Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012322.1

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

4132 .. 9253

Gene Structure 5122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012322.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgtggcgggggtggtggtggagctctgactgggtcgatggcgacatcaatctctccctcccaggcgaaagttcaccagcgagcccacctaaggcggttttccgagtgaatttcaaaagaaagaacaattgtcttgtttatgcttccaccaacaacttcaacagggaccttcaccttcaatcaaaggtcaaaacagtgttagacagtgtaaagtgggatgacaaaggtttagcagttgcaatagctcaaaatgttgacacaggagccatcttgatgcaagggtttgcaaacagagaagcagtggctacaacaatctcctcccggaaggccacattctatagtcggtcgcgatcagcactgtggacaaagggagagacctccaataatttcattaatgtccatgacatcttccttgattgtgatcgagactctataatatacctagggaagcctgatggccctacttgccacacaggagcagagacttgctattacacctcggtgattgatttgttagaagatcagcagagtggaggagataaattcccgttgaccactctgaactctttagaatctacaattgcaaagcgaaaaggagaactagaagtcccacaatctggaaagccctcgtggacgagacgactactacttgatgagaaattgttgtgttcgaaaatcagggaagaggcagatgagctatgtcgaacattagaggagaatgaggataagtcacgtactgcctcagagatgggagatgtgctctatcattccatggttctgctggcccttaaagatggaaaaatggaagatgttctagaaattctacgacgtagattttctcagtcgggtatcgaggaaaagagaagtcgcaagacacaaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

294

Amino Acids

33.19

Weight (kDa)

6.47

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccII	CGCG	1 cut(s)	349
AciI	CCGC	2 cut(s)	7, 95
AcsI	RAATTY	3 cut(s)	109, 542, 819
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	2 cut(s)	91, 617
AgsI	TTSAA	3 cut(s)	115, 160, 179
AjnI	CCWGG	1 cut(s)	61
AleI	CACNNNNGTG	1 cut(s)	500
AloI	GAACNNNNNNTCC	2 cut(s)	591, 623
AluBI	AGCT	3 cut(s)	24, 245, 697
AluI	AGCT	3 cut(s)	24, 245, 697
Alw21I	GWGCWC	2 cut(s)	26, 762
Alw26I	GTCTC	4 cut(s)	368, 420, 476, 631
AoxI	GGCC	3 cut(s)	327, 457, 783
ApoI	RAATTY	3 cut(s)	109, 542, 819
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	810
AspA2I	CCTAGG	1 cut(s)	442
AspS9I	GGNCC	3 cut(s)	166, 458, 784
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	66, 164, 514
AsuII	TTCGAA	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	166
AvrII	CCTAGG	1 cut(s)	442
AxyI	CCTNAGG	1 cut(s)	90
BanII	GRGCYC	2 cut(s)	26, 86
BauI	CACGAG	1 cut(s)	628
Bbv12I	GWGCWC	2 cut(s)	26, 762
BccI	CCATC	5 cut(s)	32, 275, 449, 742, 788
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	4 cut(s)	368, 420, 476, 631
BfaI	CTAG	4 cut(s)	443, 602, 815, 883
BfmI	CTRYAG	1 cut(s)	337
BlnI	CCTAGG	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	63, 322
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	166, 458, 784
BmiI	GGNNCC	2 cut(s)	167, 265
BmrFI	CCNGG	2 cut(s)	63, 322
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
Bpu14I	TTCGAA	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	322
BsaAI	YACGTR	1 cut(s)	734
BsaBI	GATNNNNATC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	4 cut(s)	61, 442, 498, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 617
Bse1I	ACTGG	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	61, 442, 498, 771
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	91, 617
BseMII	CTCAG	2 cut(s)	756, 854
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	3 cut(s)	307, 549, 728
Bsh1236I	CGCG	1 cut(s)	349
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	3 cut(s)	329, 459, 785
BsiEI	CGRYCG	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	26, 762
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	2 cut(s)	179, 593
BslI	CCNNNNNNNGG	2 cut(s)	91, 617
BsmAI	GTCTC	4 cut(s)	368, 420, 476, 631
BsmBI	CGTCTC	1 cut(s)	631
BsmFI	GGGAC	2 cut(s)	179, 593
BsnI	GGCC	3 cut(s)	329, 459, 785
Bso31I	GGTCTC	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	671
Bsp1286I	GDGCHC	3 cut(s)	26, 86, 762
Bsp143I	GATC	3 cut(s)	350, 421, 520
Bsp19I	CCATGG	1 cut(s)	771
Bsp68I	TCGCGA	1 cut(s)	349
BspACI	CCGC	2 cut(s)	7, 95
BspANI	GGCC	3 cut(s)	329, 459, 785
BspCNI	CTCAG	2 cut(s)	755, 853
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	167, 265
BspT104I	TTCGAA	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	4 cut(s)	61, 442, 498, 771
BssMI	GATC	3 cut(s)	350, 421, 520
BssSI	CACGAG	1 cut(s)	628
BssT1I	CCWWGG	2 cut(s)	442, 771
Bst2BI	CACGAG	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	196, 206, 360
Bst6I	CTCTTC	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	82, 783
BstDEI	CTNAG	3 cut(s)	90, 742, 840
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	3 cut(s)	353, 424, 523
BstMAI	GTCTC	4 cut(s)	368, 420, 476, 631
BstMBI	GATC	3 cut(s)	350, 421, 520
BstMCI	CGRYCG	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	61, 320
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	329, 459, 785
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	4 cut(s)	201, 211, 306, 356
BtuMI	TCGCGA	1 cut(s)	349
Cac8I	GCNNGC	2 cut(s)	82, 783
Cfr13I	GGNCC	3 cut(s)	166, 458, 784
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	2 cut(s)	401, 772
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	3 cut(s)	90, 742, 840
DpnI	GATC	3 cut(s)	352, 423, 522
DpnII	GATC	3 cut(s)	350, 421, 520
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	442, 771
Eco24I	GRGCYC	2 cut(s)	26, 86
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	442, 771
EcoT38I	GRGCYC	2 cut(s)	26, 86
ErhI	CCWWGG	2 cut(s)	442, 771
Esp3I	CGTCTC	1 cut(s)	631
FaeI	CATG	2 cut(s)	404, 775
FaiI	YATR	7 cut(s)	141, 339, 402, 434, 439, 700, 773
FaqI	GGGAC	2 cut(s)	179, 593
FatI	CATG	2 cut(s)	400, 771
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	2 cut(s)	26, 86
FspBI	CTAG	4 cut(s)	443, 602, 815, 883
HaeIII	GGCC	3 cut(s)	329, 459, 785
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	2 cut(s)	404, 775
HincII	GTYRAC	2 cut(s)	256, 552
HindII	GTYRAC	2 cut(s)	256, 552
HinfI	GANTC	2 cut(s)	428, 572
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	3 cut(s)	66, 164, 514
Hpy166II	GTNNAC	5 cut(s)	74, 256, 363, 552, 633
Hpy188I	TCNGA	4 cut(s)	28, 104, 561, 745
Hpy188III	TCNNGA	5 cut(s)	271, 348, 425, 618, 815
Hpy8I	GTNNAC	5 cut(s)	74, 256, 363, 552, 633
Hpy99I	CGWCG	1 cut(s)	831
HpyAV	CCTTC	3 cut(s)	179, 185, 319
HpyCH4III	ACNGT	3 cut(s)	196, 206, 360
HpyCH4IV	ACGT	2 cut(s)	733, 829
HpyCH4V	TGCA	4 cut(s)	239, 277, 287, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	3 cut(s)	90, 742, 840
HpySE526I	ACGT	2 cut(s)	733, 829
Hsp92II	CATG	2 cut(s)	404, 775
Kzo9I	GATC	3 cut(s)	350, 421, 520
LmnI	GCTCC	3 cut(s)	21, 263, 476
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	4 cut(s)	443, 602, 815, 883
MaeII	ACGT	2 cut(s)	733, 829
MaeIII	GTNAC	1 cut(s)	729
MalI	GATC	3 cut(s)	352, 423, 522
MboI	GATC	3 cut(s)	350, 421, 520
MboII	GAAGA	4 cut(s)	400, 530, 695, 818
MfeI	CAATTG	2 cut(s)	127, 579
MhlI	GDGCHC	3 cut(s)	26, 86, 762
MluCI	AATT	7 cut(s)	109, 127, 385, 542, 579, 659, 819
MlyI	GAGTC	1 cut(s)	422
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	2 cut(s)	393, 789
MslI	CAYNNNNRTG	2 cut(s)	272, 500
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	63, 322
MunI	CAATTG	2 cut(s)	127, 579
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	322
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	3 cut(s)	350, 421, 520
NlaIII	CATG	2 cut(s)	404, 775
NlaIV	GGNNCC	2 cut(s)	167, 265
NmuCI	GTSAC	1 cut(s)	729
NruI	TCGCGA	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	572
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	617
PfoI	TCCNGGA	1 cut(s)	320
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	734
PpuMI	RGGWCCY	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	167, 265
PspPI	GGNCC	3 cut(s)	166, 458, 784
PspPPI	RGGWCCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	349
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
RseI	CAYNNNNRTG	2 cut(s)	272, 500
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	393, 789
Sau3AI	GATC	3 cut(s)	350, 421, 520
Sau96I	GGNCC	3 cut(s)	166, 458, 784
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	63, 322
SduI	GDGCHC	3 cut(s)	26, 86, 762
SfaNI	GCATC	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	671
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	272, 500
Sse9I	AATT	7 cut(s)	109, 127, 385, 542, 579, 659, 819
SsiI	CCGC	2 cut(s)	7, 95
SspMI	CTAG	4 cut(s)	443, 602, 815, 883
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	61, 320
StyI	CCWWGG	2 cut(s)	442, 771
TaaI	ACNGT	3 cut(s)	196, 206, 360
TaiI	ACGT	2 cut(s)	736, 832
TaqI	TCGA	5 cut(s)	36, 424, 671, 703, 852
TaqII	GACCGA	1 cut(s)	333
TasI	AATT	7 cut(s)	109, 127, 385, 542, 579, 659, 819
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	393, 789
Tru9I	TTAA	2 cut(s)	393, 789
TscAI	CASTG	4 cut(s)	201, 211, 306, 363
TseFI	GTSAC	1 cut(s)	729
Tsp45I	GTSAC	1 cut(s)	729
TspDTI	ATGAA	1 cut(s)	379
TspRI	CASTG	4 cut(s)	201, 211, 306, 363
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	166
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	3 cut(s)	109, 542, 819
XbaI	TCTAGA	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	778
XmaJI	CCTAGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	4 cut(s)	443, 602, 815, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.