371, 386
DpnII	GATC	6 cut(s)	82, 135, 328, 363, 369, 384
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	122, 224
Eco147I	AGGCCT	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	122, 224
ErhI	CCWWGG	2 cut(s)	122, 224
FaeI	CATG	4 cut(s)	55, 161, 302, 404
FaiI	YATR	4 cut(s)	53, 159, 300, 402
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	4 cut(s)	51, 157, 298, 400
Fnu4HI	GCNGC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	2 cut(s)	123, 321
GluI	GCNGC	1 cut(s)	154
HaeIII	GGCC	2 cut(s)	127, 156
Hin1II	CATG	4 cut(s)	55, 161, 302, 404
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HphI	GGTGA	2 cut(s)	130, 287
Hpy166II	GTNNAC	2 cut(s)	9, 304
Hpy188I	TCNGA	2 cut(s)	67, 391
Hpy188III	TCNNGA	4 cut(s)	166, 332, 367, 401
Hpy8I	GTNNAC	2 cut(s)	9, 304
HpyAV	CCTTC	2 cut(s)	72, 281
HpyCH4V	TGCA	3 cut(s)	25, 281, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	66, 388
Hsp92II	CATG	4 cut(s)	55, 161, 302, 404
Kzo9I	GATC	6 cut(s)	82, 135, 328, 363, 369, 384
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	1 cut(s)	345
MaeI	CTAG	2 cut(s)	123, 321
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	6 cut(s)	84, 137, 330, 365, 371, 386
MboI	GATC	6 cut(s)	82, 135, 328, 363, 369, 384
MboII	GAAGA	4 cut(s)	113, 192, 193, 338
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	2 cut(s)	328, 384
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	6 cut(s)	37, 162, 230, 255, 303, 345
MseI	TTAA	3 cut(s)	207, 215, 342
MspCI	CTTAAG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	6 cut(s)	82, 135, 328, 363, 369, 384
NlaIII	CATG	4 cut(s)	55, 161, 302, 404
NspI	RCATGY	1 cut(s)	55
PagI	TCATGA	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	328, 384
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	207, 215, 342
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	6 cut(s)	82, 135, 328, 363, 369, 384
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	4 cut(s)	64, 292, 314, 408
SmlI	CTYRAG	2 cut(s)	214, 307
SmoI	CTYRAG	2 cut(s)	214, 307
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	153
SspI	AATATT	2 cut(s)	253, 395
SspMI	CTAG	2 cut(s)	123, 321
StuI	AGGCCT	1 cut(s)	127
StyI	CCWWGG	2 cut(s)	122, 224
TasI	AATT	1 cut(s)	273
TauI	GCSGC	1 cut(s)	156
Tru1I	TTAA	3 cut(s)	207, 215, 342
Tru9I	TTAA	3 cut(s)	207, 215, 342
TspGWI	ACGGA	2 cut(s)	26, 158
Vha464I	CTTAAG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XmaJI	CCTAGG	1 cut(s)	122
XspI	CTAG	2 cut(s)	123, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.