Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

8956960 .. 8958217

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1104300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGACAGATACTGTAGTGCCAATAGATGTTGAAACAGTGTTAGATAGTGTAAAATGGGATGACAAAGGTTTAGCAGTGGCCATAGCTCAAAACGTTGACACAGAAGCCATCTTGATGCAAGGCTTTGCTAACAGGGAGGCAGTGGCCACGACAATTTCCTCACGGAAGGCTACATTCTACAGTCGGTCGCAATCAACCTTGTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTCCAAGAAATCTTCCTTGATTGTGACCGAGACTCTATAATATACCTTGGGAAGCCTGATGGACCTACCTGCCACACAGGGTCCGAGACGTGCTATTGCACCCCAGTGCTTGATTTGTTGGAATATCGACAGGTTTTCAACATTGAATCACGAAACGAAGAATTAGAAGTTTTAGAGAGTGGAAAGCCCTCGTGGACTCGCCGTCTACTATCTGATGAGAAGTTGAAAGAGGCGGACGAGCTACGCCAAACACTGGAGGAGAATGAAGATAGGTTGTGTGCTGCCTCGGAGATGGCATATGTGCTTTATCATGGCATGGCTCTGCTAGGCAGTAAAGGCGTGAAAATGGAAGAGGTTTTGGAAATTCTTCGACGTAGGTTTTCCCAATCGGGTATCGAGGAAAAGAGAAACCGCAAGTCACAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

222

Amino Acids

25.04

Weight (kDa)

4.83

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	39 - 111	3.8e-27	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	140 - 205	9.3e-06	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	442
AciI	CCGC	2 cut(s)	470, 649
AclI	AACGTT	1 cut(s)	93
AcoI	YGGCCR	2 cut(s)	78, 144
AcsI	RAATTY	1 cut(s)	600
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	4 cut(s)	32, 376, 383, 463
AhdI	GACNNNNNGTC	1 cut(s)	438
AjiI	CACGTC	1 cut(s)	327
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	86, 478
AluI	AGCT	2 cut(s)	86, 478
Alw26I	GTCTC	3 cut(s)	209, 261, 317
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	78, 144
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	600
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	299, 318
AvaII	GGWCC	2 cut(s)	299, 318
BaeI	ACNNNNGTAYC	1 cut(s)	33
BalI	TGGCCA	2 cut(s)	80, 146
BauI	CACGAG	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	3 cut(s)	116, 290, 523
BceAI	ACGGC	1 cut(s)	423
BcoDI	GTCTC	3 cut(s)	209, 261, 317
BfaI	CTAG	2 cut(s)	563, 664
BfmI	CTRYAG	2 cut(s)	12, 178
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme18I	GGWCC	2 cut(s)	299, 318
BmeRI	GACNNNNNGTC	1 cut(s)	438
BmgBI	CACGTC	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	299, 318
BmiI	GGNNCC	1 cut(s)	319
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	283, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	2 cut(s)	341, 495
BseDI	CCNNGG	2 cut(s)	283, 522
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseNI	ACTGG	2 cut(s)	341, 495
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	1 cut(s)	505
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	80, 146
BsiEI	CGRYCG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	3 cut(s)	209, 261, 317
BsmBI	CGTCTC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	80, 146
Bso31I	GGTCTC	1 cut(s)	209
BspACI	CCGC	2 cut(s)	470, 649
BspANI	GGCC	2 cut(s)	80, 146
BspLI	GGNNCC	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	341, 495
BssECI	CCNNGG	2 cut(s)	283, 522
BssSI	CACGAG	1 cut(s)	427
BssT1I	CCWWGG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	427
Bst4CI	ACNGT	3 cut(s)	13, 37, 182
Bst6I	CTCTTC	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	64
BstMAI	GTCTC	3 cut(s)	209, 261, 317
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	573
BstSFI	CTRYAG	2 cut(s)	12, 178
BstV1I	GCAGC	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	80, 146
BtrI	CACGTC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	64
BtsI	GCAGTG	2 cut(s)	81, 147
BtsIMutI	CAGTG	5 cut(s)	42, 81, 147, 348, 488
BveI	ACCTGC	1 cut(s)	314
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	299, 318
CviAII	CATG	2 cut(s)	548, 553
DriI	GACNNNNNGTC	1 cut(s)	438
EaeI	YGGCCR	2 cut(s)	78, 144
Eam1104I	CTCTTC	1 cut(s)	582
Eam1105I	GACNNNNNGTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	299, 318
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	551, 556
FaiI	YATR	7 cut(s)	83, 275, 280, 535, 537, 549, 554
FatI	CATG	2 cut(s)	547, 552
FauNDI	CATATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	2 cut(s)	563, 664
GluI	GCNGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	2 cut(s)	80, 146
Hin1II	CATG	2 cut(s)	551, 556
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	269, 383, 433
Hpy166II	GTNNAC	4 cut(s)	97, 204, 432, 443
Hpy188I	TCNGA	3 cut(s)	322, 451, 526
Hpy188III	TCNNGA	2 cut(s)	112, 387
Hpy8I	GTNNAC	4 cut(s)	97, 204, 432, 443
Hpy99I	CGWCG	1 cut(s)	612
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	3 cut(s)	13, 37, 182
HpyCH4IV	ACGT	3 cut(s)	93, 326, 610
HpyCH4V	TGCA	2 cut(s)	118, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	573
HpySE526I	ACGT	3 cut(s)	93, 326, 610
Hsp92II	CATG	2 cut(s)	551, 556
LpnPI	CCDG	7 cut(s)	118, 300, 306, 319, 353, 354, 476
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	563, 664
MaeII	ACGT	3 cut(s)	93, 326, 610
MaeIII	GTNAC	2 cut(s)	260, 654
MboII	GAAGA	5 cut(s)	241, 407, 515, 596, 599
MlsI	TGGCCA	2 cut(s)	80, 146
MluCI	AATT	4 cut(s)	153, 226, 398, 600
MluNI	TGGCCA	2 cut(s)	80, 146
MlyI	GAGTC	2 cut(s)	263, 427
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	9 cut(s)	130, 169, 229, 436, 460, 487, 532, 583, 628
Mox20I	TGGCCA	2 cut(s)	80, 146
MroXI	GAANNNNTTC	1 cut(s)	603
MscI	TGGCCA	2 cut(s)	80, 146
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	2 cut(s)	113, 341
Msp20I	TGGCCA	2 cut(s)	80, 146
MwoI	GCNNNNNNNGC	1 cut(s)	573
NdeI	CATATG	1 cut(s)	535
NlaIII	CATG	2 cut(s)	551, 556
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	260, 654
OliI	CACNNNNGTG	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	2 cut(s)	263, 427
PpsI	GAGTC	2 cut(s)	263, 427
PshBI	ATTAAT	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	2 cut(s)	299, 318
PstNI	CAGNNNCTG	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	113, 341
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	519
Sau96I	GGNCC	2 cut(s)	299, 318
SchI	GAGTC	2 cut(s)	263, 427
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	2 cut(s)	12, 178
SinI	GGWCC	2 cut(s)	299, 318
SmiMI	CAYNNNNRTG	2 cut(s)	113, 341
Sse9I	AATT	4 cut(s)	153, 226, 398, 600
SsiI	CCGC	2 cut(s)	470, 649
SspMI	CTAG	2 cut(s)	563, 664
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	13, 37, 182
TaiI	ACGT	3 cut(s)	96, 329, 613
TaqI	TCGA	3 cut(s)	364, 607, 633
TaqII	GACCGA	2 cut(s)	174, 279
TasI	AATT	4 cut(s)	153, 226, 398, 600
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	5 cut(s)	42, 81, 147, 348, 495
TseFI	GTSAC	2 cut(s)	260, 654
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	260, 654
TspDTI	ATGAA	2 cut(s)	220, 516
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	5 cut(s)	42, 81, 147, 348, 495
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	299, 318
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	2 cut(s)	563, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.