Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Reverse (-)

8977453 .. 8980698

Gene Structure 3246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1104500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGTAGAAGCAATTTCAGTAGAAAGAGCAGTTCTCTTGTTTATGCTTCCACCCACAACTTTGACAGGGACCTCCATCTTCAATCAAAGGTACCTACTTGTTGAAACAGTGTTAGACAATGTAAAATGGGATGACAAAGGTTTAGCGGTGGCCATAGCTCAAAACGTTGACACAGGAGCCATCTTGATGCAAGGCTTTGCTAACAGGGAGGCAGTGGCCATGACAGTTTCCTCACGGAAGGCTACATTCTACAGTCGGTCGCGATCAACCTTGTGGACAAAGGGAGTGACCTCCAATAATTTCATTAATGTCCAGGAAATCTTCCTTGATTGTGACCGAGACTCCATAATATACCTTGGGAAGCCTGATGGACCTACCTGCCACACAGGGTCAGAGACGTGCTATTATACACCAGTGCTTGATTTCTTGGAACATCGACAGGACGAAGAACATAAATTAGCTTTGACCACTTTGTACTCATTAGAGTCGACAATTGCCAAGCGAAAAGAAGAATTAGAAGTTCCAGAGAGTGGAAAGCCCTCGTGGACTTGCCGTCTACTATCTGATGAGAAGCTGTTGTGCTCGAAAATCAGGGAAGAGGCGGATGAGCTATGCCAAACACTGGAGGAAAACGAAGATAGGCTGCGTGCTGCCTCGGAGATGGCAGATGTGCTTTATCATGGCATGGCTCTGCTGGCCCGTAAAGGCGTGAAAATGGAAGAGGTTTTGGAAATTCTTCGGCGTAGGTTTTCCCAGTCGGGTATCGAGGAAAAGAGAAACCGCAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

264

Amino Acids

29.85

Weight (kDa)

5.34

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	63 - 136	7e-27	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	161 - 249	1.8e-15	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	386
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	90
AccB7I	CCANNNNNTGG	2 cut(s)	530, 622
AccI	GTMKAC	2 cut(s)	488, 556
AccII	CGCG	1 cut(s)	262
AciI	CCGC	3 cut(s)	146, 602, 781
AclI	AACGTT	1 cut(s)	165
AcoI	YGGCCR	2 cut(s)	150, 216
AcsI	RAATTY	1 cut(s)	732
AfaI	GTAC	2 cut(s)	92, 476
AfiI	CCNNNNNNNGG	2 cut(s)	530, 622
AgsI	TTSAA	2 cut(s)	82, 104
AhdI	GACNNNNNGTC	1 cut(s)	552
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	158, 461, 574, 610
AluI	AGCT	4 cut(s)	158, 461, 574, 610
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	2 cut(s)	333, 389
AoxI	GGCC	3 cut(s)	150, 216, 696
ApeKI	GCWGC	2 cut(s)	643, 650
ApoI	RAATTY	1 cut(s)	732
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	735
Asp718I	GGTACC	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	69, 371, 697
AvaII	GGWCC	2 cut(s)	69, 371
BalI	TGGCCA	2 cut(s)	152, 218
BanI	GGYRCC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	2 cut(s)	630, 637
BccI	CCATC	4 cut(s)	83, 188, 362, 655
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	333, 389
BfmI	CTRYAG	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	386
BisI	GCNGC	2 cut(s)	644, 651
BlsI	GCNGC	2 cut(s)	645, 652
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	2 cut(s)	69, 371
BmeRI	GACNNNNNGTC	1 cut(s)	552
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	3 cut(s)	69, 371, 697
BmiI	GGNNCC	3 cut(s)	70, 92, 178
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	748
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
BpmI	CTGGAG	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	355, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 622
Bse1I	ACTGG	3 cut(s)	413, 627, 754
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	355, 654
BseGI	GGATG	2 cut(s)	136, 610
BseLI	CCNNNNNNNGG	2 cut(s)	530, 622
BseNI	ACTGG	3 cut(s)	413, 627, 754
BseXI	GCAGC	2 cut(s)	630, 637
Bsh1236I	CGCG	1 cut(s)	262
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	152, 218, 698
BshNI	GGYRCC	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	584
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	530, 622
BsmAI	GTCTC	2 cut(s)	333, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	152, 218, 698
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp143I	GATC	1 cut(s)	263
Bsp68I	TCGCGA	1 cut(s)	262
BspACI	CCGC	3 cut(s)	146, 602, 781
BspANI	GGCC	3 cut(s)	152, 218, 698
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	70, 92, 178
BspMI	ACCTGC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	413, 627, 754
BssECI	CCNNGG	2 cut(s)	355, 654
BssMI	GATC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	541
BssT1I	CCWWGG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	541
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	109, 226, 254
Bst6I	CTCTTC	2 cut(s)	591, 714
BstC8I	GCNNGC	2 cut(s)	648, 696
BstF5I	GGATG	2 cut(s)	136, 610
BstFNI	CGCG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	266
BstMAI	GTCTC	2 cut(s)	333, 389
BstMBI	GATC	1 cut(s)	263
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	1 cut(s)	695
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	630, 637
BsuRI	GGCC	3 cut(s)	152, 218, 698
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	136, 610
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	4 cut(s)	114, 219, 420, 620
BtuMI	TCGCGA	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	2 cut(s)	648, 696
Cfr13I	GGNCC	3 cut(s)	69, 371, 697
Csp6I	GTAC	2 cut(s)	91, 475
CviAII	CATG	3 cut(s)	220, 680, 685
CviQI	GTAC	2 cut(s)	91, 475
DpnI	GATC	1 cut(s)	265
DpnII	GATC	1 cut(s)	263
DriI	GACNNNNNGTC	1 cut(s)	552
EaeI	YGGCCR	2 cut(s)	150, 216
Eam1104I	CTCTTC	2 cut(s)	591, 714
Eam1105I	GACNNNNNGTC	1 cut(s)	552
EarI	CTCTTC	2 cut(s)	591, 714
EciI	GGCGGA	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	69, 371
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	3 cut(s)	223, 683, 688
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	3 cut(s)	219, 679, 684
FblI	GTMKAC	2 cut(s)	488, 556
Fnu4HI	GCNGC	2 cut(s)	644, 651
FokI	GGATG	2 cut(s)	143, 617
Fsp4HI	GCNGC	2 cut(s)	644, 651
GluI	GCNGC	2 cut(s)	644, 651
GsuI	CTGGAG	1 cut(s)	644
HaeIII	GGCC	3 cut(s)	152, 218, 698
Hin1II	CATG	3 cut(s)	223, 683, 688
HincII	GTYRAC	2 cut(s)	169, 489
HindII	GTYRAC	2 cut(s)	169, 489
HinfI	GANTC	2 cut(s)	341, 485
Hpy166II	GTNNAC	5 cut(s)	169, 276, 489, 546, 557
Hpy188I	TCNGA	3 cut(s)	394, 565, 658
Hpy188III	TCNNGA	3 cut(s)	184, 261, 524
Hpy8I	GTNNAC	5 cut(s)	169, 276, 489, 546, 557
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	3 cut(s)	109, 226, 254
HpyCH4IV	ACGT	2 cut(s)	165, 398
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	695
HpySE526I	ACGT	2 cut(s)	165, 398
Hsp92II	CATG	3 cut(s)	223, 683, 688
KpnI	GGTACC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	2 cut(s)	630, 637
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	2 cut(s)	165, 398
MaeIII	GTNAC	2 cut(s)	286, 332
MalI	GATC	1 cut(s)	265
MboI	GATC	1 cut(s)	263
MboII	GAAGA	8 cut(s)	70, 313, 458, 521, 608, 647, 728, 731
MfeI	CAATTG	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	584
MlsI	TGGCCA	2 cut(s)	152, 218
MluCI	AATT	6 cut(s)	12, 298, 455, 492, 512, 732
MluNI	TGGCCA	2 cut(s)	152, 218
MlyI	GAGTC	2 cut(s)	335, 494
Mox20I	TGGCCA	2 cut(s)	152, 218
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	2 cut(s)	152, 218
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	2 cut(s)	152, 218
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	695
NdeII	GATC	1 cut(s)	263
NlaIII	CATG	3 cut(s)	223, 683, 688
NlaIV	GGNNCC	3 cut(s)	70, 92, 178
NmuCI	GTSAC	2 cut(s)	286, 332
NruI	TCGCGA	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	735
PflMI	CCANNNNNTGG	2 cut(s)	530, 622
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	645, 652
PleI	GAGTC	2 cut(s)	335, 493
PpsI	GAGTC	2 cut(s)	335, 493
PpuMI	RGGWCCY	1 cut(s)	69
PshBI	ATTAAT	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	70, 92, 178
PspPI	GGNCC	3 cut(s)	69, 371, 697
PspPPI	RGGWCCY	1 cut(s)	69
RruI	TCGCGA	1 cut(s)	262
RsaI	GTAC	2 cut(s)	92, 476
RsaNI	GTAC	2 cut(s)	91, 475
RseI	CAYNNNNRTG	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	487
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	644, 651
Sau3AI	GATC	1 cut(s)	263
Sau96I	GGNCC	3 cut(s)	69, 371, 697
SchI	GAGTC	2 cut(s)	335, 494
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	584
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	250
SinI	GGWCC	2 cut(s)	69, 371
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	6 cut(s)	12, 298, 455, 492, 512, 732
SsiI	CCGC	3 cut(s)	146, 602, 781
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	109, 226, 254
TaiI	ACGT	2 cut(s)	168, 401
TaqI	TCGA	4 cut(s)	436, 488, 584, 765
TaqII	GACCGA	2 cut(s)	246, 351
TasI	AATT	6 cut(s)	12, 298, 455, 492, 512, 732
TatI	WGTACW	1 cut(s)	474
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	4 cut(s)	114, 219, 420, 627
TseFI	GTSAC	2 cut(s)	286, 332
TseI	GCWGC	2 cut(s)	643, 650
Tsp45I	GTSAC	2 cut(s)	286, 332
TspDTI	ATGAA	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	4 cut(s)	114, 219, 420, 627
Van91I	CCANNNNNTGG	2 cut(s)	530, 622
VpaK11BI	GGWCC	2 cut(s)	69, 371
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	1 cut(s)	732
XmiI	GTMKAC	2 cut(s)	488, 556
XmnI	GAANNNNTTC	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.