Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

39868113 .. 39869453

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0330400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCAACAAGCACCCACAACAGGCTTTCGTTTCTACCCAACTGAAGAAGAACTCATCTCCTTCTACCTCCTCAACAAGCTCGAATCCAAGAACCAAGACAGCATTCGCCGCGTCATCCCAGACCTTGACATTTACAGCACCGAGCCATGGGAGCTCCCAAATTATGCAGCGGAGCTGTGCCGTGGAGACACCGAGCAGTGGTTCTTCTTTACGCCGAGGCAGCAACGAGAAGCGCAAGGTGGGAGACCTAACCGGACTACGGCTTCCGGCTACTGGAAGACAACTGGCTCTCCTGGGTATGTTTACTCCTCGGGTAATCGGGTCATTGGAGTGAAGAAAACCATGGTTTTCTACAAAGGGAAAGCTCCGACGGGAAGAAAGACCAAGTGGAAGATGAATGAGTACAGAGCCATTGAAGAAACAGCAGCTCCCTCAGCTACCACTAGTAATAGTGCTAGTACTGCTATCATTCCCAAGTTGAGGCATGAATTCCGACTGTGCCGGGTGTACATAGTATCGGGGAGTTCTCGAGCATTTGACAGGCGCCCGCTAGAAGGAAGCGGAGATGCATCACATCGACGAAGTGATAATTTAACGGGGGCAAGTGCTTCTTCATCTCACCAGGCAGCAATGGTAGCAGAGAAAACAAGCTCATCATCTGATACTCGTTCAAATTCAGGAGACCGAGCTGATTTCCAAGCAGAGAATAATCAATGGGAAATGGATGATGATCTTCAACAACCTCTATGGGAATGGGAGCAGCTAAACTTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

258

Amino Acids

29.25

Weight (kDa)

7.73

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 136	1.8e-40	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	543
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	109, 170, 548, 561
AcsI	RAATTY	2 cut(s)	488, 673
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	544
AfaI	GTAC	3 cut(s)	404, 460, 509
AfiI	CCNNNNNNNGG	7 cut(s)	20, 147, 198, 259, 273, 480, 554
AgsI	TTSAA	3 cut(s)	416, 672, 737
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	2 cut(s)	292, 621
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	9 cut(s)	79, 154, 175, 365, 428, 437, 651, 689, 763
AluI	AGCT	9 cut(s)	79, 154, 175, 365, 428, 437, 651, 689, 763
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	3 cut(s)	180, 238, 675
Ama87I	CYCGRG	2 cut(s)	310, 528
ApeKI	GCWGC	5 cut(s)	167, 220, 425, 626, 760
ApoI	RAATTY	2 cut(s)	488, 673
AspLEI	GCGC	2 cut(s)	235, 546
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	611
AvaI	CYCGRG	2 cut(s)	310, 528
BanI	GGYRCC	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	433
BbvI	GCAGC	5 cut(s)	179, 232, 437, 638, 772
BceAI	ACGGC	2 cut(s)	165, 276
BciT130I	CCWGG	2 cut(s)	294, 623
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	3 cut(s)	180, 238, 675
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	3 cut(s)	444, 456, 551
BfoI	RGCGCY	1 cut(s)	547
BisI	GCNGC	6 cut(s)	109, 168, 221, 426, 627, 761
BlsI	GCNGC	6 cut(s)	110, 169, 222, 427, 628, 762
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	3 cut(s)	294, 503, 623
BmeT110I	CYCGRG	2 cut(s)	310, 528
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	3 cut(s)	294, 503, 623
BmsI	GCATC	2 cut(s)	556, 578
BpiI	GAAGAC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	544
BsaI	GGTCTC	2 cut(s)	238, 675
BsaJI	CCNNGG	6 cut(s)	146, 181, 215, 293, 309, 342
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 412, 442
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 147, 198, 259, 273, 480, 554
Bse1I	ACTGG	2 cut(s)	278, 289
Bse3DI	GCAATG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	294, 623
BseDI	CCNNGG	6 cut(s)	146, 181, 215, 293, 309, 342
BseGI	GGATG	2 cut(s)	114, 730
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	7 cut(s)	20, 147, 198, 259, 273, 480, 554
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	278, 289
BseRI	GAGGAG	2 cut(s)	59, 298
BseXI	GCAGC	5 cut(s)	179, 232, 437, 638, 772
Bsh1236I	CGCG	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	2 cut(s)	310, 528
BsiSI	CCGG	3 cut(s)	253, 267, 502
BslI	CCNNNNNNNGG	7 cut(s)	20, 147, 198, 259, 273, 480, 554
BsmAI	GTCTC	3 cut(s)	180, 238, 675
BsmI	GAATGC	1 cut(s)	102
Bso31I	GGTCTC	2 cut(s)	238, 675
BsoBI	CYCGRG	2 cut(s)	310, 528
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	730
Bsp19I	CCATGG	2 cut(s)	146, 342
BspACI	CCGC	4 cut(s)	109, 170, 548, 561
BspCNI	CTCAG	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	543
BspTNI	GGTCTC	2 cut(s)	238, 675
BsrDI	GCAATG	1 cut(s)	636
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	278, 289
BssECI	CCNNGG	6 cut(s)	146, 181, 215, 293, 309, 342
BssMI	GATC	1 cut(s)	730
BssNI	GRCGYC	1 cut(s)	544
BssT1I	CCWWGG	2 cut(s)	146, 342
Bst2UI	CCWGG	2 cut(s)	294, 623
Bst4CI	ACNGT	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	544
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	433
BstDSI	CCRYGG	3 cut(s)	146, 181, 342
BstF5I	GGATG	2 cut(s)	114, 730
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	2 cut(s)	235, 546
BstKTI	GATC	1 cut(s)	733
BstMAI	GTCTC	3 cut(s)	180, 238, 675
BstMBI	GATC	1 cut(s)	730
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 151, 220, 434, 461, 635
BstNI	CCWGG	2 cut(s)	294, 623
BstSCI	CCNGG	3 cut(s)	292, 501, 621
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	5 cut(s)	179, 232, 437, 638, 772
BstV2I	GAAGAC	1 cut(s)	284
BtgI	CCRYGG	3 cut(s)	146, 181, 342
BtsCI	GGATG	2 cut(s)	114, 730
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	2 cut(s)	235, 546
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	403, 459, 508
CviAII	CATG	3 cut(s)	147, 343, 485
CviQI	GTAC	3 cut(s)	403, 459, 508
DdeI	CTNAG	1 cut(s)	433
DinI	GGCGCC	1 cut(s)	545
DpnI	GATC	1 cut(s)	732
DpnII	GATC	1 cut(s)	730
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	146, 342
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	2 cut(s)	238, 675
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	2 cut(s)	310, 528
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	292, 621
EcoT14I	CCWWGG	2 cut(s)	146, 342
EcoT22I	ATGCAT	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	545
EheI	GGCGCC	1 cut(s)	545
ErhI	CCWWGG	2 cut(s)	146, 342
FaeI	CATG	3 cut(s)	150, 346, 488
FaiI	YATR	7 cut(s)	148, 165, 300, 344, 486, 512, 748
FalI	AAGNNNNNCTT	2 cut(s)	595, 627
FatI	CATG	3 cut(s)	146, 342, 484
FauI	CCCGC	1 cut(s)	555
Fnu4HI	GCNGC	6 cut(s)	109, 168, 221, 426, 627, 761
FokI	GGATG	2 cut(s)	101, 737
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	6 cut(s)	109, 168, 221, 426, 627, 761
FspBI	CTAG	3 cut(s)	444, 456, 551
GlaI	GCGC	2 cut(s)	234, 545
GluI	GCNGC	6 cut(s)	109, 168, 221, 426, 627, 761
HaeII	RGCGCY	1 cut(s)	547
HapII	CCGG	3 cut(s)	253, 267, 502
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	235, 546
Hin1I	GRCGYC	1 cut(s)	544
Hin1II	CATG	3 cut(s)	150, 346, 488
Hin6I	GCGC	2 cut(s)	233, 544
HinP1I	GCGC	2 cut(s)	233, 544
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	3 cut(s)	253, 267, 502
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	304, 508
Hpy188I	TCNGA	3 cut(s)	369, 494, 661
Hpy188III	TCNNGA	2 cut(s)	528, 678
Hpy8I	GTNNAC	2 cut(s)	304, 508
Hpy99I	CGWCG	2 cut(s)	373, 582
HpyAV	CCTTC	2 cut(s)	70, 548
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4V	TGCA	3 cut(s)	4, 167, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 151, 220, 434, 461, 635
HpyF3I	CTNAG	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	544
Hsp92II	CATG	3 cut(s)	150, 346, 488
HspAI	GCGC	2 cut(s)	233, 544
KasI	GGCGCC	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	730
LmnI	GCTCC	6 cut(s)	151, 159, 172, 370, 433, 757
Lsp1109I	GCAGC	5 cut(s)	179, 232, 437, 638, 772
LweI	GCATC	2 cut(s)	556, 578
MaeI	CTAG	3 cut(s)	444, 456, 551
MalI	GATC	1 cut(s)	732
MboI	GATC	1 cut(s)	730
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	4 cut(s)	160, 488, 589, 673
Mly113I	GGCGCC	1 cut(s)	544
MmeI	TCCRAC	2 cut(s)	392, 517
MnlI	CCTC	7 cut(s)	77, 80, 210, 319, 442, 474, 753
Mph1103I	ATGCAT	1 cut(s)	571
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	3 cut(s)	253, 267, 502
MspR9I	CCNGG	3 cut(s)	294, 503, 623
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	294, 623
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	6 cut(s)	108, 151, 220, 434, 461, 635
NarI	GGCGCC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	503
NcoI	CCATGG	2 cut(s)	146, 342
NdeII	GATC	1 cut(s)	730
NlaIII	CATG	3 cut(s)	150, 346, 488
NlaIV	GGNNCC	1 cut(s)	545
NmeAIII	GCCGAG	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	571
PaeR7I	CTCGAG	1 cut(s)	528
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	110, 169, 222, 427, 628, 762
PluTI	GGCGCC	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	292, 621
PspGI	CCWGG	2 cut(s)	292, 621
PspN4I	GGNNCC	1 cut(s)	545
RsaI	GTAC	3 cut(s)	404, 460, 509
RsaNI	GTAC	3 cut(s)	403, 459, 508
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	6 cut(s)	109, 168, 221, 426, 627, 761
Sau3AI	GATC	1 cut(s)	730
ScaI	AGTACT	1 cut(s)	460
ScrFI	CCNGG	3 cut(s)	294, 503, 623
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	556, 578
SfoI	GGCGCC	1 cut(s)	545
Sfr274I	CTCGAG	1 cut(s)	528
SlaI	CTCGAG	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	4 cut(s)	160, 488, 589, 673
SsiI	CCGC	4 cut(s)	109, 170, 548, 561
SspDI	GGCGCC	1 cut(s)	543
SspMI	CTAG	3 cut(s)	444, 456, 551
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	3 cut(s)	292, 501, 621
StyI	CCWWGG	2 cut(s)	146, 342
TaaI	ACNGT	1 cut(s)	498
TaqI	TCGA	3 cut(s)	81, 529, 577
TaqII	GACCGA	1 cut(s)	699
TasI	AATT	4 cut(s)	160, 488, 589, 673
TatI	WGTACW	3 cut(s)	402, 458, 507
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	5 cut(s)	167, 220, 425, 626, 760
TspDTI	ATGAA	3 cut(s)	410, 501, 603
TspRI	CASTG	1 cut(s)	203
XapI	RAATTY	2 cut(s)	488, 673
XhoI	CTCGAG	1 cut(s)	528
XspI	CTAG	3 cut(s)	444, 456, 551
ZrmI	AGTACT	1 cut(s)	460
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.