Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

39864523 .. 39866006

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0330300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTCTATTTGTTGGAGAAGATTGCTCATTTGAGGACCGATTTAGCGCTTCCTTTAGAATTTCGTGATACAATTTGTCATCGATACCCACAGTACTTTAAAGTTGTTGCAACTGCGAGAGGTCCAGCATTAGAATTAACTCATTGGGATCCTGAGCTTGCTGTATCAGCTGCTGAGTTATCTGAAGAGGAAAATCGTGCTAGAGAATTAGAAGAGAGGAATTTGATTATAGATAGGCCTCTCAAGTTCAATAAACTAAAGTTACCAAGGGGTCTTAATCTTTCCAAGGTTGTCCATGAGATCTTCAGCCTTACTGTGGAGAAGAAAACTCATGTAGATCACCTTACTCATTTCCGCGAGGAGTTCAGGTTTTCTCAACAGGTCAGGGGAATGCCTGACATGTTTTATATCTCGTTGAAAGGAGATAGGGATTCAGTTTTTCTTAGGGAAGCATACCGTGATTCTCAATTGATAGACAAGGATCGTCTGCTGATTATAAAAGAGAAGCTTCGATCTATTATTGCAGTTCCACGGTATCCTAGAAGGGGTACTCCCAATAGAGAGGCAGATGGTGCTGAAGGAACCAATGAGGCACAAGATGGAACTGTTGATGAGGGAGAGGAATGGTCTGATACTGATAACTTTATGAGTGATGAAGATGATGAGTTTGATGATGATGATGATGTAGATGATTGGAGTGATGAAGATGAAGATACACCCCCAGATTTCAACGAAGATGGGAAAACATTAAACAATGAACCGAGCAAACCAATTAATCAAGAAGGCTATTCGACAGAGAATGACGAGAGGATGCTTGTTCCAGTGTTGCCAGATGGTCGGCCAAGAGGACGCTGGGGAATTCAACATAGTATCTCCACAGCTCTGCAACCTGCTTTAAGTGCAAAGCCTATATCCTTTTTCTCATCCTTGAGGTGTCATGTACCAATCTACCAGCCTACCAGGGTTGCAGCAATGAGGCAAAGTGTCAGGAGAGCTTGTGAGAAACAAACTACCGTATTGCTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

342

Amino Acids

39.53

Weight (kDa)

4.99

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	5 - 96	1.1e-18	Plant organelle RNA recognition domain
PORR	PF11955	97 - 174	2.6e-25	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	898
AccII	CGCG	1 cut(s)	357
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	3 cut(s)	143, 156, 489
AcoI	YGGCCR	1 cut(s)	839
AcsI	RAATTY	3 cut(s)	59, 220, 858
AcuI	CTGAAG	3 cut(s)	204, 289, 597
AfaI	GTAC	3 cut(s)	95, 550, 942
AfeI	AGCGCT	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	316, 545
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	250, 418, 730, 863
AjnI	CCWGG	1 cut(s)	959
AluBI	AGCT	5 cut(s)	157, 170, 508, 881, 995
AluI	AGCT	5 cut(s)	157, 170, 508, 881, 995
AlwI	GGATC	3 cut(s)	143, 156, 489
AlwNI	CAGNNNCTG	1 cut(s)	173
Aor51HI	AGCGCT	1 cut(s)	48
AoxI	GGCC	2 cut(s)	236, 839
ApeKI	GCWGC	2 cut(s)	170, 968
ApoI	RAATTY	3 cut(s)	59, 220, 858
AseI	ATTAAT	1 cut(s)	774
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	36, 122
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	36, 122
BamHI	GGATCC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	1022
BbvI	GCAGC	2 cut(s)	157, 980
BccI	CCATC	4 cut(s)	563, 593, 731, 827
BciT130I	CCWGG	1 cut(s)	961
BciVI	GTATCC	1 cut(s)	546
BfaI	CTAG	2 cut(s)	201, 540
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	898
BfuI	GTATCC	1 cut(s)	546
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	2 cut(s)	171, 969
BlsI	GCNGC	2 cut(s)	172, 970
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	961
Bme18I	GGWCC	2 cut(s)	36, 122
BmgT120I	GGNCC	2 cut(s)	36, 122
BmiI	GGNNCC	2 cut(s)	150, 583
BmrFI	CCNGG	1 cut(s)	961
BmsI	GCATC	1 cut(s)	801
Bpu10I	CCTNAGC	2 cut(s)	153, 1022
BpuEI	CTTGAG	2 cut(s)	227, 949
Bsa29I	ATCGAT	1 cut(s)	82
BsaJI	CCNNGG	4 cut(s)	266, 285, 530, 960
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 982, 1012
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 545
Bse1I	ACTGG	1 cut(s)	821
Bse3DI	GCAATG	1 cut(s)	978
BseBI	CCWGG	1 cut(s)	961
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	4 cut(s)	266, 285, 530, 960
BseGI	GGATG	2 cut(s)	816, 923
BseLI	CCNNNNNNNGG	2 cut(s)	316, 545
BseMI	GCAATG	1 cut(s)	978
BseMII	CTCAG	3 cut(s)	144, 165, 1013
BseNI	ACTGG	1 cut(s)	821
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	157, 980
BseYI	CCCAGC	1 cut(s)	852
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	238, 841
BshVI	ATCGAT	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	316, 545
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	238, 841
Bsp143I	GATC	5 cut(s)	148, 300, 337, 481, 512
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	238, 841
BspCNI	CTCAG	3 cut(s)	145, 166, 1014
BspDI	ATCGAT	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	150, 583
BspMI	ACCTGC	1 cut(s)	898
BspPI	GGATC	3 cut(s)	143, 156, 489
BsrDI	GCAATG	1 cut(s)	978
BsrI	ACTGG	1 cut(s)	821
BssECI	CCNNGG	4 cut(s)	266, 285, 530, 960
BssMI	GATC	5 cut(s)	148, 300, 337, 481, 512
BssT1I	CCWWGG	2 cut(s)	266, 285
Bst2UI	CCWGG	1 cut(s)	961
Bst4CI	ACNGT	6 cut(s)	93, 316, 458, 534, 607, 1015
Bst6I	CTCTTC	2 cut(s)	180, 207
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	4 cut(s)	153, 174, 443, 1022
BstDSI	CCRYGG	1 cut(s)	530
BstF5I	GGATG	2 cut(s)	816, 923
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	5 cut(s)	151, 303, 340, 484, 515
BstMBI	GATC	5 cut(s)	148, 300, 337, 481, 512
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 572, 899
BstNI	CCWGG	1 cut(s)	961
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	959
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	157, 980
BstX2I	RGATCY	2 cut(s)	148, 300
BstYI	RGATCY	2 cut(s)	148, 300
Bsu15I	ATCGAT	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	238, 841
BsuTUI	ATCGAT	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	816, 923
BtsIMutI	CAGTG	1 cut(s)	828
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	36, 122
ClaI	ATCGAT	1 cut(s)	82
CseI	GACGC	1 cut(s)	858
Csp6I	GTAC	3 cut(s)	94, 549, 941
CviAII	CATG	4 cut(s)	296, 332, 400, 938
CviQI	GTAC	3 cut(s)	94, 549, 941
DdeI	CTNAG	4 cut(s)	153, 174, 443, 1022
DpnI	GATC	5 cut(s)	150, 302, 339, 483, 514
DpnII	GATC	5 cut(s)	148, 300, 337, 481, 512
DraI	TTTAAA	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	839
Eam1104I	CTCTTC	2 cut(s)	180, 207
EarI	CTCTTC	2 cut(s)	180, 207
Eco130I	CCWWGG	2 cut(s)	266, 285
Eco147I	AGGCCT	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	36, 122
Eco47III	AGCGCT	1 cut(s)	48
Eco57I	CTGAAG	3 cut(s)	204, 289, 597
EcoRI	GAATTC	1 cut(s)	858
EcoRII	CCWGG	1 cut(s)	959
EcoT14I	CCWWGG	2 cut(s)	266, 285
ErhI	CCWWGG	2 cut(s)	266, 285
FaeI	CATG	4 cut(s)	299, 335, 403, 941
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FatI	CATG	4 cut(s)	295, 331, 399, 937
Fnu4HI	GCNGC	2 cut(s)	171, 969
FokI	GGATG	2 cut(s)	823, 910
Fsp4HI	GCNGC	2 cut(s)	171, 969
FspBI	CTAG	2 cut(s)	201, 540
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	171, 969
GsaI	CCCAGC	1 cut(s)	856
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	238, 841
HgaI	GACGC	1 cut(s)	858
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	299, 335, 403, 941
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	2 cut(s)	431, 461
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	184, 631
Hpy188III	TCNNGA	4 cut(s)	65, 152, 779, 988
HpyAV	CCTTC	3 cut(s)	537, 572, 776
HpyCH4III	ACNGT	6 cut(s)	93, 316, 458, 534, 607, 1015
HpyCH4V	TGCA	5 cut(s)	110, 524, 886, 902, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 572, 899
HpyF3I	CTNAG	4 cut(s)	153, 174, 443, 1022
Hsp92II	CATG	4 cut(s)	299, 335, 403, 941
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	5 cut(s)	148, 300, 337, 481, 512
Lsp1109I	GCAGC	2 cut(s)	157, 980
LweI	GCATC	1 cut(s)	801
MaeI	CTAG	2 cut(s)	201, 540
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	5 cut(s)	150, 302, 339, 483, 514
MboI	GATC	5 cut(s)	148, 300, 337, 481, 512
MboII	GAAGA	9 cut(s)	31, 197, 224, 295, 334, 668, 716, 722, 746
MfeI	CAATTG	1 cut(s)	467
MflI	RGATCY	2 cut(s)	148, 300
MluCI	AATT	8 cut(s)	59, 72, 134, 206, 220, 467, 771, 858
MseI	TTAA	6 cut(s)	99, 137, 276, 749, 774, 896
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	961
MunI	CAATTG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	961
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	167, 572, 899
NdeII	GATC	5 cut(s)	148, 300, 337, 481, 512
NlaIII	CATG	4 cut(s)	299, 335, 403, 941
NlaIV	GGNNCC	2 cut(s)	150, 583
NspI	RCATGY	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	238
PciI	ACATGT	1 cut(s)	399
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	431, 461
PkrI	GCNGC	2 cut(s)	172, 970
PscI	ACATGT	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	959
PspFI	CCCAGC	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	959
PspN4I	GGNNCC	2 cut(s)	150, 583
PspPI	GGNCC	2 cut(s)	36, 122
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	2 cut(s)	148, 300
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	95, 550, 942
RsaNI	GTAC	3 cut(s)	94, 549, 941
SaqAI	TTAA	6 cut(s)	99, 137, 276, 749, 774, 896
SatI	GCNGC	2 cut(s)	171, 969
Sau3AI	GATC	5 cut(s)	148, 300, 337, 481, 512
Sau96I	GGNCC	2 cut(s)	36, 122
ScaI	AGTACT	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	961
SfaNI	GCATC	1 cut(s)	801
SinI	GGWCC	2 cut(s)	36, 122
SmlI	CTYRAG	2 cut(s)	242, 928
SmoI	CTYRAG	2 cut(s)	242, 928
Sse9I	AATT	8 cut(s)	59, 72, 134, 206, 220, 467, 771, 858
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	2 cut(s)	201, 540
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	959
StyI	CCWWGG	2 cut(s)	266, 285
TaaI	ACNGT	6 cut(s)	93, 316, 458, 534, 607, 1015
TaqI	TCGA	3 cut(s)	82, 511, 791
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	8 cut(s)	59, 72, 134, 206, 220, 467, 771, 858
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	431, 461
Tru1I	TTAA	6 cut(s)	99, 137, 276, 749, 774, 896
Tru9I	TTAA	6 cut(s)	99, 137, 276, 749, 774, 896
TscAI	CASTG	1 cut(s)	828
TseI	GCWGC	2 cut(s)	170, 968
TspDTI	ATGAA	4 cut(s)	669, 717, 723, 771
TspRI	CASTG	1 cut(s)	828
VpaK11BI	GGWCC	2 cut(s)	36, 122
VspI	ATTAAT	1 cut(s)	774
XapI	RAATTY	3 cut(s)	59, 220, 858
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	849
XspI	CTAG	2 cut(s)	201, 540
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.