Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

47381223 .. 47385535

Gene Structure 4313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG376900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCAAGGTTTTGCAAACAGGGAAGCAGTGGCTGCAACAATCTCCTCCCAGAAGGCCACATTCTACAGTCGGTCGCGATCAACACTCTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTCCATGACATCTTCCTTGATTGTGATCGAGACTCTATAATATACCTAGGGAAGCCTGATGGCCCTACTTGCCACACGGGAGCAGAGACTTGCTATTACACCTCGGTGATTGATTTGTTAGAAGATCAGCAGAGCGGAGGAGATAAATGCCCTTTGACCACTCTGAACTCTTTAGAATCTACAATTGCAAAGCGAAAAGGAGAACTAGAAGTCCCACAATCTGGAAAGCCCTCATGGACGAGACGACTACTACTTGATGAGAAATTGTTGTGTTCAAAAATCAGGGAAGAGGCAGATGAGCTATGTCGAACATTAGAGGAGAATGAGGATAAGTCACGTACTGCCTCAGAGATGGGAGATGTGCTCTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATGGAAGATGTTCTAGAAATTCTACGACGTAGATTTTCTCAGTCAGGTATCGAGGAAAAGAGAAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

203

Amino Acids

22.89

Weight (kDa)

5.55

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	1 - 74	3.9e-28	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	114 - 187	8.7e-12	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	1 cut(s)	76
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	546
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	399
AleI	CACNNNNGTG	1 cut(s)	227
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	4 cut(s)	95, 147, 203, 358
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	3 cut(s)	54, 184, 510
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	546
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	185, 511
AsuHPI	GGTGA	1 cut(s)	241
AvrII	CCTAGG	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	176, 469, 515
BcoDI	GTCTC	4 cut(s)	95, 147, 203, 358
BfaI	CTAG	4 cut(s)	170, 329, 542, 610
BfmI	CTRYAG	1 cut(s)	64
BisI	GCNGC	1 cut(s)	33
BlnI	CCTAGG	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	185, 511
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BsaAI	YACGTR	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	169, 225, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	169, 225, 498
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	2 cut(s)	483, 581
BseRI	GAGGAG	3 cut(s)	34, 276, 455
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	56, 186, 512
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	4 cut(s)	95, 147, 203, 358
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	56, 186, 512
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	77, 148, 247
Bsp19I	CCATGG	1 cut(s)	498
Bsp68I	TCGCGA	1 cut(s)	76
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	3 cut(s)	56, 186, 512
BspCNI	CTCAG	2 cut(s)	482, 580
BspFNI	CGCG	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	169, 225, 498
BssMI	GATC	3 cut(s)	77, 148, 247
BssT1I	CCWWGG	2 cut(s)	169, 498
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	469, 567
BstDSI	CCRYGG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	76
BstKTI	GATC	3 cut(s)	80, 151, 250
BstMAI	GTCTC	4 cut(s)	95, 147, 203, 358
BstMBI	GATC	3 cut(s)	77, 148, 247
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 192
BstSFI	CTRYAG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	56, 186, 512
BtgI	CCRYGG	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
BtuMI	TCGCGA	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	510
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	185, 511
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	3 cut(s)	128, 357, 499
CviJI	RGCY	8 cut(s)	32, 56, 178, 186, 352, 424, 512, 609
CviKI_1	RGCY	8 cut(s)	32, 56, 178, 186, 352, 424, 512, 609
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	469, 567
DpnI	GATC	3 cut(s)	79, 150, 249
DpnII	GATC	3 cut(s)	77, 148, 247
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	169, 498
Eco31I	GGTCTC	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	169, 498
ErhI	CCWWGG	2 cut(s)	169, 498
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	3 cut(s)	131, 360, 502
FaiI	YATR	6 cut(s)	129, 161, 166, 358, 427, 500
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	127, 356, 498
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	4 cut(s)	170, 329, 542, 610
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	56, 186, 512
Hin1II	CATG	3 cut(s)	131, 360, 502
HinfI	GANTC	2 cut(s)	155, 299
HphI	GGTGA	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	288, 472
Hpy188III	TCNNGA	5 cut(s)	75, 88, 152, 345, 542
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	2 cut(s)	460, 556
HpyCH4V	TGCA	4 cut(s)	4, 14, 35, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 192
HpyF3I	CTNAG	2 cut(s)	469, 567
HpySE526I	ACGT	2 cut(s)	460, 556
Hsp92II	CATG	3 cut(s)	131, 360, 502
Kzo9I	GATC	3 cut(s)	77, 148, 247
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	8 cut(s)	4, 62, 73, 192, 330, 391, 494, 558
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	4 cut(s)	170, 329, 542, 610
MaeII	ACGT	2 cut(s)	460, 556
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	3 cut(s)	79, 150, 249
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	3 cut(s)	77, 148, 247
MboII	GAAGA	4 cut(s)	127, 257, 422, 545
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	4 cut(s)	112, 306, 386, 546
MlyI	GAGTC	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	120, 516
MslI	CAYNNNNRTG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	32, 192
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	77, 148, 247
NlaIII	CATG	3 cut(s)	131, 360, 502
NmuCI	GTSAC	1 cut(s)	456
NruI	TCGCGA	1 cut(s)	76
OliI	CACNNNNGTG	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	185, 511
PstNI	CAGNNNCTG	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	76
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	120, 516
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	77, 148, 247
Sau96I	GGNCC	2 cut(s)	185, 511
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	489
SetI	ASST	8 cut(s)	10, 107, 171, 227, 426, 463, 559, 577
SfcI	CTRYAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	4 cut(s)	112, 306, 386, 546
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	4 cut(s)	170, 329, 542, 610
StyI	CCWWGG	2 cut(s)	169, 498
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	2 cut(s)	463, 559
TaqI	TCGA	3 cut(s)	151, 430, 579
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	112, 306, 386, 546
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	120, 516
Tru9I	TTAA	2 cut(s)	120, 516
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	344
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	546
XbaI	TCTAGA	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmaJI	CCTAGG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	4 cut(s)	170, 329, 542, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.