Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

43301565 .. 43304126

Gene Structure 2562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCAAGTTCACAGTTCCACTGTCTGCAATCAGTCAGAGTTTCTTCCCCGTGTCGGCTTTTCATATCTACTTCATTTAATCATGGTAGAGTGAGTTTCCAAAGAAAGAGCAATTGTCTTGTTTATGCTTCCACCAACAACTTCAACAGCGATCTTCAATCAAAGGTTGAAACAGTGTTAGACAGTGTAAAATGGGATGACAAAGGTTTAGCGGTTGCAATAGCTCAAAATGTTGACACAGGAGCCATCTTAATGCAAGGTTTTGCAAACAGGGAAGCAGTGGCTACAACAATCTCCTCCCGGAAGGCCACATTCTACAGTCGGTCGCGATCAACACTCTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTCCATGACATCTTCCTTGATTGTGATCGAGACTCTATAATATACCTAGGGAAGCCTGATGGCCCTACTTGCCACACGGGAGCAGAGACTTGCTATTACACCTCGTTGATTGATTTGTTAGAAGATCAGCAGAGCGGAGGAGATAAATTCCCTTTGACCACTCTGAACTCTTTAGAATCTACAATTGCAAAGCGAAAAGGAGAACTAGAAGTCCCACAATCTGGAAAGCCCTCATGGACGAGACGACTACTACTTGATGAGAAATTGTTGTGTTCAAAAATCAGGGAAGAGGCAGATGAGCTATGTCGAACATTAGAGGAGAATGAGGATAAGTCACGTACTGCCTCAGAGATGGGAGATGTGCTCTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATGGAAGATGTTCTAGAAATTCTACGACGTAGATTTTCTCAGTCGGGTATCGAGGAAAAGAGAAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

287

Amino Acids

32.23

Weight (kDa)

6.54

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	85 - 158	9.2e-28	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	198 - 271	1.8e-11	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	510
AccII	CGCG	1 cut(s)	328
AciI	CCGC	2 cut(s)	212, 510
AcsI	RAATTY	2 cut(s)	521, 798
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	2 cut(s)	54, 596
AgsI	TTSAA	4 cut(s)	145, 158, 170, 651
AloI	GAACNNNNNNTCC	2 cut(s)	570, 602
AluBI	AGCT	2 cut(s)	224, 676
AluI	AGCT	2 cut(s)	224, 676
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	4 cut(s)	347, 399, 455, 610
AoxI	GGCC	3 cut(s)	306, 436, 762
ApoI	RAATTY	2 cut(s)	521, 798
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	789
AspA2I	CCTAGG	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	437, 763
AsuC2I	CCSGG	1 cut(s)	301
AvrII	CCTAGG	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	741
BccI	CCATC	4 cut(s)	254, 428, 721, 767
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	4 cut(s)	347, 399, 455, 610
BfaI	CTAG	4 cut(s)	422, 581, 794, 862
BfmI	CTRYAG	1 cut(s)	316
BlnI	CCTAGG	1 cut(s)	421
Bme1390I	CCNGG	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	437, 763
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	723, 755
BpuMI	CCSGG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	713
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	421, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 596
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	421, 750
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	54, 596
BseMII	CTCAG	2 cut(s)	735, 833
BseRI	GAGGAG	3 cut(s)	286, 528, 707
Bsh1236I	CGCG	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	326
BshFI	GGCC	3 cut(s)	308, 438, 764
BsiEI	CGRYCG	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	741
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	572
BslI	CCNNNNNNNGG	2 cut(s)	54, 596
BsmAI	GTCTC	4 cut(s)	347, 399, 455, 610
BsmBI	CGTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	3 cut(s)	308, 438, 764
Bso31I	GGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	4 cut(s)	151, 329, 400, 499
Bsp19I	CCATGG	1 cut(s)	750
Bsp68I	TCGCGA	1 cut(s)	328
BspACI	CCGC	2 cut(s)	212, 510
BspANI	GGCC	3 cut(s)	308, 438, 764
BspCNI	CTCAG	2 cut(s)	734, 832
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	510
BssECI	CCNNGG	2 cut(s)	421, 750
BssMI	GATC	4 cut(s)	151, 329, 400, 499
BssT1I	CCWWGG	2 cut(s)	421, 750
Bst4CI	ACNGT	5 cut(s)	15, 23, 175, 185, 320
Bst6I	CTCTTC	1 cut(s)	657
BstBAI	YACGTR	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	2 cut(s)	721, 819
BstDSI	CCRYGG	1 cut(s)	750
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	4 cut(s)	154, 332, 403, 502
BstMAI	GTCTC	4 cut(s)	347, 399, 455, 610
BstMBI	GATC	4 cut(s)	151, 329, 400, 499
BstMCI	CGRYCG	1 cut(s)	326
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	308, 438, 764
BtgI	CCRYGG	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	4 cut(s)	19, 180, 190, 285
BtuMI	TCGCGA	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	762
Cfr13I	GGNCC	2 cut(s)	437, 763
Csp6I	GTAC	1 cut(s)	714
CviAII	CATG	4 cut(s)	83, 380, 609, 751
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	2 cut(s)	721, 819
DpnI	GATC	4 cut(s)	153, 331, 402, 501
DpnII	GATC	4 cut(s)	151, 329, 400, 499
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	2 cut(s)	421, 750
Eco31I	GGTCTC	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	421, 750
ErhI	CCWWGG	2 cut(s)	421, 750
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	4 cut(s)	86, 383, 612, 754
FaiI	YATR	9 cut(s)	65, 84, 126, 381, 413, 418, 610, 679, 752
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	4 cut(s)	82, 379, 608, 750
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	4 cut(s)	422, 581, 794, 862
HaeIII	GGCC	3 cut(s)	308, 438, 764
HapII	CCGG	1 cut(s)	301
Hin1II	CATG	4 cut(s)	86, 383, 612, 754
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	407, 551
HpaII	CCGG	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	11, 235
Hpy188I	TCNGA	3 cut(s)	38, 540, 724
Hpy188III	TCNNGA	5 cut(s)	327, 340, 404, 597, 794
Hpy8I	GTNNAC	2 cut(s)	11, 235
Hpy99I	CGWCG	1 cut(s)	810
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	5 cut(s)	15, 23, 175, 185, 320
HpyCH4IV	ACGT	2 cut(s)	712, 808
HpyCH4V	TGCA	5 cut(s)	28, 218, 256, 266, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	2 cut(s)	721, 819
HpySE526I	ACGT	2 cut(s)	712, 808
Hsp92II	CATG	4 cut(s)	86, 383, 612, 754
Kzo9I	GATC	4 cut(s)	151, 329, 400, 499
LmnI	GCTCC	2 cut(s)	242, 455
LpnPI	CCDG	8 cut(s)	225, 256, 314, 325, 444, 582, 643, 746
MaeI	CTAG	4 cut(s)	422, 581, 794, 862
MaeII	ACGT	2 cut(s)	712, 808
MaeIII	GTNAC	1 cut(s)	708
MalI	GATC	4 cut(s)	153, 331, 402, 501
MbiI	CCGCTC	1 cut(s)	510
MboI	GATC	4 cut(s)	151, 329, 400, 499
MboII	GAAGA	6 cut(s)	36, 146, 379, 509, 674, 797
MfeI	CAATTG	2 cut(s)	112, 558
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	6 cut(s)	112, 364, 521, 558, 638, 798
MlyI	GAGTC	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	4 cut(s)	78, 251, 372, 768
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	301
MunI	CAATTG	2 cut(s)	112, 558
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	4 cut(s)	151, 329, 400, 499
NlaIII	CATG	4 cut(s)	86, 383, 612, 754
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	708
NruI	TCGCGA	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	1 cut(s)	551
PflMI	CCANNNNNTGG	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	299
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Ppu21I	YACGTR	1 cut(s)	713
PshBI	ATTAAT	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	437, 763
RruI	TCGCGA	1 cut(s)	328
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	4 cut(s)	78, 251, 372, 768
Sau3AI	GATC	4 cut(s)	151, 329, 400, 499
Sau96I	GGNCC	2 cut(s)	437, 763
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	741
SfcI	CTRYAG	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	6 cut(s)	112, 364, 521, 558, 638, 798
SsiI	CCGC	2 cut(s)	212, 510
SspMI	CTAG	4 cut(s)	422, 581, 794, 862
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	421, 750
TaaI	ACNGT	5 cut(s)	15, 23, 175, 185, 320
TaiI	ACGT	2 cut(s)	715, 811
TaqI	TCGA	3 cut(s)	403, 682, 831
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	6 cut(s)	112, 364, 521, 558, 638, 798
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	4 cut(s)	78, 251, 372, 768
Tru9I	TTAA	4 cut(s)	78, 251, 372, 768
TscAI	CASTG	4 cut(s)	26, 180, 190, 285
TseFI	GTSAC	1 cut(s)	708
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	3 cut(s)	52, 63, 358
TspRI	CASTG	4 cut(s)	26, 180, 190, 285
Van91I	CCANNNNNTGG	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	2 cut(s)	521, 798
XbaI	TCTAGA	1 cut(s)	793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XmaJI	CCTAGG	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	4 cut(s)	422, 581, 794, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.