Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003108

Physical Location & Seq

Genomic Coordinates Reverse (-)

2700953 .. 2703651

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATTTTTATCCATGACAACTTTGGACATTTCTCTCTCTCGAAGTTGCCAAAGCTTCTCCACACACTTATCTCTCTGTGCGTCTCTCTCTCTAAGTTGCCAAAGCTTCTCCACACACTTGTTAAAATTCCAAATCTGTCTGCCACAAACATGAAGATAACAAAACTCAAAGATTCCTCAATATTTCTCTGGTTTTCTTTCTTCTGTTTGCTGCTGTCTCCTTCCACTTCCTTTGCCAGAACCACACTTCCTGCTAGGTTTCCATCTTCTCTCGTTTCCCCTGAAAAGCTCTCATCACTTTCTTCTTCTGAAAAAAACCAAATTTACAGAACCAGATACTTCACCCAAATACTTGACCATTTCAATTTCTACCCCAAAAGCTACCAAACCTTCCAACAAAGGTATTTGATCAACGACACGCATTGGGGAGGAGCCAAGAGCAATGCTCCGATCTTTGTTTACACAGGAAATGAAGGAAATATAGACTGGTTTGCACAAAACACTGGCTTTTTGTATGAGACAGCTCCCCACTTCAAAGCCCTCATCGTTTTCATTGAGCATAGATTCTATGGGAAGTCTATACCCTATGGGGGAAACAGGGAGGTAGCTTATAGCAATGCAACCACACTTGGATATTTGAGTTCAACACAGGCACTGGCAGATTATGCGTCCTTAATCATTGATTTGAAGAAAAATTTATCCGCAACTGATTCTCCTGTGGTGGTCTTCGGAGGTTCCTATGGAGGCATGCTGGCAGCATGGTTTAGGTTGAAGTATCCGCACGTTACAATTGGAGCCTTGGCATCATCGGCTCCCATCCTCAATTTTGAGAATATTACATCTCCGTACAGCTTCAGCAACATCGTCACTCAAGACTTTAGGAGTGAGAGTGAAAATTGCTACAAAGTGATCAAGGGCTCATGGGAACAGATCGAAAGCACAGCAGATGAACCTGGAGGGCTCGAACTGCTCCGAAATTCATTTAAAATATGCAAGAATTATATTAGTGCAGATCGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

341

Amino Acids

38.28

Weight (kDa)

9.15

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	116 - 333	3.8e-57	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24280 AT2G24280
fragaria_vesca	FvH4_3g30240 FvH4_6g19570 FvH4_6g19580 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670 FvH4_6g48670
malus_domestica	MD12G1032200.v1.1
prunus_persica	Prupe.7G100400_v2.0.a1 Prupe.7G100500_v2.0.a1
pyrus_communis	pycom11g12430 pycom12g02980
rosa_chinensis	RchiOBHm_Chr3g0474931 RchiOBHm_Chr3g0474941
rosa_laevigata	RLG00000023876 RLG00000023878
rosa_multiflora	Rmu_co8205018.1_g000001 Rmu_sc0003093.1_g000003 Rmu_sc0003093.1_g000004 Rmu_sc0014618.1_g000001
rosa_roxburghii	Rroxscaffold_6G00406680 Rroxscaffold_6G00406700 Rroxscaffold_6G00406710 Rroxscaffold_7G00214050
rosa_rugosa	Rorug03G0145600
rosa_samantha	Rh3AG195100 Rh3BG225100 Rh3BG225200 Rh3CG220000 Rh3CG220100 Rh3DG220500 Rh3DG220600
rosa_wichuraiana	Rw3G017750 Rw3G017760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	702, 779
AcsI	RAATTY	4 cut(s)	126, 321, 694, 976
AcuI	CTGAAG	1 cut(s)	838
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	5 cut(s)	364, 535, 645, 688, 772
AjnI	CCWGG	1 cut(s)	952
AloI	GAACNNNNNNTCC	2 cut(s)	232, 264
AluBI	AGCT	7 cut(s)	55, 106, 289, 381, 524, 608, 852
AluI	AGCT	7 cut(s)	55, 106, 289, 381, 524, 608, 852
Alw26I	GTCTC	3 cut(s)	88, 222, 512
AlwNI	CAGNNNCTG	1 cut(s)	655
ApeKI	GCWGC	2 cut(s)	211, 755
ApoI	RAATTY	4 cut(s)	126, 321, 694, 976
AsuHPI	GGTGA	1 cut(s)	334
BanII	GRGCYC	2 cut(s)	920, 963
BbsI	GAAGAC	1 cut(s)	718
BbvI	GCAGC	2 cut(s)	198, 767
BccI	CCATC	2 cut(s)	271, 824
BciT130I	CCWGG	1 cut(s)	954
BciVI	GTATCC	1 cut(s)	786
BclI	TGATCA	2 cut(s)	408, 909
BcoDI	GTCTC	3 cut(s)	88, 222, 512
BfaI	CTAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	786
BisI	GCNGC	2 cut(s)	212, 756
BlsI	GCNGC	2 cut(s)	213, 757
Bme1390I	CCNGG	1 cut(s)	954
BmiI	GGNNCC	4 cut(s)	433, 736, 796, 813
BmrFI	CCNGG	1 cut(s)	954
BmsI	GCATC	1 cut(s)	812
BpiI	GAAGAC	1 cut(s)	718
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpmI	CTGGAG	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	855
Bsa29I	ATCGAT	1 cut(s)	1015
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	798
BsaXI	ACNNNNNCTCC	4 cut(s)	697, 727, 874, 904
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse1I	ACTGG	3 cut(s)	491, 508, 660
Bse3DI	GCAATG	2 cut(s)	448, 622
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	954
BseCI	ATCGAT	1 cut(s)	1015
BseDI	CCNNGG	1 cut(s)	798
BseGI	GGATG	1 cut(s)	816
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMI	GCAATG	2 cut(s)	448, 622
BseNI	ACTGG	3 cut(s)	491, 508, 660
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	198, 767
BshVI	ATCGAT	1 cut(s)	1015
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	3 cut(s)	88, 222, 512
BsmBI	CGTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	920, 963
Bsp143I	GATC	6 cut(s)	408, 450, 909, 930, 1012, 1016
BspACI	CCGC	2 cut(s)	702, 779
BspDI	ATCGAT	1 cut(s)	1015
BspLI	GGNNCC	4 cut(s)	433, 736, 796, 813
BsrDI	GCAATG	2 cut(s)	448, 622
BsrI	ACTGG	3 cut(s)	491, 508, 660
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	6 cut(s)	408, 450, 909, 930, 1012, 1016
BssT1I	CCWWGG	1 cut(s)	798
Bst2UI	CCWGG	1 cut(s)	954
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	749, 753
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	816
BstKTI	GATC	6 cut(s)	411, 453, 912, 933, 1015, 1019
BstMAI	GTCTC	3 cut(s)	88, 222, 512
BstMBI	GATC	6 cut(s)	408, 450, 909, 930, 1012, 1016
BstMWI	GCNNNNNNNGC	3 cut(s)	665, 809, 967
BstNI	CCWGG	1 cut(s)	954
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	1 cut(s)	952
BstV1I	GCAGC	2 cut(s)	198, 767
BstV2I	GAAGAC	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	1015
BsuI	GTATCC	1 cut(s)	786
BsuTUI	ATCGAT	1 cut(s)	1015
BtsCI	GGATG	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	501, 653
Cac8I	GCNNGC	2 cut(s)	749, 753
CaiI	CAGNNNCTG	1 cut(s)	655
ClaI	ATCGAT	1 cut(s)	1015
CseI	GACGC	2 cut(s)	70, 657
Csp6I	GTAC	1 cut(s)	847
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	5 cut(s)	14, 151, 748, 759, 921
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	6 cut(s)	410, 452, 911, 932, 1014, 1018
DpnII	GATC	6 cut(s)	408, 450, 909, 930, 1012, 1016
DraI	TTTAAA	1 cut(s)	985
Eco130I	CCWWGG	1 cut(s)	798
Eco24I	GRGCYC	2 cut(s)	920, 963
Eco57I	CTGAAG	1 cut(s)	838
EcoRII	CCWGG	1 cut(s)	952
EcoT14I	CCWWGG	1 cut(s)	798
EcoT38I	GRGCYC	2 cut(s)	920, 963
ErhI	CCWWGG	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	5 cut(s)	17, 154, 751, 762, 924
FatI	CATG	5 cut(s)	13, 150, 747, 758, 920
FbaI	TGATCA	2 cut(s)	408, 909
Fnu4HI	GCNGC	2 cut(s)	212, 756
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	2 cut(s)	920, 963
Fsp4HI	GCNGC	2 cut(s)	212, 756
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	212, 756
GsuI	CTGGAG	1 cut(s)	975
HgaI	GACGC	2 cut(s)	70, 657
Hin1II	CATG	5 cut(s)	17, 154, 751, 762, 924
HindIII	AAGCTT	2 cut(s)	53, 104
HinfI	GANTC	3 cut(s)	173, 564, 710
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	4 cut(s)	310, 450, 731, 974
Hpy188III	TCNNGA	3 cut(s)	40, 872, 1020
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	231, 400, 467
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	4 cut(s)	494, 620, 993, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	665, 809, 967
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	5 cut(s)	17, 154, 751, 762, 924
Ksp22I	TGATCA	2 cut(s)	408, 909
Kzo9I	GATC	6 cut(s)	408, 450, 909, 930, 1012, 1016
LmnI	GCTCC	6 cut(s)	431, 451, 529, 794, 817, 975
Lsp1109I	GCAGC	2 cut(s)	198, 767
LweI	GCATC	1 cut(s)	812
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	2 cut(s)	784, 865
MalI	GATC	6 cut(s)	410, 452, 911, 932, 1014, 1018
MboI	GATC	6 cut(s)	408, 450, 909, 930, 1012, 1016
MboII	GAAGA	7 cut(s)	166, 193, 258, 294, 297, 700, 718
MfeI	CAATTG	1 cut(s)	789
MhlI	GDGCHC	2 cut(s)	920, 963
MluCI	AATT	9 cut(s)	126, 321, 364, 694, 789, 823, 895, 976, 997
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	8 cut(s)	187, 422, 551, 595, 725, 737, 830, 950
MseI	TTAA	3 cut(s)	123, 674, 984
MslI	CAYNNNNRTG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	954
MunI	CAATTG	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	954
MwoI	GCNNNNNNNGC	3 cut(s)	665, 809, 967
NdeII	GATC	6 cut(s)	408, 450, 909, 930, 1012, 1016
NlaIII	CATG	5 cut(s)	17, 154, 751, 762, 924
NlaIV	GGNNCC	4 cut(s)	433, 736, 796, 813
NmuCI	GTSAC	1 cut(s)	865
NspI	RCATGY	1 cut(s)	751
PaeI	GCATGC	1 cut(s)	751
PfeI	GAWTC	3 cut(s)	173, 564, 710
PkrI	GCNGC	2 cut(s)	213, 757
Psp6I	CCWGG	1 cut(s)	952
PspGI	CCWGG	1 cut(s)	952
PspN4I	GGNNCC	4 cut(s)	433, 736, 796, 813
PstNI	CAGNNNCTG	1 cut(s)	655
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	123, 674, 984
SatI	GCNGC	2 cut(s)	212, 756
Sau3AI	GATC	6 cut(s)	408, 450, 909, 930, 1012, 1016
ScrFI	CCNGG	1 cut(s)	954
SduI	GDGCHC	2 cut(s)	920, 963
SfaNI	GCATC	1 cut(s)	812
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	870
SmoI	CTYRAG	1 cut(s)	870
SphI	GCATGC	1 cut(s)	751
Sse9I	AATT	9 cut(s)	126, 321, 364, 694, 789, 823, 895, 976, 997
SsiI	CCGC	2 cut(s)	702, 779
SspI	AATATT	2 cut(s)	183, 835
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	952
StyI	CCWWGG	1 cut(s)	798
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	4 cut(s)	41, 933, 963, 1015
TasI	AATT	9 cut(s)	126, 321, 364, 694, 789, 823, 895, 976, 997
TfiI	GAWTC	3 cut(s)	173, 564, 710
Tru1I	TTAA	3 cut(s)	123, 674, 984
Tru9I	TTAA	3 cut(s)	123, 674, 984
TscAI	CASTG	2 cut(s)	508, 660
TseFI	GTSAC	1 cut(s)	865
TseI	GCWGC	2 cut(s)	211, 755
Tsp45I	GTSAC	1 cut(s)	865
TspDTI	ATGAA	5 cut(s)	167, 486, 541, 963, 969
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	2 cut(s)	508, 660
XapI	RAATTY	4 cut(s)	126, 321, 694, 976
XceI	RCATGY	1 cut(s)	751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.