Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Forward (+)

5379053 .. 5382609

Gene Structure 3557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09080.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCAAGTTCACAGTTCCACTGTCTGCAATCAGTCAGAGTTTCTTCCCCGTCTCGGCCTTTCATATCTACTTCATTTAATCATGGTAGAGTGAATTTCAAAAGAAAGAGCAATTCTCTTGTTTATGCTTCCACCAAGAACTTAGACCATCATCTTCAATCAAAGGTCGAAACGGTGTTAGACAGTGTAAAATGGGATGACAAAGGTTTAGCGGTTGCCATAGCTCAAAATGTTGACACAGGAGCCATCTTGATGCAAGGGTTTGCAAACAGGGAAGCAGTGGCTACAACAATCTCCTCCCGTAAGGCCACATTCTACAGTCGGTCGCGATTAACGCTGTGGACAAAGGGAGAGACCTCCAGTAATTTCATTAATGTCCATGACATCTTCCTTGATTGTGATCGGGACTCTATAATATACCTAGGGAAGCCTGATGGCCCGACTTGCCACACAGGAGCAGAGACTTGCTATTACACCTCAGTGATTGATTTGTTAGAAGATCAGCAGAGTAGAGGAGATAAATTCCCATTGACCACTCTGAACTCCTTAGAATCTACAATTGCAAAGCGAAAAGGAGAACTTGAAGTCCCACAAACTGGAAAGCCCTCGTGGACTAGACGACTACTACTTGACAAGAAGTTGTTGTGTTCAAAAATCAGGGAAGAGGCAGATGAGCTATGTCGAACATTAGAGGAGAATGAGGATAAGTCGCGTACTGCCTCAGAGATGGGAGATGTGCTTTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATGGAAGATGTTCTAGAAATTTTACGTCATAGATTTTCTCAGTCAGGTATCGAGGAAAAGAGAAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

288

Amino Acids

32.34

Weight (kDa)

8.45

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	85 - 158	3.2e-27	Phosphoribosyl-AMP cyclohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccII	CGCG	2 cut(s)	328, 712
AciI	CCGC	1 cut(s)	212
AcsI	RAATTY	3 cut(s)	94, 521, 798
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	2 cut(s)	54, 596
AgsI	TTSAA	4 cut(s)	100, 158, 584, 651
AleI	CACNNNNGTG	1 cut(s)	479
AloI	GAACNNNNNNTCC	2 cut(s)	570, 602
AluBI	AGCT	2 cut(s)	224, 676
AluI	AGCT	2 cut(s)	224, 676
Alw26I	GTCTC	3 cut(s)	57, 347, 455
AoxI	GGCC	4 cut(s)	56, 306, 436, 762
ApoI	RAATTY	3 cut(s)	94, 521, 798
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	789
AspA2I	CCTAGG	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	437, 763
AvrII	CCTAGG	1 cut(s)	421
BauI	CACGAG	1 cut(s)	607
BccI	CCATC	5 cut(s)	156, 254, 428, 721, 767
BcoDI	GTCTC	3 cut(s)	57, 347, 455
BfaI	CTAG	4 cut(s)	422, 615, 794, 862
BfmI	CTRYAG	1 cut(s)	316
BlnI	CCTAGG	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	437, 763
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpmI	CTGGAG	1 cut(s)	343
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	421, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 596
Bse1I	ACTGG	2 cut(s)	360, 601
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	421, 750
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	54, 596
BseMII	CTCAG	3 cut(s)	492, 735, 833
BseNI	ACTGG	2 cut(s)	360, 601
BseRI	GAGGAG	3 cut(s)	286, 528, 707
Bsh1236I	CGCG	2 cut(s)	328, 712
Bsh1285I	CGRYCG	1 cut(s)	326
BshFI	GGCC	4 cut(s)	58, 308, 438, 764
BsiEI	CGRYCG	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	419, 572
BslI	CCNNNNNNNGG	2 cut(s)	54, 596
BsmAI	GTCTC	3 cut(s)	57, 347, 455
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	419, 572
BsnI	GGCC	4 cut(s)	58, 308, 438, 764
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	400, 499
Bsp19I	CCATGG	1 cut(s)	750
Bsp68I	TCGCGA	1 cut(s)	328
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	4 cut(s)	58, 308, 438, 764
BspCNI	CTCAG	3 cut(s)	491, 734, 832
BspFNI	CGCG	2 cut(s)	328, 712
BspLI	GGNNCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	360, 601
BssECI	CCNNGG	2 cut(s)	421, 750
BssMI	GATC	2 cut(s)	400, 499
BssSI	CACGAG	1 cut(s)	607
BssT1I	CCWWGG	2 cut(s)	421, 750
Bst2BI	CACGAG	1 cut(s)	607
Bst4CI	ACNGT	5 cut(s)	15, 23, 175, 185, 320
Bst6I	CTCTTC	1 cut(s)	657
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	5 cut(s)	142, 478, 547, 721, 819
BstDSI	CCRYGG	1 cut(s)	750
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	2 cut(s)	328, 712
BstKTI	GATC	2 cut(s)	403, 502
BstMAI	GTCTC	3 cut(s)	57, 347, 455
BstMBI	GATC	2 cut(s)	400, 499
BstMCI	CGRYCG	1 cut(s)	326
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 444
BstSFI	CTRYAG	1 cut(s)	316
BstUI	CGCG	2 cut(s)	328, 712
BsuRI	GGCC	4 cut(s)	58, 308, 438, 764
BtgI	CCRYGG	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	4 cut(s)	19, 190, 285, 486
BtuMI	TCGCGA	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	762
Cfr13I	GGNCC	2 cut(s)	437, 763
Csp6I	GTAC	1 cut(s)	714
CviAII	CATG	3 cut(s)	83, 380, 751
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	5 cut(s)	142, 478, 547, 721, 819
DpnI	GATC	2 cut(s)	402, 501
DpnII	GATC	2 cut(s)	400, 499
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	2 cut(s)	421, 750
Eco31I	GGTCTC	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	421, 750
ErhI	CCWWGG	2 cut(s)	421, 750
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	3 cut(s)	86, 383, 754
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	2 cut(s)	419, 572
FatI	CATG	3 cut(s)	82, 379, 750
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	4 cut(s)	422, 615, 794, 862
GsuI	CTGGAG	1 cut(s)	343
HaeIII	GGCC	4 cut(s)	58, 308, 438, 764
Hin1II	CATG	3 cut(s)	86, 383, 754
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	407, 551
Hpy166II	GTNNAC	4 cut(s)	11, 235, 342, 612
Hpy188I	TCNGA	3 cut(s)	38, 540, 724
Hpy188III	TCNNGA	4 cut(s)	250, 327, 404, 794
Hpy8I	GTNNAC	4 cut(s)	11, 235, 342, 612
HpyCH4III	ACNGT	5 cut(s)	15, 23, 175, 185, 320
HpyCH4IV	ACGT	1 cut(s)	805
HpyCH4V	TGCA	4 cut(s)	28, 256, 266, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 444
HpyF3I	CTNAG	5 cut(s)	142, 478, 547, 721, 819
HpySE526I	ACGT	1 cut(s)	805
Hsp92II	CATG	3 cut(s)	86, 383, 754
Kzo9I	GATC	2 cut(s)	400, 499
LmnI	GCTCC	2 cut(s)	242, 455
LpnPI	CCDG	9 cut(s)	225, 256, 373, 438, 444, 582, 643, 746, 810
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	4 cut(s)	422, 615, 794, 862
MaeII	ACGT	1 cut(s)	805
MalI	GATC	2 cut(s)	402, 501
MboI	GATC	2 cut(s)	400, 499
MboII	GAAGA	6 cut(s)	36, 146, 379, 509, 674, 797
MfeI	CAATTG	1 cut(s)	558
MluCI	AATT	6 cut(s)	94, 112, 364, 521, 558, 798
MlyI	GAGTC	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	4 cut(s)	78, 332, 372, 768
MslI	CAYNNNNRTG	2 cut(s)	251, 479
MunI	CAATTG	1 cut(s)	558
MvnI	CGCG	2 cut(s)	328, 712
MwoI	GCNNNNNNNGC	2 cut(s)	334, 444
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	2 cut(s)	400, 499
NlaIII	CATG	3 cut(s)	86, 383, 754
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	328
OliI	CACNNNNGTG	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	1 cut(s)	551
PflMI	CCANNNNNTGG	1 cut(s)	596
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	437, 763
RruI	TCGCGA	1 cut(s)	328
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
RseI	CAYNNNNRTG	2 cut(s)	251, 479
SaqAI	TTAA	4 cut(s)	78, 332, 372, 768
Sau3AI	GATC	2 cut(s)	400, 499
Sau96I	GGNCC	2 cut(s)	437, 763
SchI	GAGTC	1 cut(s)	401
SetI	ASST	9 cut(s)	168, 208, 226, 359, 423, 479, 678, 808, 829
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	316
SmiMI	CAYNNNNRTG	2 cut(s)	251, 479
Sse9I	AATT	6 cut(s)	94, 112, 364, 521, 558, 798
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	4 cut(s)	422, 615, 794, 862
StyI	CCWWGG	2 cut(s)	421, 750
TaaI	ACNGT	5 cut(s)	15, 23, 175, 185, 320
TaiI	ACGT	1 cut(s)	808
TaqI	TCGA	3 cut(s)	168, 682, 831
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	6 cut(s)	94, 112, 364, 521, 558, 798
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	4 cut(s)	78, 332, 372, 768
Tru9I	TTAA	4 cut(s)	78, 332, 372, 768
TscAI	CASTG	4 cut(s)	26, 190, 285, 486
TspDTI	ATGAA	3 cut(s)	52, 63, 358
TspRI	CASTG	4 cut(s)	26, 190, 285, 486
Van91I	CCANNNNNTGG	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	3 cut(s)	94, 521, 798
XbaI	TCTAGA	1 cut(s)	793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XmaJI	CCTAGG	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	4 cut(s)	422, 615, 794, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.