Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Forward (+)

6618649 .. 6624955

Gene Structure 6307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G095300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCGATTTCACATTTACACTGTCTGCAATCTGTGAGAGTTTCTTTCCCCTGCCGTCCTTCCGTTTCTAACAATTATTGTTATGGTAGAGACAATTTCACGAGAAAGAGCAGTTCCCTTGTCTATGCCTCCACCAACAACTTGGACAGGGACCTTCATCTTCAATCAAAGGTTGAAACAGTGTTAGATAGTGTAAAATGGGATAACAGAGGTTTGGCGGTTGCCATAGCTCAAAATGTTGACACGGGAGCCATCTTGATGCAAGGCTTTGCGAACAGGGAAGCAGTGGCTACAACAGTTTCCTCACGGAAAGCAACATTCTACAGTCGCTCACGTTCAATGTTGTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTCCATGACATCTTCCTTGATTGTGATCGAGACTCTATAATTTACCTCGGGAAGCCTGATGGACCTACTTGCCACACAGGATCAGAGACTTGCTATTACACCCCAGTGTTTGATTTGTTAGAAAATCAACAGGACAAAGAAGATAAATTAGCGTTGACCACTTTGTACTCATTGGAGTCTACAATTGCCCAGCGAAAAGGAGAATTAGAAGTCCCACAGAGTGGAAAGCCCTCATGGACCCGACGACTACTACTTGATGAGAAATTGTTGTGTTCAAAAATAAGGGAAGAGGCAGATGAGCTATGCCGAACACTAGAGGACAATGAAGATAAGCCACGAGCTGCCTCAGAGATGGCTGATGTGCTTTATCATGCCATGGTTCTGCTGGCCCTTAAAGATGTGAAAATGGAAGAGGTTCTAGACATTCTTCGACGTAGATTTTCTCAGTCAGGTATCGAGGAGAAGAGAAGTCGCAACTCGCAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

290

Amino Acids

32.79

Weight (kDa)

6.12

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	560
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	469
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	4 cut(s)	164, 176, 339, 657
AleI	CACNNNNGTG	1 cut(s)	485
AluBI	AGCT	3 cut(s)	230, 682, 722
AluI	AGCT	3 cut(s)	230, 682, 722
Alw26I	GTCTC	4 cut(s)	84, 353, 405, 461
AlwI	GGATC	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	768
ApeKI	GCWGC	1 cut(s)	722
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	795
AspS9I	GGNCC	4 cut(s)	151, 443, 618, 769
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	3 cut(s)	151, 443, 618
BauI	CACGAG	2 cut(s)	100, 717
BbvI	GCAGC	1 cut(s)	709
BccI	CCATC	3 cut(s)	260, 434, 727
BceAI	ACGGC	1 cut(s)	39
BcoDI	GTCTC	4 cut(s)	84, 353, 405, 461
BfaI	CTAG	3 cut(s)	695, 800, 868
BfmI	CTRYAG	1 cut(s)	322
BisI	GCNGC	1 cut(s)	723
BlsI	GCNGC	1 cut(s)	724
Bme18I	GGWCC	3 cut(s)	151, 443, 618
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	4 cut(s)	151, 443, 618, 769
BmiI	GGNNCC	3 cut(s)	152, 250, 620
BmrI	ACTGGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	427, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	485
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	427, 756
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMII	CTCAG	2 cut(s)	741, 839
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	854
BseXI	GCAGC	1 cut(s)	709
BseYI	CCCAGC	1 cut(s)	570
BshFI	GGCC	1 cut(s)	770
BsiHKCI	CYCGRG	1 cut(s)	428
BslFI	GGGAC	2 cut(s)	164, 578
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	4 cut(s)	84, 353, 405, 461
BsmFI	GGGAC	2 cut(s)	164, 578
BsnI	GGCC	1 cut(s)	770
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	428
Bsp143I	GATC	2 cut(s)	406, 461
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	770
BspCNI	CTCAG	2 cut(s)	740, 838
BspLI	GGNNCC	3 cut(s)	152, 250, 620
BspPI	GGATC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	427, 756
BssMI	GATC	2 cut(s)	406, 461
BssSI	CACGAG	2 cut(s)	100, 717
BssT1I	CCWWGG	1 cut(s)	756
Bst2BI	CACGAG	2 cut(s)	100, 717
Bst4CI	ACNGT	4 cut(s)	23, 181, 298, 326
Bst6I	CTCTTC	3 cut(s)	663, 786, 839
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	2 cut(s)	727, 825
BstDSI	CCRYGG	1 cut(s)	756
BstKTI	GATC	2 cut(s)	409, 464
BstMAI	GTCTC	4 cut(s)	84, 353, 405, 461
BstMBI	GATC	2 cut(s)	406, 461
BstSFI	CTRYAG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	709
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	770
BtgI	CCRYGG	1 cut(s)	756
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	4 cut(s)	19, 186, 291, 492
Cac8I	GCNNGC	1 cut(s)	768
Cfr13I	GGNCC	4 cut(s)	151, 443, 618, 769
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	386, 615, 752, 757
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	2 cut(s)	727, 825
DpnI	GATC	2 cut(s)	408, 463
DpnII	GATC	2 cut(s)	406, 461
DraIII	CACNNNGTG	1 cut(s)	602
Eam1104I	CTCTTC	3 cut(s)	663, 786, 839
EarI	CTCTTC	3 cut(s)	663, 786, 839
Eco130I	CCWWGG	1 cut(s)	756
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	3 cut(s)	151, 443, 618
Eco88I	CYCGRG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	4 cut(s)	389, 618, 755, 760
FaiI	YATR	9 cut(s)	84, 126, 227, 387, 419, 616, 685, 753, 758
FaqI	GGGAC	2 cut(s)	164, 578
FatI	CATG	4 cut(s)	385, 614, 751, 756
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	1 cut(s)	723
Fsp4HI	GCNGC	1 cut(s)	723
FspBI	CTAG	3 cut(s)	695, 800, 868
GluI	GCNGC	1 cut(s)	723
GsaI	CCCAGC	1 cut(s)	574
HaeIII	GGCC	1 cut(s)	770
Hin1II	CATG	4 cut(s)	389, 618, 755, 760
HincII	GTYRAC	2 cut(s)	241, 537
HindII	GTYRAC	2 cut(s)	241, 537
HinfI	GANTC	2 cut(s)	413, 557
Hpy166II	GTNNAC	4 cut(s)	241, 348, 537, 561
Hpy188I	TCNGA	2 cut(s)	466, 730
Hpy188III	TCNNGA	5 cut(s)	100, 256, 410, 430, 800
Hpy8I	GTNNAC	4 cut(s)	241, 348, 537, 561
Hpy99I	CGWCG	2 cut(s)	627, 816
HpyAV	CCTTC	2 cut(s)	69, 164
HpyCH4III	ACNGT	4 cut(s)	23, 181, 298, 326
HpyCH4IV	ACGT	2 cut(s)	334, 814
HpyCH4V	TGCA	2 cut(s)	28, 262
HpyF3I	CTNAG	2 cut(s)	727, 825
HpySE526I	ACGT	2 cut(s)	334, 814
Hsp92II	CATG	4 cut(s)	389, 618, 755, 760
Kzo9I	GATC	2 cut(s)	406, 461
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	709
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	3 cut(s)	695, 800, 868
MaeII	ACGT	2 cut(s)	334, 814
MalI	GATC	2 cut(s)	408, 463
MboI	GATC	2 cut(s)	406, 461
MboII	GAAGA	8 cut(s)	152, 385, 533, 680, 719, 800, 803, 856
MfeI	CAATTG	1 cut(s)	564
MluCI	AATT	8 cut(s)	73, 94, 370, 420, 527, 564, 584, 644
MlyI	GAGTC	2 cut(s)	407, 566
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	2 cut(s)	378, 774
MslI	CAYNNNNRTG	2 cut(s)	257, 485
MunI	CAATTG	1 cut(s)	564
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	2 cut(s)	406, 461
NlaIII	CATG	4 cut(s)	389, 618, 755, 760
NlaIV	GGNNCC	3 cut(s)	152, 250, 620
OliI	CACNNNNGTG	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	795
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	724
PleI	GAGTC	2 cut(s)	407, 565
PpsI	GAGTC	2 cut(s)	407, 565
PpuMI	RGGWCCY	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	570
PspN4I	GGNNCC	3 cut(s)	152, 250, 620
PspPI	GGNCC	4 cut(s)	151, 443, 618, 769
PspPPI	RGGWCCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	257, 485
SaqAI	TTAA	2 cut(s)	378, 774
SatI	GCNGC	1 cut(s)	723
Sau3AI	GATC	2 cut(s)	406, 461
Sau96I	GGNCC	4 cut(s)	151, 443, 618, 769
SchI	GAGTC	2 cut(s)	407, 566
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	3 cut(s)	151, 443, 618
SmiMI	CAYNNNNRTG	2 cut(s)	257, 485
Sse9I	AATT	8 cut(s)	73, 94, 370, 420, 527, 564, 584, 644
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	3 cut(s)	695, 800, 868
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	4 cut(s)	23, 181, 298, 326
TaiI	ACGT	2 cut(s)	337, 817
TaqI	TCGA	3 cut(s)	409, 811, 837
TasI	AATT	8 cut(s)	73, 94, 370, 420, 527, 564, 584, 644
TatI	WGTACW	1 cut(s)	546
Tru1I	TTAA	2 cut(s)	378, 774
Tru9I	TTAA	2 cut(s)	378, 774
TscAI	CASTG	4 cut(s)	26, 186, 291, 492
TseI	GCWGC	1 cut(s)	722
TspDTI	ATGAA	3 cut(s)	146, 364, 720
TspGWI	ACGGA	2 cut(s)	52, 322
TspRI	CASTG	4 cut(s)	26, 186, 291, 492
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	3 cut(s)	151, 443, 618
VspI	ATTAAT	1 cut(s)	378
XbaI	TCTAGA	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 763
XmiI	GTMKAC	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	3 cut(s)	695, 800, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.