Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

28561958 .. 28566100

Gene Structure 4143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCAAGTTCACAGTTCCACTGTCTGCAATCAGTCAGAGTTTCTTCTGCATCTCGGCTTTTCATATCTACTTCATTTGATCATGGTAGAGTGAATTTTAAAAGAAATAGCAATTGTCTTGTTTATGCTTCCACCAACAACTTGAACAGGGACCATCATCCTCAATCAAAGGTCGACACAGTGCTAGATAGTATAAAATGGGATGACAAAGGTTTAGCAGTTGCATTAGCTCAAAATGTTGATACAGGAGCCATCTTGATGCAAGGTTTTGCGAACAGGGAAGCAGTGGCTACAACAATCTCCTCCCGTAAGGCCACATTCTACAGTCGGTCGCGATCAATGCTGTGGACAAAGGGCGAGACCTCCAATAATTTCATTAATGTCCATGACATCTTCCTTGATTGTGATCGGGACTCTATAATATACCTAGGGAAGCCTGATGGCCCGACTTGCCACACAGGAGCAGAGACTTGCTATTACACCTCGTTGATTGATTTGTTAGAAGATCAGCAGAGTGGATATAAATTCCCGTTGACCACTCTGAACTCTTTAGAATCTATAATTGCAAAGCGAAAAGGAGAACTAGATGTTCCACAAACTGGAAAGCCCTCATGGACTAGACGACTACTACTTAATGAGAAATTGTTGTGTTCAAAAATCAGGGAAGAGGCAGATGAGCTATGTCGAACATTAGAGGAGAATGAGGATATGTCGCGTACTGCATCAGAGATGGGAGATGTTCTTTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATAGAAGATGTTCTAGAAATTTTACGACAGAGATTTTCTCAGTCAGGTATCGAGGAAAAGAGAAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

289

Amino Acids

32.49

Weight (kDa)

6.66

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	87 - 160	1.4e-27	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	198 - 272	1.8e-10	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	334, 715
AcsI	RAATTY	3 cut(s)	94, 524, 801
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	145, 654
AluBI	AGCT	2 cut(s)	230, 679
AluI	AGCT	2 cut(s)	230, 679
Alw26I	GTCTC	2 cut(s)	353, 461
AoxI	GGCC	3 cut(s)	312, 442, 765
ApoI	RAATTY	3 cut(s)	94, 524, 801
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	792
AspA2I	CCTAGG	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	151, 443, 766
AvaII	GGWCC	1 cut(s)	151
AvrII	CCTAGG	1 cut(s)	427
BccI	CCATC	5 cut(s)	162, 260, 434, 724, 770
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	353, 461
BfaI	CTAG	6 cut(s)	185, 428, 584, 618, 797, 865
BfmI	CTRYAG	1 cut(s)	322
BlnI	CCTAGG	1 cut(s)	427
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	151, 443, 766
BmiI	GGNNCC	2 cut(s)	152, 250
BmsI	GCATC	3 cut(s)	59, 249, 731
BplI	GAGNNNNNCTC	2 cut(s)	805, 837
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	427, 753
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	604
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	427, 753
BseGI	GGATG	2 cut(s)	157, 208
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	1 cut(s)	836
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	2 cut(s)	292, 710
Bsh1236I	CGCG	2 cut(s)	334, 715
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	314, 444, 767
BsiEI	CGRYCG	1 cut(s)	332
BslFI	GGGAC	2 cut(s)	164, 425
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	2 cut(s)	353, 461
BsmFI	GGGAC	2 cut(s)	164, 425
BsnI	GGCC	3 cut(s)	314, 444, 767
Bso31I	GGTCTC	1 cut(s)	353
Bsp143I	GATC	4 cut(s)	79, 335, 406, 505
Bsp19I	CCATGG	1 cut(s)	753
Bsp68I	TCGCGA	1 cut(s)	334
BspANI	GGCC	3 cut(s)	314, 444, 767
BspCNI	CTCAG	1 cut(s)	835
BspFNI	CGCG	2 cut(s)	334, 715
BspLI	GGNNCC	2 cut(s)	152, 250
BspTNI	GGTCTC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	427, 753
BssMI	GATC	4 cut(s)	79, 335, 406, 505
BssT1I	CCWWGG	2 cut(s)	427, 753
Bst4CI	ACNGT	4 cut(s)	15, 23, 181, 326
Bst6I	CTCTTC	1 cut(s)	660
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	1 cut(s)	822
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	157, 208
BstFNI	CGCG	2 cut(s)	334, 715
BstKTI	GATC	4 cut(s)	82, 338, 409, 508
BstMAI	GTCTC	2 cut(s)	353, 461
BstMBI	GATC	4 cut(s)	79, 335, 406, 505
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 450
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	2 cut(s)	334, 715
BsuRI	GGCC	3 cut(s)	314, 444, 767
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	2 cut(s)	157, 208
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	3 cut(s)	19, 186, 291
BtuMI	TCGCGA	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	765
Cfr13I	GGNCC	3 cut(s)	151, 443, 766
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	4 cut(s)	83, 386, 612, 754
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	1 cut(s)	822
DpnI	GATC	4 cut(s)	81, 337, 408, 507
DpnII	GATC	4 cut(s)	79, 335, 406, 505
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco130I	CCWWGG	2 cut(s)	427, 753
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	427, 753
ErhI	CCWWGG	2 cut(s)	427, 753
FaeI	CATG	4 cut(s)	86, 389, 615, 757
FaqI	GGGAC	2 cut(s)	164, 425
FatI	CATG	4 cut(s)	82, 385, 611, 753
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	174
FokI	GGATG	2 cut(s)	144, 215
FspBI	CTAG	6 cut(s)	185, 428, 584, 618, 797, 865
HaeIII	GGCC	3 cut(s)	314, 444, 767
Hin1II	CATG	4 cut(s)	86, 389, 615, 757
HincII	GTYRAC	2 cut(s)	175, 534
HindII	GTYRAC	2 cut(s)	175, 534
HinfI	GANTC	2 cut(s)	413, 554
Hpy166II	GTNNAC	4 cut(s)	11, 175, 348, 534
Hpy188I	TCNGA	3 cut(s)	38, 543, 727
Hpy188III	TCNNGA	4 cut(s)	256, 333, 410, 797
Hpy8I	GTNNAC	4 cut(s)	11, 175, 348, 534
HpyCH4III	ACNGT	4 cut(s)	15, 23, 181, 326
HpyCH4V	TGCA	6 cut(s)	28, 50, 224, 262, 566, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 450
HpyF3I	CTNAG	1 cut(s)	822
Hsp92II	CATG	4 cut(s)	86, 389, 615, 757
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 335, 406, 505
LmnI	GCTCC	2 cut(s)	248, 461
LpnPI	CCDG	9 cut(s)	133, 231, 262, 444, 450, 585, 646, 749, 813
LweI	GCATC	3 cut(s)	59, 249, 731
MaeI	CTAG	6 cut(s)	185, 428, 584, 618, 797, 865
MalI	GATC	4 cut(s)	81, 337, 408, 507
MboI	GATC	4 cut(s)	79, 335, 406, 505
MboII	GAAGA	5 cut(s)	36, 385, 515, 677, 800
MfeI	CAATTG	1 cut(s)	112
MluCI	AATT	7 cut(s)	94, 112, 370, 524, 561, 641, 801
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	9 cut(s)	171, 313, 373, 493, 619, 661, 688, 697, 829
MroXI	GAANNNNTTC	1 cut(s)	792
MseI	TTAA	4 cut(s)	99, 378, 633, 771
MslI	CAYNNNNRTG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	112
MvnI	CGCG	2 cut(s)	334, 715
MwoI	GCNNNNNNNGC	2 cut(s)	340, 450
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	4 cut(s)	79, 335, 406, 505
NlaIII	CATG	4 cut(s)	86, 389, 615, 757
NlaIV	GGNNCC	2 cut(s)	152, 250
NmeAIII	GCCGAG	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	599
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	152, 250
PspPI	GGNCC	3 cut(s)	151, 443, 766
RruI	TCGCGA	1 cut(s)	334
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
RseI	CAYNNNNRTG	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	4 cut(s)	99, 378, 633, 771
Sau3AI	GATC	4 cut(s)	79, 335, 406, 505
Sau96I	GGNCC	3 cut(s)	151, 443, 766
SchI	GAGTC	1 cut(s)	407
SetI	ASST	9 cut(s)	174, 214, 232, 268, 365, 429, 485, 681, 832
SfaNI	GCATC	3 cut(s)	59, 249, 731
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	7 cut(s)	94, 112, 370, 524, 561, 641, 801
SspMI	CTAG	6 cut(s)	185, 428, 584, 618, 797, 865
StyI	CCWWGG	2 cut(s)	427, 753
TaaI	ACNGT	4 cut(s)	15, 23, 181, 326
TaqI	TCGA	3 cut(s)	174, 685, 834
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	7 cut(s)	94, 112, 370, 524, 561, 641, 801
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	4 cut(s)	99, 378, 633, 771
Tru9I	TTAA	4 cut(s)	99, 378, 633, 771
TscAI	CASTG	3 cut(s)	26, 186, 291
TspDTI	ATGAA	3 cut(s)	52, 63, 364
TspRI	CASTG	3 cut(s)	26, 186, 291
Van91I	CCANNNNNTGG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	3 cut(s)	94, 524, 801
XbaI	TCTAGA	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
XmaJI	CCTAGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	6 cut(s)	185, 428, 584, 618, 797, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.