Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

59639866 .. 59640889

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG430800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCAAGGGTTTGCAAACAGGGAAGCAGTGGCTACAACAATCTCCTCCCGGAAGGCCACATTCTACAGTCGGTCGCGATCAGCACTGTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTCCATGACATCTTCCTTGATTGTGATCGAGACTCTATAATATACCTAGGGAAGCCTGATGGCCCTACTTGCCACACAGGAGCAGAGACTTGCTACTACACCTCGTTGATTGATTTGTTAGAAGATCAGCAGAGCGGAGGAGATAAATTCCCGTTGACCACTCTGAACTCTTTAGAATCTACAATTGCAAAGCGAAAAGGAGAACTAGAAGTCCCACAACCTGGAAAGCCCTCGTGGACGAGACGACTACTACTTGATGAGAAATTGTTGTGTTCGAAAATCAGGGAAGAGGCAGATGAGCTATGTCGAACATTAGAGGAGAATGAGGATAAGTCACGTACTGCTGCAGAGATGGGAGATGTGCTCTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATGGAAGATGTTCTAGAAATTCTACGACGTAGATTTTCTCAGTCGGGTATCGAGGAAAAGAGAAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

203

Amino Acids

22.97

Weight (kDa)

5.75

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	1 - 74	5.2e-28	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	113 - 187	9.6e-12	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	1 cut(s)	76
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	269, 546
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	343
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	4 cut(s)	95, 147, 203, 358
AoxI	GGCC	3 cut(s)	54, 184, 510
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	269, 546
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	185, 511
AsuC2I	CCSGG	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	398
AvrII	CCTAGG	1 cut(s)	169
BauI	CACGAG	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	176, 469, 515
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	4 cut(s)	95, 147, 203, 358
BfaI	CTAG	4 cut(s)	170, 329, 542, 610
BfmI	CTRYAG	2 cut(s)	64, 468
BisI	GCNGC	1 cut(s)	468
BlnI	CCTAGG	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	2 cut(s)	49, 345
BmgT120I	GGNCC	2 cut(s)	185, 511
BmrFI	CCNGG	2 cut(s)	49, 345
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
Bpu14I	TTCGAA	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	169, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	169, 498
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	581
BseRI	GAGGAG	3 cut(s)	34, 276, 455
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	56, 186, 512
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	4 cut(s)	95, 147, 203, 358
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	56, 186, 512
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	77, 148, 247
Bsp19I	CCATGG	1 cut(s)	498
Bsp68I	TCGCGA	1 cut(s)	76
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	3 cut(s)	56, 186, 512
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	472
BspT104I	TTCGAA	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	169, 498
BssMI	GATC	3 cut(s)	77, 148, 247
BssSI	CACGAG	1 cut(s)	355
BssT1I	CCWWGG	2 cut(s)	169, 498
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	68, 87
Bst6I	CTCTTC	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	76
BstKTI	GATC	3 cut(s)	80, 151, 250
BstMAI	GTCTC	4 cut(s)	95, 147, 203, 358
BstMBI	GATC	3 cut(s)	77, 148, 247
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	47, 343
BstSFI	CTRYAG	2 cut(s)	64, 468
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	454
BsuRI	GGCC	3 cut(s)	56, 186, 512
BtgI	CCRYGG	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 83
BtuMI	TCGCGA	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	185, 511
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	2 cut(s)	128, 499
CviJI	RGCY	8 cut(s)	32, 56, 178, 186, 352, 424, 512, 609
CviKI_1	RGCY	8 cut(s)	32, 56, 178, 186, 352, 424, 512, 609
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	3 cut(s)	79, 150, 249
DpnII	GATC	3 cut(s)	77, 148, 247
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	169, 498
Eco31I	GGTCTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	169, 498
ErhI	CCWWGG	2 cut(s)	169, 498
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	2 cut(s)	131, 502
FaiI	YATR	5 cut(s)	129, 161, 166, 427, 500
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	127, 498
Fnu4HI	GCNGC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	4 cut(s)	170, 329, 542, 610
GluI	GCNGC	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	56, 186, 512
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	2 cut(s)	131, 502
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	2 cut(s)	155, 299
HpaII	CCGG	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	90, 279, 360
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	3 cut(s)	75, 152, 542
Hpy8I	GTNNAC	3 cut(s)	90, 279, 360
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	68, 87
HpyCH4IV	ACGT	2 cut(s)	460, 556
HpyCH4V	TGCA	4 cut(s)	4, 14, 311, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	2 cut(s)	460, 556
Hsp92II	CATG	2 cut(s)	131, 502
Kzo9I	GATC	3 cut(s)	77, 148, 247
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	8 cut(s)	4, 62, 186, 192, 330, 357, 391, 494
Lsp1109I	GCAGC	1 cut(s)	454
MaeI	CTAG	4 cut(s)	170, 329, 542, 610
MaeII	ACGT	2 cut(s)	460, 556
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	3 cut(s)	79, 150, 249
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	3 cut(s)	77, 148, 247
MboII	GAAGA	4 cut(s)	127, 257, 422, 545
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	5 cut(s)	112, 269, 306, 386, 546
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	55, 115, 235, 254, 364, 406, 433, 442, 574
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	120, 516
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	2 cut(s)	49, 345
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	77, 148, 247
NlaIII	CATG	2 cut(s)	131, 502
NmuCI	GTSAC	1 cut(s)	456
NruI	TCGCGA	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	185, 511
PstI	CTGCAG	1 cut(s)	472
RruI	TCGCGA	1 cut(s)	76
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	120, 516
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	77, 148, 247
Sau96I	GGNCC	2 cut(s)	185, 511
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	49, 345
SduI	GDGCHC	1 cut(s)	489
SetI	ASST	7 cut(s)	107, 171, 227, 346, 426, 463, 559
SfcI	CTRYAG	2 cut(s)	64, 468
SfuI	TTCGAA	1 cut(s)	398
Sse9I	AATT	5 cut(s)	112, 269, 306, 386, 546
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	4 cut(s)	170, 329, 542, 610
StyD4I	CCNGG	2 cut(s)	47, 343
StyI	CCWWGG	2 cut(s)	169, 498
TaaI	ACNGT	2 cut(s)	68, 87
TaiI	ACGT	2 cut(s)	463, 559
TaqI	TCGA	4 cut(s)	151, 398, 430, 579
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	5 cut(s)	112, 269, 306, 386, 546
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	120, 516
Tru9I	TTAA	2 cut(s)	120, 516
TscAI	CASTG	2 cut(s)	33, 90
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	33, 90
Van91I	CCANNNNNTGG	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	2 cut(s)	269, 546
XbaI	TCTAGA	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmaJI	CCTAGG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	4 cut(s)	170, 329, 542, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.