Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

39841762 .. 39844036

Gene Structure 2275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0330200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCAGGATGGAAGGCCGCGATGACTGGTGGGGCTGGGCTTACTGGTAGCAGCGGCAATGTGGAGGTCAAAAGTGACTCAATTAGTGAAGGGAGTTCGGATTTTGATCTGGAATCAGATGGGTCACTGCCCTTTTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTCGGAAGGTTAAAGTAGGAAGTTCATATCAGAGTTGTTGTGCGGTTGTAAAGAACATGCAAAGATGTGTCTATGCAATTCCGGACAGTCCTTTATTTCAAACTGACGAAATGATGAAGCTTGAAAAGGATGCCGAGGACTCAAGGATTTCACCCACAGATTTTCGTAAGAAGCTGCATGATGCGGCTTCAGAATTAAAGAATGAATTAGCAAAGAAGTTGTTGGATCTCAATGTATCAGCTTTTAGCATGGCACCTGTCAAGGATCCACCACTATCAGCAGATCTAAAAGGAGAAACTTTTTGTGCTCTTCTAGGAACTCATAGCAGCGCGTTGGAACTTTTCCTTGTTAAAAGGAAGATAAAAGGACCTTCTTGGCTATCAGTTTCAAATTTTTCCATCTGCCCAGCTCCACAACGGGTAAGCTGGTGCAAATTTGAGGTGATCGTGAATGCTCCGAAAGATATAAGGGTCTCAGCTTCCACAAAGAAAACTGTAGATATTCCTCAAGTGGTTGTTACTGCAATAAGTTTGAAAACTATTATCAATGAGAAGCAGAATGTTAACGAAATTGTCTCTGCATCTGTTGTCTGCTGTAACAAGGCCAAGATTGACACTCCTGTGAAGGACTCAGAATGGAAGAGTCCTGGTATGCTGAGCCACTTTACGGTTGTCCGTAAGCTTGATGGTGGCATATTTCCTATGGGGTTTACTAAAGTGGCTGCAGATAAGAATTCTAAAGCCGGATCAAATGTCTTGAGCATTGAGGGCAGGTGGGCTTTACTCGCTTATCTTGTTCTCAATGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

334

Amino Acids

36.39

Weight (kDa)

8.01

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_B_exo1	PF03104	172 - 269	1.5e-09	DNA polymerase family B, exonuclease domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	954
Acc36I	ACCTGC	1 cut(s)	954
AccB1I	GGYRCC	1 cut(s)	445
AccII	CGCG	2 cut(s)	20, 524
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	4 cut(s)	18, 54, 236, 377
AclWI	GGATC	4 cut(s)	426, 452, 465, 946
AcsI	RAATTY	4 cut(s)	583, 626, 925, 999
AcuI	CTGAAG	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	176, 859
AgsI	TTSAA	4 cut(s)	293, 317, 582, 727
AjnI	CCWGG	1 cut(s)	838
AleI	CACNNNNGTG	1 cut(s)	812
AluBI	AGCT	7 cut(s)	313, 367, 434, 602, 618, 671, 874
AluI	AGCT	7 cut(s)	313, 367, 434, 602, 618, 671, 874
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	2 cut(s)	670, 772
AlwI	GGATC	4 cut(s)	426, 452, 465, 946
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	2 cut(s)	15, 795
ApeKI	GCWGC	4 cut(s)	51, 367, 519, 914
ApoI	RAATTY	4 cut(s)	583, 626, 925, 999
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	167, 560
AsuHPI	GGTGA	2 cut(s)	336, 646
AvaII	GGWCC	2 cut(s)	167, 560
BaeGI	GKGCMC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	4 cut(s)	63, 354, 531, 901
BccI	CCATC	4 cut(s)	3, 113, 599, 872
BciT130I	CCWGG	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	670, 772
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	2 cut(s)	687, 915
BfuAI	ACCTGC	1 cut(s)	954
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	7 cut(s)	18, 52, 55, 368, 378, 520, 915
BlpI	GCTNAGC	1 cut(s)	848
BlsI	GCNGC	7 cut(s)	19, 53, 56, 369, 379, 521, 916
Bme1390I	CCNGG	1 cut(s)	840
Bme18I	GGWCC	2 cut(s)	167, 560
BmgT120I	GGNCC	2 cut(s)	167, 560
BmiI	GGNNCC	2 cut(s)	447, 459
BmrFI	CCNGG	1 cut(s)	840
BmsI	GCATC	4 cut(s)	136, 313, 364, 782
Bpu1102I	GCTNAGC	1 cut(s)	848
BpuEI	CTTGAG	3 cut(s)	319, 684, 970
BsaBI	GATNNNNATC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 859
Bse1I	ACTGG	2 cut(s)	31, 49
Bse3DI	GCAATG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	840
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	14, 328
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	176, 859
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	681, 837, 839
BseNI	ACTGG	2 cut(s)	31, 49
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	63, 354, 531, 901
BseYI	CCCAGC	2 cut(s)	35, 598
Bsh1236I	CGCG	2 cut(s)	20, 524
BshFI	GGCC	2 cut(s)	17, 797
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	275, 936
BslI	CCNNNNNNNGG	2 cut(s)	176, 859
BsmAI	GTCTC	2 cut(s)	670, 772
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	17, 797
Bso31I	GGTCTC	1 cut(s)	670
Bsp1286I	GDGCHC	2 cut(s)	182, 502
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	6 cut(s)	106, 418, 457, 475, 636, 938
Bsp1720I	GCTNAGC	1 cut(s)	848
BspACI	CCGC	4 cut(s)	18, 54, 236, 377
BspANI	GGCC	2 cut(s)	17, 797
BspCNI	CTCAG	3 cut(s)	680, 836, 840
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	20, 524
BspLI	GGNNCC	2 cut(s)	447, 459
BspMAI	CTGCAG	1 cut(s)	919
BspMI	ACCTGC	1 cut(s)	954
BspPI	GGATC	4 cut(s)	426, 452, 465, 946
BspQI	GCTCTTC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	31, 49
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	6 cut(s)	106, 418, 457, 475, 636, 938
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	4 cut(s)	184, 281, 688, 862
Bst6I	CTCTTC	3 cut(s)	150, 507, 827
BstDEI	CTNAG	3 cut(s)	667, 823, 848
BstF5I	GGATG	2 cut(s)	14, 328
BstFNI	CGCG	2 cut(s)	20, 524
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	6 cut(s)	109, 421, 460, 478, 639, 941
BstMAI	GTCTC	2 cut(s)	670, 772
BstMBI	GATC	6 cut(s)	106, 418, 457, 475, 636, 938
BstMWI	GCNNNNNNNGC	2 cut(s)	960, 977
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	2 cut(s)	142, 253
BstSCI	CCNGG	1 cut(s)	838
BstSFI	CTRYAG	2 cut(s)	687, 915
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	2 cut(s)	20, 524
BstV1I	GCAGC	4 cut(s)	63, 354, 531, 901
BstX2I	RGATCY	3 cut(s)	418, 457, 475
BstYI	RGATCY	3 cut(s)	418, 457, 475
BsuRI	GGCC	2 cut(s)	17, 797
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	14, 328
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	125, 180
BveI	ACCTGC	1 cut(s)	954
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	167, 560
CviAII	CATG	4 cut(s)	139, 250, 371, 442
DdeI	CTNAG	3 cut(s)	667, 823, 848
DpnI	GATC	6 cut(s)	108, 420, 459, 477, 638, 940
DpnII	GATC	6 cut(s)	106, 418, 457, 475, 636, 938
Eam1104I	CTCTTC	3 cut(s)	150, 507, 827
EarI	CTCTTC	3 cut(s)	150, 507, 827
Eco31I	GGTCTC	1 cut(s)	670
Eco47I	GGWCC	2 cut(s)	167, 560
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	1 cut(s)	838
FaeI	CATG	4 cut(s)	142, 253, 374, 445
FatI	CATG	4 cut(s)	138, 249, 370, 441
Fnu4HI	GCNGC	7 cut(s)	18, 52, 55, 368, 378, 520, 915
FokI	GGATG	2 cut(s)	21, 335
Fsp4HI	GCNGC	7 cut(s)	18, 52, 55, 368, 378, 520, 915
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	7 cut(s)	18, 52, 55, 368, 378, 520, 915
GsaI	CCCAGC	2 cut(s)	39, 602
HaeIII	GGCC	2 cut(s)	17, 797
HapII	CCGG	2 cut(s)	275, 936
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	4 cut(s)	142, 253, 374, 445
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	2 cut(s)	311, 872
HinfI	GANTC	5 cut(s)	77, 113, 332, 821, 835
HpaI	GTTAAC	1 cut(s)	757
HpaII	CCGG	2 cut(s)	275, 936
HphI	GGTGA	2 cut(s)	336, 646
Hpy166II	GTNNAC	2 cut(s)	757, 903
Hpy188I	TCNGA	7 cut(s)	100, 118, 198, 225, 385, 651, 826
Hpy188III	TCNNGA	4 cut(s)	110, 275, 640, 949
Hpy8I	GTNNAC	2 cut(s)	757, 903
HpyAV	CCTTC	5 cut(s)	7, 83, 193, 573, 811
HpyCH4III	ACNGT	4 cut(s)	184, 281, 688, 862
HpyCH4V	TGCA	7 cut(s)	253, 269, 370, 624, 716, 773, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	960, 977
HpyF3I	CTNAG	3 cut(s)	667, 823, 848
Hsp92II	CATG	4 cut(s)	142, 253, 374, 445
HspAI	GCGC	1 cut(s)	522
Kpn2I	TCCGGA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	757
Kzo9I	GATC	6 cut(s)	106, 418, 457, 475, 636, 938
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	2 cut(s)	607, 652
Lsp1109I	GCAGC	4 cut(s)	63, 354, 531, 901
LweI	GCATC	4 cut(s)	136, 313, 364, 782
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	4 cut(s)	74, 123, 709, 788
MalI	GATC	6 cut(s)	108, 420, 459, 477, 638, 940
MboI	GATC	6 cut(s)	106, 418, 457, 475, 636, 938
MboII	GAAGA	4 cut(s)	167, 494, 562, 844
MflI	RGATCY	3 cut(s)	418, 457, 475
MhlI	GDGCHC	2 cut(s)	182, 502
MluCI	AATT	9 cut(s)	81, 270, 386, 398, 583, 626, 762, 925, 999
MlyI	GAGTC	4 cut(s)	71, 326, 815, 844
MmeI	TCCRAC	2 cut(s)	396, 507
MnlI	CCTC	5 cut(s)	58, 322, 625, 708, 952
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	5 cut(s)	204, 389, 543, 756, 1003
MslI	CAYNNNNRTG	1 cut(s)	812
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	2 cut(s)	275, 936
MspR9I	CCNGG	1 cut(s)	840
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	2 cut(s)	20, 524
MwoI	GCNNNNNNNGC	2 cut(s)	960, 977
NdeII	GATC	6 cut(s)	106, 418, 457, 475, 636, 938
NlaIII	CATG	4 cut(s)	142, 253, 374, 445
NlaIV	GGNNCC	2 cut(s)	447, 459
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	74, 123
NspI	RCATGY	2 cut(s)	142, 253
OliI	CACNNNNGTG	1 cut(s)	812
PaqCI	CACCTGC	1 cut(s)	954
PciSI	GCTCTTC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	649
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	7 cut(s)	19, 53, 56, 369, 379, 521, 916
PleI	GAGTC	4 cut(s)	71, 326, 815, 843
PpsI	GAGTC	4 cut(s)	71, 326, 815, 843
PpuMI	RGGWCCY	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	838
PspFI	CCCAGC	2 cut(s)	35, 598
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	2 cut(s)	447, 459
PspPI	GGNCC	2 cut(s)	167, 560
PspPPI	RGGWCCY	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	919
PsuI	RGATCY	3 cut(s)	418, 457, 475
RseI	CAYNNNNRTG	1 cut(s)	812
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	5 cut(s)	204, 389, 543, 756, 1003
SatI	GCNGC	7 cut(s)	18, 52, 55, 368, 378, 520, 915
Sau3AI	GATC	6 cut(s)	106, 418, 457, 475, 636, 938
Sau96I	GGNCC	2 cut(s)	167, 560
SchI	GAGTC	4 cut(s)	71, 326, 815, 844
ScrFI	CCNGG	1 cut(s)	840
SduI	GDGCHC	2 cut(s)	182, 502
SfaNI	GCATC	4 cut(s)	136, 313, 364, 782
SfcI	CTRYAG	2 cut(s)	687, 915
SinI	GGWCC	2 cut(s)	167, 560
SmiMI	CAYNNNNRTG	1 cut(s)	812
SmlI	CTYRAG	3 cut(s)	334, 699, 949
SmoI	CTYRAG	3 cut(s)	334, 699, 949
Sse9I	AATT	9 cut(s)	81, 270, 386, 398, 583, 626, 762, 925, 999
SsiI	CCGC	4 cut(s)	18, 54, 236, 377
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	838
TaaI	ACNGT	4 cut(s)	184, 281, 688, 862
TasI	AATT	9 cut(s)	81, 270, 386, 398, 583, 626, 762, 925, 999
TauI	GCSGC	3 cut(s)	20, 57, 380
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	5 cut(s)	204, 389, 543, 756, 1003
Tru9I	TTAA	5 cut(s)	204, 389, 543, 756, 1003
TscAI	CASTG	2 cut(s)	132, 187
TseFI	GTSAC	2 cut(s)	74, 123
TseI	GCWGC	4 cut(s)	51, 367, 519, 914
Tsp45I	GTSAC	2 cut(s)	74, 123
TspDTI	ATGAA	3 cut(s)	207, 323, 411
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	2 cut(s)	132, 187
VpaK11BI	GGWCC	2 cut(s)	167, 560
XapI	RAATTY	4 cut(s)	583, 626, 925, 999
XceI	RCATGY	2 cut(s)	142, 253
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.