Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Forward (+)

54383645 .. 54385023

Gene Structure 1379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCCCTACTTAATTGCCACACAGGAGCAGAGACTTGCTATTACACCTCGGTGATTGATTTGTTACCTGATCAACAGATTGGAGGAGATAAATTCCGGCTGACCACTCTGAACTCCTTAGAATCTACAATTGCAAAGCGAAAAGGAGAACTAGAAGTCCCACAAACTGGAAAGCCCTCGTGGACTAGACGACTACTACTTGTTGTGTTCAAAAATCAGTTGAGAGTTTTCTTTTCTCACTCTAGGGAAGAGGCAGATGAGCTATGTCTAACACTAGAGGAGAATGAGGATAAGTCATGTACTGCCTCAGAGATGGGAGATGTGCTTTATTATTCCATGGTTCTGCTGGCCCTTACAGATGGAAAAATGGAAGATGTTCTAGAAATTCTACGACGTAGATTTTCTCAGTCAGATAGCTGCATTGATGCTTCTAGAATCAAATTCCCTGGTCGTCATCCAGTTCTCAAAGTCCCCAGTTTCTATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

162

Amino Acids

18.46

Weight (kDa)

5.47

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-PH	PF01503	81 - 133	5.6e-06	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AcsI	RAATTY	3 cut(s)	92, 384, 440
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	445
AleI	CACNNNNGTG	1 cut(s)	50
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	2 cut(s)	262, 417
AluI	AGCT	2 cut(s)	262, 417
Alw26I	GTCTC	1 cut(s)	26
AoxI	GGCC	2 cut(s)	3, 348
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	3 cut(s)	92, 384, 440
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	4, 349
AsuHPI	GGTGA	1 cut(s)	64
BauI	CACGAG	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	2 cut(s)	307, 353
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	6 cut(s)	152, 186, 243, 275, 380, 432
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	4, 349
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	468
BsaJI	CCNNGG	3 cut(s)	48, 336, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	3 cut(s)	172, 458, 474
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	3 cut(s)	48, 336, 445
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	321, 419
BseNI	ACTGG	3 cut(s)	172, 458, 474
BseRI	GAGGAG	2 cut(s)	99, 293
BseXI	GCAGC	1 cut(s)	404
BshFI	GGCC	2 cut(s)	5, 350
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	2 cut(s)	143, 455
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	143, 455
BsnI	GGCC	2 cut(s)	5, 350
Bsp143I	GATC	1 cut(s)	70
Bsp19I	CCATGG	1 cut(s)	336
BspANI	GGCC	2 cut(s)	5, 350
BspCNI	CTCAG	2 cut(s)	320, 418
BsrI	ACTGG	3 cut(s)	172, 458, 474
BssECI	CCNNGG	3 cut(s)	48, 336, 445
BssMI	GATC	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	118, 307, 405
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	5, 350
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	4, 349
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	2 cut(s)	297, 337
CviJI	RGCY	6 cut(s)	5, 100, 175, 262, 350, 417
CviKI_1	RGCY	6 cut(s)	5, 100, 175, 262, 350, 417
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	3 cut(s)	118, 307, 405
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	300, 340
FaiI	YATR	4 cut(s)	265, 298, 338, 483
FaqI	GGGAC	2 cut(s)	143, 455
FatI	CATG	2 cut(s)	296, 336
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	418
FokI	GGATG	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	6 cut(s)	152, 186, 243, 275, 380, 432
GluI	GCNGC	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	5, 350
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	2 cut(s)	300, 340
HinfI	GANTC	2 cut(s)	122, 435
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	3 cut(s)	111, 310, 412
Hpy188III	TCNNGA	2 cut(s)	380, 432
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	1 cut(s)	396
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	2 cut(s)	134, 420
HpyF3I	CTNAG	3 cut(s)	118, 307, 405
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	2 cut(s)	300, 340
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	8 cut(s)	9, 81, 110, 153, 332, 432, 459, 471
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	6 cut(s)	152, 186, 243, 275, 380, 432
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	260, 383
MfeI	CAATTG	1 cut(s)	129
MluCI	AATT	5 cut(s)	13, 92, 129, 384, 440
MnlI	CCTC	7 cut(s)	58, 77, 187, 244, 271, 280, 316
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	50
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	447
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	300, 340
OliI	CACNNNNGTG	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	122, 435
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	4, 349
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	4, 349
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	5 cut(s)	50, 70, 264, 397, 419
SfaNI	GCATC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	5 cut(s)	13, 92, 129, 384, 440
SspMI	CTAG	6 cut(s)	152, 186, 243, 275, 380, 432
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	336
TaiI	ACGT	1 cut(s)	397
TasI	AATT	5 cut(s)	13, 92, 129, 384, 440
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	122, 435
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseI	GCWGC	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	167
XapI	RAATTY	3 cut(s)	92, 384, 440
XbaI	TCTAGA	2 cut(s)	379, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	6 cut(s)	152, 186, 243, 275, 380, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.