RLG00000023876

Lysosomal Pro-X

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
29411729 .. 29417386
5658 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023876

Sequence Viewer

Length: 1530 bp
ATGACAGAATCTAGGTCCCCATTTCTTTTCTGGTTCTCTTTCTTCTGTTTGCTTCATTCTCTTCCTGTCTACTCTGCCAAATCCTCACATCGTAGATTCCCATCTTTACTGATATCCCCAGGAGAAAAGATATCACCTTCTGCTGGTCAAAACCAACTTTACAGAACCAAATACTTCACCCAAGTCCTTGATCATTTCAATTACTATCCCAAGAGCAATGAAACTTTCCAACAGAGGTATTTGATAAATGATACGTTCTGGAGAGGCGCCAAGAGCAATGCTCCAATCTTTGTTTACACTGGTAATGAAGGGAACATAGAATGGTTTGCGGAGAACACTGGTTTTCTGTATGACACGGCTCCCCATTTTAAAGCCCTCATCATCTTCATTGAGCATAGGTTCTATGGAAAGTCTCTACCTTTTGGGGGCAGGAAAGATGTGGCTTATAGCAATGCAAGCACACTGGGATATCTAAGCTCCACACAAGCCTTGGCAGATTATGCTTCCTTAATTATTGATTTGAAGAAGAATTTGACAGCAACTGACTCACCTGTAGTGGTCTTTGGAGGTTCCTATGGGGGAATGCTGGCAGCATGGTTTAGGTTGAAATATCCCCATGTTACAATTGGAGCTTTGGCATCTTCTTCTCCGATCCTCAATTTTGAGAACATAACATCTCCAGATAGCTTCAACAATATAGTCACTAAAGACTTTAGGAGTGAGAGTGAAAGTTGTTACAGAGTGATCAAGGGCTCATGGGAAAATATCAAAGGCACCGCAAAGCAACCTGGAGGGCTTGAGCTACTTCGGAAATCGTTTAAACTATGCACGAATAATTTTAGCTTAGATGATCTTCAAAATTGGCTTGAAGCCGCTTATCTTTACACAGCAATGACGGATTATCCTACTCCATCGAATTTCATGAGTCCCATGCCAGCATATCCAGTGAAACAGATGTGTAAGGCAATAGATGATCCAACAACGGGAAATGATACATTTGCAAAGCTATATGGTGCAGCTACTGTCTACTATAATTACAGTGGGACGGCCAAGTGTTTCGATCTTAATGATAAATCAGATCCTCACGACCTCGGAGGATGGGATTGGCAGGCGTGTACAGAGATGATAATGCAAACAGATGGTAACAATAAGGAGAGCATGTTCCCACCTTCTGAGTGGCAATACAAAGATCAAGTCTCTTATTGCGAAGAGACTTACGGCGTTGAGCCTAGGCCTAATTGGATCACCACGGAGTTTGGCGGCCATGATATCAAGAGGGTTTTGAGAAGATTTGGGAGCAACATCATCTTTTTTAATGGCTTAAGAGACCCTTGGAGTGGTGGAGGGGTGCTGAACAATATTTCCAAGAGGATAGTAGCAATTGTTGCAAAAGAAGGTGCTCACCATGTTGACTTGAGGTTAAAAACTAGTGAAGATCCAGAATGGCTTAATGATGTGAGGAAGCAAGAGATCAAGATCATTGCGAAGTGGATCTCAGAATATTATCATGACCTTGCTGATAGACATTAG

Protein Analysis

510

Amino Acids

57.96

Weight (kDa)

6.65

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 61 - 488 7.9e-85 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 266, 773
AccI GTMKAC 2 cut(s) 69, 1026
AciI CCGC 4 cut(s) 329, 777, 873, 1260
AclWI GGATC 6 cut(s) 646, 968, 1073, 1250, 1430, 1499
AcoI YGGCCR 2 cut(s) 1047, 1261
AcsI RAATTY 2 cut(s) 529, 916
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 1117
AfiI CCNNNNNNNGG 4 cut(s) 143, 425, 983, 1337
AflII CTTAAG 1 cut(s) 1321
AgsI TTSAA 6 cut(s) 199, 523, 607, 691, 857, 869
AhlI ACTAGT 1 cut(s) 1427
AjnI CCWGG 2 cut(s) 118, 787
AloI GAACNNNNNNTCC 4 cut(s) 1145, 1177, 1346, 1378
AluBI AGCT 7 cut(s) 477, 632, 687, 802, 843, 1006, 1019
AluI AGCT 7 cut(s) 477, 632, 687, 802, 843, 1006, 1019
Alw21I GWGCWC 1 cut(s) 1402
Alw26I GTCTC 4 cut(s) 417, 1201, 1205, 1320
AlwI GGATC 6 cut(s) 646, 968, 1073, 1250, 1430, 1499
AlwNI CAGNNNCTG 2 cut(s) 542, 1022
AoxI GGCC 3 cut(s) 1047, 1232, 1261
ApeKI GCWGC 2 cut(s) 590, 1016
ApoI RAATTY 2 cut(s) 529, 916
ArsI GACNNNNNNTTYG 2 cut(s) 1179, 1211
AspA2I CCTAGG 1 cut(s) 1229
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 5 cut(s) 126, 169, 540, 1237, 1394
AvaII GGWCC 1 cut(s) 15
AvrII CCTAGG 1 cut(s) 1229
BanI GGYRCC 2 cut(s) 266, 773
BanII GRGCYC 1 cut(s) 755
Bbv12I GWGCWC 1 cut(s) 1402
BbvI GCAGC 2 cut(s) 602, 1028
BccI CCATC 4 cut(s) 109, 919, 1092, 1133
BceAI ACGGC 3 cut(s) 372, 1062, 1234
BciT130I CCWGG 2 cut(s) 120, 789
BclI TGATCA 2 cut(s) 190, 744
BcoDI GTCTC 4 cut(s) 417, 1201, 1205, 1320
BcuI ACTAGT 1 cut(s) 1427
BfaI CTAG 3 cut(s) 12, 1230, 1428
BfmI CTRYAG 1 cut(s) 552
BfoI RGCGCY 1 cut(s) 270
BfrI CTTAAG 1 cut(s) 1321
BisI GCNGC 4 cut(s) 591, 873, 1017, 1261
BlnI CCTAGG 1 cut(s) 1229
BlsI GCNGC 4 cut(s) 592, 874, 1018, 1262
Bme1390I CCNGG 2 cut(s) 120, 789
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 5 cut(s) 17, 268, 360, 571, 775
BmrFI CCNGG 2 cut(s) 120, 789
BmrI ACTGGG 1 cut(s) 473
BmsI GCATC 1 cut(s) 647
BmuI ACTGGG 1 cut(s) 473
BplI GAGNNNNNCTC 2 cut(s) 265, 297
BpmI CTGGAG 3 cut(s) 280, 663, 810
BpuEI CTTGAG 2 cut(s) 818, 1435
BsaBI GATNNNNATC 2 cut(s) 100, 1475
BsaHI GRCGYC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 1320
BsaJI CCNNGG 6 cut(s) 118, 489, 1090, 1229, 1248, 1331
BsaXI ACNNNNNCTCC 4 cut(s) 709, 739, 1145, 1175
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 425, 983, 1337
Bse1I ACTGG 4 cut(s) 304, 343, 468, 944
Bse3DI GCAATG 5 cut(s) 223, 283, 457, 897, 1479
Bse8I GATNNNNATC 2 cut(s) 100, 1475
BseBI CCWGG 2 cut(s) 120, 789
BseDI CCNNGG 6 cut(s) 118, 489, 1090, 1229, 1248, 1331
BseGI GGATG 1 cut(s) 1103
BseJI GATNNNNATC 2 cut(s) 100, 1475
BseLI CCNNNNNNNGG 4 cut(s) 143, 425, 983, 1337
BseMI GCAATG 5 cut(s) 223, 283, 457, 897, 1479
BseMII CTCAG 2 cut(s) 1164, 1509
BseNI ACTGG 4 cut(s) 304, 343, 468, 944
BseXI GCAGC 2 cut(s) 602, 1028
BsgI GTGCAG 1 cut(s) 1035
BshFI GGCC 3 cut(s) 1049, 1234, 1263
BshNI GGYRCC 2 cut(s) 266, 773
BsiHKAI GWGCWC 1 cut(s) 1402
BslFI GGGAC 2 cut(s) 912, 1057
BslI CCNNNNNNNGG 4 cut(s) 143, 425, 983, 1337
BsmAI GTCTC 4 cut(s) 417, 1201, 1205, 1320
BsmFI GGGAC 2 cut(s) 912, 1057
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 3 cut(s) 1049, 1234, 1263
Bso31I GGTCTC 1 cut(s) 1320
Bsp1286I GDGCHC 2 cut(s) 755, 1402
Bsp1407I TGTACA 1 cut(s) 1115
BspACI CCGC 4 cut(s) 329, 777, 873, 1260
BspANI GGCC 3 cut(s) 1049, 1234, 1263
BspCNI CTCAG 2 cut(s) 1165, 1508
BspHI TCATGA 2 cut(s) 921, 1507
BspLI GGNNCC 5 cut(s) 17, 268, 360, 571, 775
BspPI GGATC 6 cut(s) 646, 968, 1073, 1250, 1430, 1499
BspT107I GGYRCC 2 cut(s) 266, 773
BspTI CTTAAG 1 cut(s) 1321
BspTNI GGTCTC 1 cut(s) 1320
BsrDI GCAATG 5 cut(s) 223, 283, 457, 897, 1479
BsrGI TGTACA 1 cut(s) 1115
BsrI ACTGG 4 cut(s) 304, 343, 468, 944
BssECI CCNNGG 6 cut(s) 118, 489, 1090, 1229, 1248, 1331
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 3 cut(s) 489, 1229, 1331
Bst2UI CCWGG 2 cut(s) 120, 789
Bst4CI ACNGT 2 cut(s) 1024, 1040
Bst6I CTCTTC 2 cut(s) 66, 1203
BstACI GRCGYC 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 1321
BstAPI GCANNNNNTGC 2 cut(s) 500, 1385
BstAUI TGTACA 1 cut(s) 1115
BstC8I GCNNGC 4 cut(s) 457, 588, 936, 1110
BstDEI CTNAG 4 cut(s) 473, 844, 1173, 1495
BstDSI CCRYGG 1 cut(s) 1248
BstF5I GGATG 1 cut(s) 1103
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstMAI GTCTC 4 cut(s) 417, 1201, 1205, 1320
BstMWI GCNNNNNNNGC 4 cut(s) 273, 456, 500, 1385
BstNI CCWGG 2 cut(s) 120, 789
BstNSI RCATGY 1 cut(s) 1162
BstSCI CCNGG 2 cut(s) 118, 787
BstSFI CTRYAG 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 602, 1028
BstX2I RGATCY 3 cut(s) 1078, 1435, 1491
BstYI RGATCY 3 cut(s) 1078, 1435, 1491
BsuRI GGCC 3 cut(s) 1049, 1234, 1263
BtgI CCRYGG 1 cut(s) 1248
BtsCI GGATG 1 cut(s) 1103
BtsIMutI CAGTG 5 cut(s) 297, 336, 461, 951, 1045
Cac8I GCNNGC 4 cut(s) 457, 588, 936, 1110
CaiI CAGNNNCTG 2 cut(s) 542, 1022
CciI TCATGA 2 cut(s) 921, 1507
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 1116
CspCI CAANNNNNGTGG 2 cut(s) 1237, 1272
CviAII CATG 9 cut(s) 594, 617, 756, 922, 931, 1159, 1265, 1406, 1508
CviQI GTAC 1 cut(s) 1116
DdeI CTNAG 4 cut(s) 473, 844, 1173, 1495
DinI GGCGCC 1 cut(s) 268
DraI TTTAAA 2 cut(s) 370, 820
EaeI YGGCCR 2 cut(s) 1047, 1261
Eam1104I CTCTTC 2 cut(s) 66, 1203
EarI CTCTTC 2 cut(s) 66, 1203
Eco130I CCWWGG 3 cut(s) 489, 1229, 1331
Eco147I AGGCCT 1 cut(s) 1234
Eco24I GRGCYC 1 cut(s) 755
Eco31I GGTCTC 1 cut(s) 1320
Eco32I GATATC 4 cut(s) 114, 132, 470, 1270
Eco47I GGWCC 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 2 cut(s) 118, 787
EcoRV GATATC 4 cut(s) 114, 132, 470, 1270
EcoT14I CCWWGG 3 cut(s) 489, 1229, 1331
EcoT38I GRGCYC 1 cut(s) 755
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 3 cut(s) 489, 1229, 1331
FaeI CATG 9 cut(s) 597, 620, 759, 925, 934, 1162, 1268, 1409, 1511
FalI AAGNNNNNCTT 2 cut(s) 1315, 1347
FaqI GGGAC 2 cut(s) 912, 1057
FatI CATG 9 cut(s) 593, 616, 755, 921, 930, 1158, 1264, 1405, 1507
FbaI TGATCA 2 cut(s) 190, 744
FblI GTMKAC 2 cut(s) 69, 1026
Fnu4HI GCNGC 4 cut(s) 591, 873, 1017, 1261
FokI GGATG 1 cut(s) 1110
FriOI GRGCYC 1 cut(s) 755
Fsp4HI GCNGC 4 cut(s) 591, 873, 1017, 1261
FspBI CTAG 3 cut(s) 12, 1230, 1428
GlaI GCGC 1 cut(s) 268
GluI GCNGC 4 cut(s) 591, 873, 1017, 1261
GsuI CTGGAG 3 cut(s) 280, 663, 810
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 3 cut(s) 1049, 1234, 1263
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 9 cut(s) 597, 620, 759, 925, 934, 1162, 1268, 1409, 1511
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 1411
HindII GTYRAC 1 cut(s) 1411
HinfI GANTC 4 cut(s) 8, 96, 545, 925
HphI GGTGA 5 cut(s) 126, 169, 540, 1237, 1394
Hpy166II GTNNAC 5 cut(s) 70, 295, 1027, 1116, 1411
Hpy188I TCNGA 6 cut(s) 651, 810, 1078, 1094, 1174, 1498
Hpy188III TCNNGA 8 cut(s) 259, 680, 922, 1085, 1273, 1439, 1474, 1508
Hpy8I GTNNAC 5 cut(s) 70, 295, 1027, 1116, 1411
HpyAV CCTTC 4 cut(s) 147, 302, 1179, 1388
HpyCH4III ACNGT 2 cut(s) 1024, 1040
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 6 cut(s) 455, 828, 1001, 1016, 1132, 1388
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 456, 500, 1385
HpyF3I CTNAG 4 cut(s) 473, 844, 1173, 1495
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 9 cut(s) 597, 620, 759, 925, 934, 1162, 1268, 1409, 1511
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
Ksp22I TGATCA 2 cut(s) 190, 744
LmnI GCTCC 5 cut(s) 286, 364, 482, 629, 1296
Lsp1109I GCAGC 2 cut(s) 602, 1028
LweI GCATC 1 cut(s) 647
MaeI CTAG 3 cut(s) 12, 1230, 1428
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 4 cut(s) 619, 700, 734, 1142
MfeI CAATTG 2 cut(s) 624, 1380
MflI RGATCY 3 cut(s) 1078, 1435, 1491
MhlI GDGCHC 2 cut(s) 755, 1402
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 2 cut(s) 539, 934
MmeI TCCRAC 2 cut(s) 253, 1001
MseI TTAA 8 cut(s) 369, 509, 819, 1065, 1314, 1322, 1421, 1449
MslI CAYNNNNRTG 1 cut(s) 890
MspCI CTTAAG 1 cut(s) 1321
MspR9I CCNGG 2 cut(s) 120, 789
MssI GTTTAAAC 1 cut(s) 820
MunI CAATTG 2 cut(s) 624, 1380
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 2 cut(s) 120, 789
MwoI GCNNNNNNNGC 4 cut(s) 273, 456, 500, 1385
NarI GGCGCC 1 cut(s) 267
NlaIII CATG 9 cut(s) 597, 620, 759, 925, 934, 1162, 1268, 1409, 1511
NlaIV GGNNCC 5 cut(s) 17, 268, 360, 571, 775
NmuCI GTSAC 1 cut(s) 700
NspI RCATGY 1 cut(s) 1162
PagI TCATGA 2 cut(s) 921, 1507
PceI AGGCCT 1 cut(s) 1234
PctI GAATGC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 8, 96
PkrI GCNGC 4 cut(s) 592, 874, 1018, 1262
PleI GAGTC 2 cut(s) 539, 933
PluTI GGCGCC 1 cut(s) 270
PmeI GTTTAAAC 1 cut(s) 820
PpsI GAGTC 2 cut(s) 539, 933
PpuMI RGGWCCY 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 118, 787
PspGI CCWGG 2 cut(s) 118, 787
PspN4I GGNNCC 5 cut(s) 17, 268, 360, 571, 775
PspPI GGNCC 1 cut(s) 15
PspPPI RGGWCCY 1 cut(s) 15
PstNI CAGNNNCTG 2 cut(s) 542, 1022
PsuI RGATCY 3 cut(s) 1078, 1435, 1491
RsaI GTAC 1 cut(s) 1117
RsaNI GTAC 1 cut(s) 1116
RseI CAYNNNNRTG 1 cut(s) 890
SaqAI TTAA 8 cut(s) 369, 509, 819, 1065, 1314, 1322, 1421, 1449
SatI GCNGC 4 cut(s) 591, 873, 1017, 1261
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 2 cut(s) 539, 934
ScrFI CCNGG 2 cut(s) 120, 789
SduI GDGCHC 2 cut(s) 755, 1402
SfaNI GCATC 1 cut(s) 647
SfcI CTRYAG 1 cut(s) 552
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 890
SmlI CTYRAG 3 cut(s) 797, 1321, 1414
SmoI CTYRAG 3 cut(s) 797, 1321, 1414
SpeI ACTAGT 1 cut(s) 1427
SseBI AGGCCT 1 cut(s) 1234
SsiI CCGC 4 cut(s) 329, 777, 873, 1260
SspDI GGCGCC 1 cut(s) 266
SspI AATATT 2 cut(s) 1360, 1502
SspMI CTAG 3 cut(s) 12, 1230, 1428
StuI AGGCCT 1 cut(s) 1234
StyD4I CCNGG 2 cut(s) 118, 787
StyI CCWWGG 3 cut(s) 489, 1229, 1331
TaaI ACNGT 2 cut(s) 1024, 1040
TaiI ACGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 914, 1059
TatI WGTACW 1 cut(s) 1115
TauI GCSGC 2 cut(s) 875, 1263
TfiI GAWTC 2 cut(s) 8, 96
Tru1I TTAA 8 cut(s) 369, 509, 819, 1065, 1314, 1322, 1421, 1449
Tru9I TTAA 8 cut(s) 369, 509, 819, 1065, 1314, 1322, 1421, 1449
TscAI CASTG 5 cut(s) 304, 343, 468, 951, 1045
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 2 cut(s) 590, 1016
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 5 cut(s) 44, 234, 321, 376, 910
TspGWI ACGGA 2 cut(s) 911, 1265
TspRI CASTG 5 cut(s) 304, 343, 468, 951, 1045
Vha464I CTTAAG 1 cut(s) 1321
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 2 cut(s) 529, 916
XceI RCATGY 1 cut(s) 1162
XcmI CCANNNNNNNNNTGG 4 cut(s) 27, 487, 623, 1173
XmaJI CCTAGG 1 cut(s) 1229
XmiI GTMKAC 2 cut(s) 69, 1026
XspI CTAG 3 cut(s) 12, 1230, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.