Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

8975593 .. 8976509

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1104400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCATTGGGAGAGGCCTCCAATAATTTCATTAATGTCCAAGAAATCTTCCTTGATTGTGACCGAGACTCCCGAAAAGAAGAATTAGAAGTTCCAGAGAATGGAAAACCCTCGTGGACTCACCGTCTACTATCTGATGAGAAGTTGTTGTGCTCAAAAACTAGGGAAGAGGCAGACGAGTTATGCCAAACACTGGAGGAGAACGAAGATAGGCTACGTGTTGCCTCGGAGATGGCAGATGTGCTTTATCATGGCATGGCTCTGCTGGCCTGTAAAATCGTGAAAATGGAAGAGGTTTTGGAAATTCTTCGGCGTAGGTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

109

Amino Acids

12.56

Weight (kDa)

4.73

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-PH	PF01503	31 - 106	2.5e-13	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	101, 193
AccI	GTMKAC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	101, 193
AflIII	ACRYGT	1 cut(s)	217
AhdI	GACNNNNNGTC	1 cut(s)	123
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	60
AoxI	GGCC	2 cut(s)	15, 267
ApoI	RAATTY	1 cut(s)	303
AseI	ATTAAT	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	113
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
BauI	CACGAG	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	155
BccI	CCATC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	162, 325
BmeRI	GACNNNNNGTC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 193
Bse1I	ACTGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	101, 193
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	17, 269
BsiHKAI	GWGCWC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	101, 193
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	17, 269
Bsp1286I	GDGCHC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	17, 269
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	2 cut(s)	162, 285
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	17, 269
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	267
CviAII	CATG	2 cut(s)	251, 256
CviJI	RGCY	4 cut(s)	17, 214, 260, 269
CviKI_1	RGCY	4 cut(s)	17, 214, 260, 269
DriI	GACNNNNNGTC	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	162, 285
Eam1105I	GACNNNNNGTC	1 cut(s)	123
EarI	CTCTTC	2 cut(s)	162, 285
Eco147I	AGGCCT	1 cut(s)	17
FaeI	CATG	2 cut(s)	254, 259
FaiI	YATR	3 cut(s)	184, 252, 257
FatI	CATG	2 cut(s)	250, 255
FblI	GTMKAC	1 cut(s)	127
FspBI	CTAG	2 cut(s)	162, 325
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	17, 269
Hin1II	CATG	2 cut(s)	254, 259
HinfI	GANTC	2 cut(s)	68, 118
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	117, 128
Hpy188I	TCNGA	2 cut(s)	136, 229
Hpy188III	TCNNGA	3 cut(s)	72, 95, 280
Hpy8I	GTNNAC	2 cut(s)	117, 128
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	254, 259
LpnPI	CCDG	4 cut(s)	108, 179, 251, 283
MaeI	CTAG	2 cut(s)	162, 325
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	59
MboII	GAAGA	6 cut(s)	40, 92, 179, 218, 299, 302
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	3 cut(s)	25, 83, 303
MlyI	GAGTC	2 cut(s)	62, 112
MnlI	CCTC	7 cut(s)	7, 28, 121, 163, 190, 235, 286
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	254, 259
NmuCI	GTSAC	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	306
PflMI	CCANNNNNTGG	2 cut(s)	101, 193
PleI	GAGTC	2 cut(s)	62, 112
PpsI	GAGTC	2 cut(s)	62, 112
Ppu21I	YACGTR	1 cut(s)	218
PshBI	ATTAAT	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	33
SchI	GAGTC	2 cut(s)	62, 112
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	3 cut(s)	220, 297, 320
Sse9I	AATT	3 cut(s)	25, 83, 303
SseBI	AGGCCT	1 cut(s)	17
SspMI	CTAG	2 cut(s)	162, 325
StuI	AGGCCT	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	220
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	3 cut(s)	25, 83, 303
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	2 cut(s)	101, 193
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	2 cut(s)	162, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.