Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Forward (+)

13076836 .. 13077751

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAATTTGACTTGAAATTTTTTGATTTGGTGCAGGCTTGTACAGAGATGATAATGCCAACCAGTGGAAGCAATAAGGACAGCATATTCCCAGCTTCTGATTGGGATTACAAAGACCAAGCCTCGGTATGCAAAAGCAGATTTGGCATTGAACCTAGGCCCCTTTGGGTCACCACTGAGTTCGGCGGCCATGATATTGAGAGGGTTTTGAAAAGATATGGAAGCAATATTATCTTCTTCAATGGCTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTGAAGAATATATCCAACAGCATAGTAGCCATTGTTGCAAAAGAAGGTGCTCACCATGTAGATTTGATGTTCAAGAGCAGTGAGGATCCAGAATGGCTTAAAGATGTGAGGAAACAAGAGATCAAGATCATTGCAAAGTGGATATCCCAATATTACCATGACCTTGCTCAACTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

152

Amino Acids

17.33

Weight (kDa)

6.07

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	2 cut(s)	356, 369
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	3 cut(s)	65, 124, 263
AflII	CTTAAG	1 cut(s)	247
AgsI	TTSAA	5 cut(s)	16, 152, 211, 241, 349
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	356, 369
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	158, 187
ApoI	RAATTY	1 cut(s)	17
AspA2I	CCTAGG	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	163, 320
AvrII	CCTAGG	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	247
BisI	GCNGC	1 cut(s)	187
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	161, 363
BsaBI	GATNNNNATC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	123, 155, 257
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 124, 263
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	123, 155, 257
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	3 cut(s)	65, 124, 263
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	63
BseYI	CCCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	160, 189
BsiHKAI	GWGCWC	1 cut(s)	328
BslI	CCNNNNNNNGG	3 cut(s)	65, 124, 263
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	160, 189
Bso31I	GGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	361, 396, 402
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	160, 189
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	161, 363
BspPI	GGATC	2 cut(s)	356, 369
BspTI	CTTAAG	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	123, 155, 257
BssMI	GATC	3 cut(s)	361, 396, 402
BssT1I	CCWWGG	2 cut(s)	155, 257
BstAFI	CTTAAG	1 cut(s)	247
BstAUI	TGTACA	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	177
BstEII	GGTNACC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	364, 399, 405
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	361, 396, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 311
BstPI	GGTNACC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	160, 189
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	3 cut(s)	70, 174, 361
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	3 cut(s)	191, 332, 434
CviJI	RGCY	8 cut(s)	38, 95, 122, 160, 189, 246, 305, 373
CviKI_1	RGCY	8 cut(s)	38, 95, 122, 160, 189, 246, 305, 373
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	363, 398, 404
DpnII	GATC	3 cut(s)	361, 396, 402
EaeI	YGGCCR	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	155, 257
Eco31I	GGTCTC	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	159
EcoO65I	GGTNACC	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	155, 257
ErhI	CCWWGG	2 cut(s)	155, 257
FaeI	CATG	3 cut(s)	194, 335, 437
FaiI	YATR	8 cut(s)	86, 130, 192, 219, 287, 299, 333, 435
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FatI	CATG	3 cut(s)	190, 331, 433
Fnu4HI	GCNGC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	160, 189
Hin1II	CATG	3 cut(s)	194, 335, 437
HphI	GGTGA	2 cut(s)	163, 320
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	3 cut(s)	349, 365, 400
HpyAV	CCTTC	1 cut(s)	314
HpyCH4V	TGCA	5 cut(s)	4, 34, 132, 314, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 311
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	194, 335, 437
Kzo9I	GATC	3 cut(s)	361, 396, 402
LpnPI	CCDG	4 cut(s)	20, 76, 105, 378
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	363, 398, 404
MboI	GATC	3 cut(s)	361, 396, 402
MboII	GAAGA	3 cut(s)	226, 229, 292
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	2 cut(s)	5, 17
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	133, 195, 263, 352, 378
MseI	TTAA	2 cut(s)	248, 375
MspCI	CTTAAG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	144, 311
NdeII	GATC	3 cut(s)	361, 396, 402
NlaIII	CATG	3 cut(s)	194, 335, 437
NlaIV	GGNNCC	2 cut(s)	161, 363
NmuCI	GTSAC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	161, 363
PspPI	GGNCC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	248, 375
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	3 cut(s)	361, 396, 402
Sau96I	GGNCC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	4 cut(s)	97, 157, 325, 441
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	5, 17
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	2 cut(s)	229, 428
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	155, 257
TasI	AATT	2 cut(s)	5, 17
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	1 cut(s)	189
Tru1I	TTAA	2 cut(s)	248, 375
Tru9I	TTAA	2 cut(s)	248, 375
TscAI	CASTG	3 cut(s)	70, 181, 361
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspRI	CASTG	3 cut(s)	70, 181, 361
Van91I	CCANNNNNTGG	1 cut(s)	65
Vha464I	CTTAAG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	17
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.