Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Forward (+)

23272055 .. 23276491

Gene Structure 4437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAAGTTCACAGTTCCACTGTCTGCAATCGGTCAGAGTTTCTTCCCCGTCTCAGCTTTCCATATCTACTTCGTTTGATCATGGTAGAGTGAGTTTCCAAAGAAAGAGCAATTGTCTTGTTTATGCTTCCACCAACAACTTCAACAGCGACCTTCATCTTCAATCAAAGGTCGAAACAGTGTTAGACAGTGTAAAATGGGATGACAAAGGTTTAGCGGTTGCAATAGCTCAAAATGTTGACACAGGAGCCATCTTAATGCAAGAATCTACAATTGCAAAGCGAAAAGGAGAACTAGAAGTCCCACAATCTGGAAAGCCCTCATGGACGAGACGACTACTACTTGATGAGAAATTGTTGTGTTCAAAAATCAGGGAAGAGGCAGATGAGCTATGTCGAACATTAGAGGAGAATGAGGATAAGTCACGTACTGCCTCAGAGATGGGAGATGTGCTCTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATGGAAGATGTTCTAGAAATTCTACGACGTAGATTTTCTCAGTCGGGTATCGAGGAAAAGAGAAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

192

Amino Acids

21.64

Weight (kDa)

6.91

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-PH	PF01503	104 - 176	1.3e-11	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	513
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	145, 164, 366
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	3 cut(s)	58, 230, 391
AluI	AGCT	3 cut(s)	58, 230, 391
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	57, 325
AoxI	GGCC	1 cut(s)	477
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	456
BccI	CCATC	3 cut(s)	260, 436, 482
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	57, 325
BfaI	CTAG	3 cut(s)	296, 509, 577
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	438, 470
BsaAI	YACGTR	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	3 cut(s)	68, 450, 548
BseRI	GAGGAG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	2 cut(s)	57, 325
BsmBI	CGTCTC	2 cut(s)	57, 325
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	79
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	3 cut(s)	67, 449, 547
BspLI	GGNNCC	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	15, 23, 181, 191
Bst6I	CTCTTC	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	54, 436, 534
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	2 cut(s)	57, 325
BstMBI	GATC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	479
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	19, 186, 196
Cac8I	GCNNGC	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	3 cut(s)	83, 324, 466
CviJI	RGCY	7 cut(s)	58, 230, 251, 319, 391, 479, 576
CviKI_1	RGCY	7 cut(s)	58, 230, 251, 319, 391, 479, 576
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	3 cut(s)	54, 436, 534
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	2 cut(s)	57, 325
FaeI	CATG	3 cut(s)	86, 327, 469
FaiI	YATR	6 cut(s)	65, 84, 126, 325, 394, 467
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	82, 323, 465
FbaI	TGATCA	1 cut(s)	79
FokI	GGATG	1 cut(s)	215
FspBI	CTAG	3 cut(s)	296, 509, 577
HaeIII	GGCC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	86, 327, 469
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	11, 241
Hpy188I	TCNGA	2 cut(s)	38, 439
Hpy188III	TCNNGA	2 cut(s)	312, 509
Hpy8I	GTNNAC	2 cut(s)	11, 241
Hpy99I	CGWCG	1 cut(s)	525
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	4 cut(s)	15, 23, 181, 191
HpyCH4IV	ACGT	2 cut(s)	427, 523
HpyCH4V	TGCA	4 cut(s)	28, 224, 262, 278
HpyF3I	CTNAG	3 cut(s)	54, 436, 534
HpySE526I	ACGT	2 cut(s)	427, 523
Hsp92II	CATG	3 cut(s)	86, 327, 469
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	4 cut(s)	231, 297, 358, 461
MaeI	CTAG	3 cut(s)	296, 509, 577
MaeII	ACGT	2 cut(s)	427, 523
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	4 cut(s)	36, 152, 389, 512
MfeI	CAATTG	2 cut(s)	112, 273
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	4 cut(s)	112, 273, 353, 513
MnlI	CCTC	6 cut(s)	331, 373, 400, 409, 445, 541
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	2 cut(s)	257, 483
MslI	CAYNNNNRTG	1 cut(s)	257
MunI	CAATTG	2 cut(s)	112, 273
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	3 cut(s)	86, 327, 469
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	478
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	257, 483
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	478
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	8 cut(s)	60, 156, 174, 214, 232, 393, 430, 526
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	112, 273, 353, 513
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	3 cut(s)	296, 509, 577
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	4 cut(s)	15, 23, 181, 191
TaiI	ACGT	2 cut(s)	430, 526
TaqI	TCGA	3 cut(s)	174, 397, 546
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	112, 273, 353, 513
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	257, 483
Tru9I	TTAA	2 cut(s)	257, 483
TscAI	CASTG	3 cut(s)	26, 186, 196
TseFI	GTSAC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	3 cut(s)	26, 186, 196
Van91I	CCANNNNNTGG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	513
XbaI	TCTAGA	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	3 cut(s)	296, 509, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.