Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

33770588 .. 33771727

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018676

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGAGTTCACAGTTCCACTGTCTGCAATCGGTCAGAGCTTCTTCGTGGTCTCGGCTTTCCACATCTTCTCCATTTTATCATGGTAGACTGAATTTCAAAAGAAAGAGCAATTGTCTTGTTTATGCTTCCACCAACAACTTCAACAGGGACCTTTTTCTTCAATCAAAGCTACTTGCCAGTTGCCACACAGGAGCAGAGACTTGCTATTACACCTCGGTGATTGATTTGTTACAAGATCAACAGATTGGAGGAGATAAATTCCAGCTGACAACTCTGAACTCTTTAGAATCTACAATTGCAAAGCGAAAAGGAGAACTAGAAGTCCCACAAACTGGAAAGCCCTCGTGGACTATACGACTACTACTTGATGAGAAATTGTTTTGTTTACAAATCAGGGAAGAGGCAGATGAGCTATGTCTAACACTAGAGGAGAAGGAGAATGAGGATAAGTCAAGTACTGCCTCAGAGATGGGAGATGTGCTTTATTATTCCATGGTTCTGCTGGCCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

172

Amino Acids

19.36

Weight (kDa)

5.64

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-PH	PF01503	109 - 170	8.3e-06	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	94, 260
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	100, 145, 164
AleI	CACNNNNGTG	1 cut(s)	218
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	4 cut(s)	41, 172, 268, 415
AluI	AGCT	4 cut(s)	41, 172, 268, 415
Alw26I	GTCTC	2 cut(s)	57, 194
AoxI	GGCC	1 cut(s)	507
ApoI	RAATTY	2 cut(s)	94, 260
AspS9I	GGNCC	2 cut(s)	151, 508
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	346
BccI	CCATC	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	57, 194
BfaI	CTAG	2 cut(s)	320, 428
BmcAI	AGTACT	1 cut(s)	460
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	151, 508
BmiI	GGNNCC	2 cut(s)	152, 510
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	216, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	180, 340
BseDI	CCNNGG	2 cut(s)	216, 495
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	180, 340
BseRI	GAGGAG	2 cut(s)	267, 446
BshFI	GGCC	1 cut(s)	509
BslFI	GGGAC	2 cut(s)	164, 311
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	57, 194
BsmFI	GGGAC	2 cut(s)	164, 311
BsnI	GGCC	1 cut(s)	509
Bso31I	GGTCTC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	495
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	1 cut(s)	479
BspLI	GGNNCC	2 cut(s)	152, 510
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	180, 340
BssECI	CCNNGG	2 cut(s)	216, 495
BssMI	GATC	1 cut(s)	238
BssSI	CACGAG	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	15, 23
Bst6I	CTCTTC	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	466, 513
BstDSI	CCRYGG	1 cut(s)	495
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	2 cut(s)	57, 194
BstMBI	GATC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	509
BtgI	CCRYGG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	507
Cfr13I	GGNCC	2 cut(s)	151, 508
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	2 cut(s)	83, 496
CviJI	RGCY	7 cut(s)	41, 58, 172, 268, 343, 415, 509
CviKI_1	RGCY	7 cut(s)	41, 58, 172, 268, 343, 415, 509
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	2 cut(s)	466, 513
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	86, 499
FaiI	YATR	5 cut(s)	84, 126, 356, 418, 497
FaqI	GGGAC	2 cut(s)	164, 311
FatI	CATG	2 cut(s)	82, 495
FblI	GTMKAC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	320, 428
HaeIII	GGCC	1 cut(s)	509
Hin1II	CATG	2 cut(s)	86, 499
HinfI	GANTC	1 cut(s)	290
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	4 cut(s)	11, 89, 351, 389
Hpy188I	TCNGA	3 cut(s)	38, 279, 469
Hpy8I	GTNNAC	4 cut(s)	11, 89, 351, 389
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	2 cut(s)	15, 23
HpyCH4V	TGCA	2 cut(s)	28, 302
HpyF3I	CTNAG	2 cut(s)	466, 513
Hsp92II	CATG	2 cut(s)	86, 499
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	7 cut(s)	133, 177, 193, 278, 321, 382, 491
MaeI	CTAG	2 cut(s)	320, 428
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	4 cut(s)	36, 60, 152, 413
MfeI	CAATTG	2 cut(s)	112, 297
MluCI	AATT	5 cut(s)	94, 112, 260, 297, 377
MnlI	CCTC	7 cut(s)	226, 245, 355, 397, 424, 439, 475
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	268
MunI	CAATTG	2 cut(s)	112, 297
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	86, 499
NlaIV	GGNNCC	2 cut(s)	152, 510
NmeAIII	GCCGAG	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	152, 510
PspPI	GGNCC	2 cut(s)	151, 508
PspPPI	RGGWCCY	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	2 cut(s)	151, 508
ScaI	AGTACT	1 cut(s)	460
SetI	ASST	6 cut(s)	43, 156, 174, 218, 270, 417
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	94, 112, 260, 297, 377
SspMI	CTAG	2 cut(s)	320, 428
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	15, 23
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	5 cut(s)	94, 112, 260, 297, 377
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	290
TscAI	CASTG	1 cut(s)	26
TspRI	CASTG	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	2 cut(s)	94, 260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	2 cut(s)	320, 428
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.