Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Forward (+)

29208936 .. 29218368

Gene Structure 9433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAAAAGATGACAGAATCTAGGTCCCCATTTCTTTTCTGGTTCTCTTTCTTCTGTTTGCTTCATTCTCTTCCTGTCTACACTGCTAAATCCTCATATCGTAGATTCCCATCTTTACTGATATCCCCAGGAGAAAAGATATCACCTTCTGCTGGTCAAAACCAATTTTACAGAACCAAATACTTCACCCAAGTCCTTGATCATTTCAATTACTATCCCAAGAGCAATGAAACTTTCCAACAGAGGTATTTGATAAATGATACATTCTGGGGAGGCGCCAAGAGCAATGCTCCGATCTTTGTTTACACTGGTAATGAAGGGAACATAGAATGGTTTGCGGAGAACACTGGTTTTCTGTATGACACGGCTCCCCATTTTAAAGCCCTCATCATTTTCATTGAGCATAGGTTCTATGGAAAGTCTCTACCTTTTGGGGGCAGGAAAGATGTGGCTTATAGCAATGCAAGTACACTGGGATATCTAAGCTCCACAGAAGCCTTGGCAGATTATGCTACCTTAATTATTGATTTGAAGAAGAATTTGACAGCAACTGACTCACCTGTAGTGGTCTTTGGAGGTTCCTATGGAGGAATGCTGGCAGCATGGTTTAGGTTGAAATATCCCCATGTTACAATTGGAGCTTTGGCATCATCTTCTCCGATCCTCAATTTTGAGAACATAACATCTCCAGATAGCTTCAACAATATAGTCACTAAAGACTTCAGGAGTGAGAGTGAAAGTTGTTACAGAGTGATCAAGGGCTCATGGGAAAATATCAAAGACATCGCAAAGCAACCTGGAGGGCTTGAGCTTCTCCAGAAATCGTTTAAAATATGCACGAATAATATTACCTTAGATGATCTTCAAAATTGGCTTGAAGCCGCTTATCTTTACACAGCAATGACGGATTATCCTACTCCCTCGAATTTCATGAGTCCCATGCCAGCATATCCAGTGAAACAGATGTGTAAGGCAATAGATGATCCAACAACGGGAAATGATACATTTGCAAAGCTATATGGTGCAGCTACTGTCTACTATAATTACAGTGGGACGGCCAAGTGTTTCGATCTTAATGATAAATCAGATCCTCACGACCTCGGAGGATGGGATTGGCAGGTTTCCCATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

377

Amino Acids

42.64

Weight (kDa)

6.66

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	64 - 352	1.8e-65	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1108
AccB1I	GGYRCC	1 cut(s)	275
AccI	GTMKAC	2 cut(s)	78, 1035
AciI	CCGC	2 cut(s)	338, 882
AclWI	GGATC	3 cut(s)	655, 977, 1082
AcoI	YGGCCR	1 cut(s)	1056
AcsI	RAATTY	2 cut(s)	538, 925
AcuI	CTGAAG	1 cut(s)	706
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	3 cut(s)	152, 434, 992
AgsI	TTSAA	6 cut(s)	208, 532, 616, 700, 866, 878
AjnI	CCWGG	2 cut(s)	127, 796
AluBI	AGCT	6 cut(s)	486, 641, 696, 811, 1015, 1028
AluI	AGCT	6 cut(s)	486, 641, 696, 811, 1015, 1028
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	3 cut(s)	655, 977, 1082
AlwNI	CAGNNNCTG	2 cut(s)	551, 1031
AoxI	GGCC	1 cut(s)	1056
ApeKI	GCWGC	2 cut(s)	599, 1025
ApoI	RAATTY	2 cut(s)	538, 925
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	135, 178, 549
AvaII	GGWCC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	764
BbvI	GCAGC	2 cut(s)	611, 1037
BccI	CCATC	2 cut(s)	118, 1101
BceAI	ACGGC	2 cut(s)	381, 1071
BciT130I	CCWGG	2 cut(s)	129, 798
BclI	TGATCA	2 cut(s)	199, 753
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	1108
BisI	GCNGC	3 cut(s)	600, 882, 1026
BlsI	GCNGC	3 cut(s)	601, 883, 1027
Bme1390I	CCNGG	2 cut(s)	129, 798
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	4 cut(s)	26, 277, 369, 580
BmrFI	CCNGG	2 cut(s)	129, 798
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	3 cut(s)	672, 800, 819
BpuEI	CTTGAG	1 cut(s)	827
BsaBI	GATNNNNATC	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	127, 498, 1099
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 434, 992
Bse1I	ACTGG	4 cut(s)	313, 352, 477, 953
Bse3DI	GCAATG	4 cut(s)	232, 292, 466, 906
Bse8I	GATNNNNATC	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	129, 798
BseDI	CCNNGG	3 cut(s)	127, 498, 1099
BseGI	GGATG	1 cut(s)	1112
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	3 cut(s)	152, 434, 992
BseMI	GCAATG	4 cut(s)	232, 292, 466, 906
BseNI	ACTGG	4 cut(s)	313, 352, 477, 953
BseXI	GCAGC	2 cut(s)	611, 1037
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	1 cut(s)	1058
BshNI	GGYRCC	1 cut(s)	275
BslFI	GGGAC	3 cut(s)	10, 921, 1066
BslI	CCNNNNNNNGG	3 cut(s)	152, 434, 992
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	3 cut(s)	10, 921, 1066
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	1058
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	8 cut(s)	199, 294, 660, 753, 859, 982, 1069, 1087
BspACI	CCGC	2 cut(s)	338, 882
BspANI	GGCC	1 cut(s)	1058
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	4 cut(s)	26, 277, 369, 580
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	3 cut(s)	655, 977, 1082
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	4 cut(s)	232, 292, 466, 906
BsrI	ACTGG	4 cut(s)	313, 352, 477, 953
BssECI	CCNNGG	3 cut(s)	127, 498, 1099
BssMI	GATC	8 cut(s)	199, 294, 660, 753, 859, 982, 1069, 1087
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	129, 798
Bst4CI	ACNGT	2 cut(s)	1033, 1049
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	597, 945
BstDEI	CTNAG	2 cut(s)	482, 853
BstF5I	GGATG	1 cut(s)	1112
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	8 cut(s)	202, 297, 663, 756, 862, 985, 1072, 1090
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	8 cut(s)	199, 294, 660, 753, 859, 982, 1069, 1087
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 509
BstNI	CCWGG	2 cut(s)	129, 798
BstSCI	CCNGG	2 cut(s)	127, 796
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	2 cut(s)	611, 1037
BstX2I	RGATCY	1 cut(s)	1087
BstYI	RGATCY	1 cut(s)	1087
BsuRI	GGCC	1 cut(s)	1058
BtgZI	GCGATG	1 cut(s)	769
BtsCI	GGATG	1 cut(s)	1112
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	6 cut(s)	81, 306, 345, 470, 960, 1054
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	2 cut(s)	597, 945
CaiI	CAGNNNCTG	2 cut(s)	551, 1031
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	5 cut(s)	603, 626, 765, 931, 940
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	2 cut(s)	482, 853
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	8 cut(s)	201, 296, 662, 755, 861, 984, 1071, 1089
DpnII	GATC	8 cut(s)	199, 294, 660, 753, 859, 982, 1069, 1087
DraI	TTTAAA	2 cut(s)	379, 829
EaeI	YGGCCR	1 cut(s)	1056
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	764
Eco32I	GATATC	3 cut(s)	123, 141, 479
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	127, 796
EcoRV	GATATC	3 cut(s)	123, 141, 479
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	764
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	5 cut(s)	606, 629, 768, 934, 943
FaqI	GGGAC	3 cut(s)	10, 921, 1066
FatI	CATG	5 cut(s)	602, 625, 764, 930, 939
FbaI	TGATCA	2 cut(s)	199, 753
FblI	GTMKAC	2 cut(s)	78, 1035
Fnu4HI	GCNGC	3 cut(s)	600, 882, 1026
FokI	GGATG	1 cut(s)	1119
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	3 cut(s)	600, 882, 1026
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	3 cut(s)	600, 882, 1026
GsuI	CTGGAG	3 cut(s)	672, 800, 819
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	1058
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	606, 629, 768, 934, 943
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	4 cut(s)	17, 105, 554, 934
HphI	GGTGA	3 cut(s)	135, 178, 549
Hpy166II	GTNNAC	4 cut(s)	79, 304, 470, 1036
Hpy188I	TCNGA	4 cut(s)	294, 660, 1087, 1103
Hpy188III	TCNNGA	5 cut(s)	689, 724, 817, 931, 1094
Hpy8I	GTNNAC	4 cut(s)	79, 304, 470, 1036
HpyAV	CCTTC	2 cut(s)	156, 311
HpyCH4III	ACNGT	2 cut(s)	1033, 1049
HpyCH4V	TGCA	4 cut(s)	464, 837, 1010, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 509
HpyF3I	CTNAG	2 cut(s)	482, 853
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	5 cut(s)	606, 629, 768, 934, 943
HspAI	GCGC	1 cut(s)	276
KasI	GGCGCC	1 cut(s)	275
Ksp22I	TGATCA	2 cut(s)	199, 753
Kzo9I	GATC	8 cut(s)	199, 294, 660, 753, 859, 982, 1069, 1087
LmnI	GCTCC	4 cut(s)	295, 373, 491, 638
Lsp1109I	GCAGC	2 cut(s)	611, 1037
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	628, 709, 743
MalI	GATC	8 cut(s)	201, 296, 662, 755, 861, 984, 1071, 1089
MboI	GATC	8 cut(s)	199, 294, 660, 753, 859, 982, 1069, 1087
MboII	GAAGA	6 cut(s)	43, 62, 544, 547, 645, 854
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	1087
MhlI	GDGCHC	1 cut(s)	764
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	548, 943
MmeI	TCCRAC	2 cut(s)	262, 1010
MseI	TTAA	4 cut(s)	378, 518, 828, 1074
MslI	CAYNNNNRTG	1 cut(s)	899
MspR9I	CCNGG	2 cut(s)	129, 798
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	129, 798
MwoI	GCNNNNNNNGC	2 cut(s)	282, 509
NarI	GGCGCC	1 cut(s)	276
NdeII	GATC	8 cut(s)	199, 294, 660, 753, 859, 982, 1069, 1087
NlaIII	CATG	5 cut(s)	606, 629, 768, 934, 943
NlaIV	GGNNCC	4 cut(s)	26, 277, 369, 580
NmuCI	GTSAC	1 cut(s)	709
PagI	TCATGA	1 cut(s)	930
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	17, 105
PkrI	GCNGC	3 cut(s)	601, 883, 1027
PleI	GAGTC	2 cut(s)	548, 942
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	2 cut(s)	548, 942
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	127, 796
PspGI	CCWGG	2 cut(s)	127, 796
PspN4I	GGNNCC	4 cut(s)	26, 277, 369, 580
PspPI	GGNCC	1 cut(s)	24
PspPPI	RGGWCCY	1 cut(s)	24
PstNI	CAGNNNCTG	2 cut(s)	551, 1031
PsuI	RGATCY	1 cut(s)	1087
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	4 cut(s)	378, 518, 828, 1074
SatI	GCNGC	3 cut(s)	600, 882, 1026
Sau3AI	GATC	8 cut(s)	199, 294, 660, 753, 859, 982, 1069, 1087
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	2 cut(s)	548, 943
ScrFI	CCNGG	2 cut(s)	129, 798
SduI	GDGCHC	1 cut(s)	764
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
SsiI	CCGC	2 cut(s)	338, 882
SspDI	GGCGCC	1 cut(s)	275
SspI	AATATT	1 cut(s)	847
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	127, 796
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	1033, 1049
TaqI	TCGA	2 cut(s)	923, 1068
TatI	WGTACW	1 cut(s)	467
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	2 cut(s)	17, 105
Tru1I	TTAA	4 cut(s)	378, 518, 828, 1074
Tru9I	TTAA	4 cut(s)	378, 518, 828, 1074
TscAI	CASTG	6 cut(s)	88, 313, 352, 477, 960, 1054
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	2 cut(s)	599, 1025
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	6 cut(s)	17, 53, 243, 330, 385, 919
TspGWI	ACGGA	1 cut(s)	920
TspRI	CASTG	6 cut(s)	88, 313, 352, 477, 960, 1054
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	2 cut(s)	538, 925
XcmI	CCANNNNNNNNNTGG	3 cut(s)	36, 496, 632
XmiI	GTMKAC	2 cut(s)	78, 1035
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.