Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

65941090 .. 65943623

Gene Structure 2534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCAAGTTCACAGTTCCATTGTCTGCAATCGGTCAGAGTTTCTTCCCCGTCTCGGCTTTCCATATCTACTTCATCTTATCATGGTAGAGTGAATTTCAAAAGAAAGAGCAATTGTCTTGTTTATGCTTCCACCAACAACTTCAACAGGGACCTTCATCTTCAATCAAAGGTCGAAACAGTGTTAGACAGTGTAAAGTGGGATGACAAAGGTTTAGCAGTTGCAATAGCTCAAAATGTTGACACAGGAGCCATCTTGATGCAAGGGTTTGCAAACAGGGAAGCAGTGGCTACAACAATCTCCTCCCGGAAGGCCACATTCTACAGTCGGTCGCGATCAGCACTCTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTCCACGACATCTTCCTTGATTGTGATCGAGACTCTATAATATACCTAGGGAAGCCTGATGGCCCTACTTGCCACACAGGAGCAGAGACTTGCTATTACACCTCGGTGATTGATTTGTTAGAAGATCAGCAGAGCGGCGGAGATAAATTCCCGTTGACCACTCTGAACTCTTTAGAATCTACAATTGCAAAGCGAAAAGGTGAACTAGAAGTCCCACAATCTGGAAAGCCCTCGTGGACGAGACGACTACTACTTGATGAGAAATTGTTGTGTTCGAAAATCAGGGAAGAGGCAGATGAGCTGTGTCGAACATTAGAGGAGAATGAGGATAAGTCACGTACTGCCTCAGAGATGGGAGATGTGCTCTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATGGAAGATGTTCTAGAAATTCTACGACGTAGATTTTCTCAGTCGGGTATCGAGGAAAAGAGAAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

290

Amino Acids

32.45

Weight (kDa)

7.59

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	87 - 160	1e-27	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	200 - 273	1.8e-11	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	516
AccII	CGCG	1 cut(s)	334
AciI	CCGC	2 cut(s)	516, 519
AcsI	RAATTY	3 cut(s)	94, 527, 804
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	2 cut(s)	54, 602
AgsI	TTSAA	3 cut(s)	100, 145, 164
AleI	CACNNNNGTG	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	2 cut(s)	230, 682
AluI	AGCT	2 cut(s)	230, 682
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	5 cut(s)	57, 353, 405, 461, 616
AoxI	GGCC	3 cut(s)	312, 442, 768
ApoI	RAATTY	3 cut(s)	94, 527, 804
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	795
AspA2I	CCTAGG	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	151, 443, 769
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	499, 593
AsuII	TTCGAA	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	151
AvrII	CCTAGG	1 cut(s)	427
BauI	CACGAG	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	747
BccI	CCATC	4 cut(s)	260, 434, 727, 773
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	5 cut(s)	57, 353, 405, 461, 616
BfaI	CTAG	4 cut(s)	428, 587, 800, 868
BfmI	CTRYAG	1 cut(s)	322
BisI	GCNGC	1 cut(s)	517
BlnI	CCTAGG	1 cut(s)	427
BlsI	GCNGC	1 cut(s)	518
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	3 cut(s)	151, 443, 769
BmiI	GGNNCC	2 cut(s)	152, 250
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	729, 761
Bpu14I	TTCGAA	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	427, 483, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 602
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	427, 483, 756
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	54, 602
BseMII	CTCAG	2 cut(s)	741, 839
BseRI	GAGGAG	2 cut(s)	292, 713
Bsh1236I	CGCG	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	314, 444, 770
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	164, 578
BslI	CCNNNNNNNGG	2 cut(s)	54, 602
BsmAI	GTCTC	5 cut(s)	57, 353, 405, 461, 616
BsmBI	CGTCTC	2 cut(s)	57, 616
BsmFI	GGGAC	2 cut(s)	164, 578
BsnI	GGCC	3 cut(s)	314, 444, 770
Bso31I	GGTCTC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	3 cut(s)	335, 406, 505
Bsp19I	CCATGG	1 cut(s)	756
Bsp68I	TCGCGA	1 cut(s)	334
BspACI	CCGC	2 cut(s)	516, 519
BspANI	GGCC	3 cut(s)	314, 444, 770
BspCNI	CTCAG	2 cut(s)	740, 838
BspFNI	CGCG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	152, 250
BspT104I	TTCGAA	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	427, 483, 756
BssMI	GATC	3 cut(s)	335, 406, 505
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	427, 756
Bst2BI	CACGAG	1 cut(s)	613
Bst4CI	ACNGT	4 cut(s)	15, 181, 191, 326
Bst6I	CTCTTC	1 cut(s)	663
BstBAI	YACGTR	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	2 cut(s)	727, 825
BstDSI	CCRYGG	1 cut(s)	756
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	338, 409, 508
BstMAI	GTCTC	5 cut(s)	57, 353, 405, 461, 616
BstMBI	GATC	3 cut(s)	335, 406, 505
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	314, 444, 770
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	3 cut(s)	186, 196, 291
BtuMI	TCGCGA	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	768
Cfr13I	GGNCC	3 cut(s)	151, 443, 769
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	2 cut(s)	83, 757
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	2 cut(s)	727, 825
DpnI	GATC	3 cut(s)	337, 408, 507
DpnII	GATC	3 cut(s)	335, 406, 505
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	427, 756
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	427, 756
ErhI	CCWWGG	2 cut(s)	427, 756
Esp3I	CGTCTC	2 cut(s)	57, 616
FaeI	CATG	2 cut(s)	86, 760
FaiI	YATR	6 cut(s)	65, 84, 126, 419, 424, 758
FaqI	GGGAC	2 cut(s)	164, 578
FatI	CATG	2 cut(s)	82, 756
Fnu4HI	GCNGC	1 cut(s)	517
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	517
FspBI	CTAG	4 cut(s)	428, 587, 800, 868
GluI	GCNGC	1 cut(s)	517
HaeIII	GGCC	3 cut(s)	314, 444, 770
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	2 cut(s)	86, 760
HincII	GTYRAC	2 cut(s)	241, 537
HindII	GTYRAC	2 cut(s)	241, 537
HinfI	GANTC	2 cut(s)	413, 557
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	499, 593
Hpy166II	GTNNAC	6 cut(s)	11, 241, 385, 537, 584, 618
Hpy188I	TCNGA	3 cut(s)	38, 546, 730
Hpy188III	TCNNGA	6 cut(s)	256, 333, 346, 410, 603, 800
Hpy8I	GTNNAC	6 cut(s)	11, 241, 385, 537, 584, 618
Hpy99I	CGWCG	1 cut(s)	816
HpyAV	CCTTC	2 cut(s)	164, 304
HpyCH4III	ACNGT	4 cut(s)	15, 181, 191, 326
HpyCH4IV	ACGT	2 cut(s)	718, 814
HpyCH4V	TGCA	5 cut(s)	28, 224, 262, 272, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	2 cut(s)	727, 825
HpySE526I	ACGT	2 cut(s)	718, 814
Hsp92II	CATG	2 cut(s)	86, 760
Kzo9I	GATC	3 cut(s)	335, 406, 505
LmnI	GCTCC	2 cut(s)	248, 461
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	4 cut(s)	428, 587, 800, 868
MaeII	ACGT	2 cut(s)	718, 814
MaeIII	GTNAC	1 cut(s)	714
MalI	GATC	3 cut(s)	337, 408, 507
MbiI	CCGCTC	1 cut(s)	516
MboI	GATC	3 cut(s)	335, 406, 505
MboII	GAAGA	6 cut(s)	36, 152, 385, 515, 680, 803
MfeI	CAATTG	2 cut(s)	112, 564
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	7 cut(s)	94, 112, 370, 527, 564, 644, 804
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	9 cut(s)	313, 373, 493, 622, 664, 691, 700, 736, 832
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	2 cut(s)	378, 774
MslI	CAYNNNNRTG	2 cut(s)	257, 485
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	307
MunI	CAATTG	2 cut(s)	112, 564
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	307
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	3 cut(s)	335, 406, 505
NlaIII	CATG	2 cut(s)	86, 760
NlaIV	GGNNCC	2 cut(s)	152, 250
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	714
NruI	TCGCGA	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	656
OliI	CACNNNNGTG	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	602
PfoI	TCCNGGA	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	518
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	152, 250
PspPI	GGNCC	3 cut(s)	151, 443, 769
PspPPI	RGGWCCY	1 cut(s)	151
RruI	TCGCGA	1 cut(s)	334
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	2 cut(s)	257, 485
SaqAI	TTAA	2 cut(s)	378, 774
SatI	GCNGC	1 cut(s)	517
Sau3AI	GATC	3 cut(s)	335, 406, 505
Sau96I	GGNCC	3 cut(s)	151, 443, 769
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	257, 485
Sse9I	AATT	7 cut(s)	94, 112, 370, 527, 564, 644, 804
SsiI	CCGC	2 cut(s)	516, 519
SspMI	CTAG	4 cut(s)	428, 587, 800, 868
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	427, 756
TaaI	ACNGT	4 cut(s)	15, 181, 191, 326
TaiI	ACGT	2 cut(s)	721, 817
TaqI	TCGA	5 cut(s)	174, 409, 656, 688, 837
TaqII	GACCGA	2 cut(s)	22, 318
TasI	AATT	7 cut(s)	94, 112, 370, 527, 564, 644, 804
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	378, 774
Tru9I	TTAA	2 cut(s)	378, 774
TscAI	CASTG	3 cut(s)	186, 196, 291
TseFI	GTSAC	1 cut(s)	714
Tsp45I	GTSAC	1 cut(s)	714
TspDTI	ATGAA	3 cut(s)	63, 146, 364
TspRI	CASTG	3 cut(s)	186, 196, 291
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	3 cut(s)	94, 527, 804
XbaI	TCTAGA	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XmaJI	CCTAGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	4 cut(s)	428, 587, 800, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.