Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Forward (+)

24677366 .. 24681059

Gene Structure 3694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGACGCGGGTGACAGACAATGGCAATTGTAGGATGACAAAGAAGAAGAAGATTGTTCAAGTAGAGGAGAAACAAACAACAGTCAGATGGAAGGTTCATATGAATGGCAAGTTCACAGTTCCATTGTCTGCAATCAGTCAGAGTATTGTCGCAAATGTAGTTAGGGTGTTCATCATTCAGCACTCTTGTTTATCTGATGACACTCAACTAGTCGAAACGGTGTTAGACAGTGTAAAGTGGGATGACAAAGGTTTAGCAGTTGCAATAGCTCAAAATGTTGACACTGGGGCCATCTTGATGCAAGGGTTTGCAAACAGGGAAGCAGTGGCTACAACAATCTCCTCCCGGAAGGCCACATTCTACAGGAAGCCTGATGGCCCTACTTGCCACACAGGAGCAGAGACTTGCTATTACACCTCGGTGATTGATTTGTTAGAAGATCAGCAGAGCGGGGGAGATAAATTCCCGTTGACCACTCTGAACTCTTTAGAATCTACAATTGCAAAGCGAAAAGGAGAACTAGAAGTCCCACAATCTGGAAAGCCCTCATGGACGAGACGACTACTACTTGATGAGAAATTGTTGTGTTCAAAAATCAGGGAAGAGGCAGATGAGCTATGTCGAACATTAGAGGAGAATGAGGATAAGTCACGTACTGCCTCAGAGATGGGGGATGTGCTCTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATGGAAGATGTTCTAGAAATTCTACGACGTAGATTTTCTCAGTCGGGTATCGAGGAAAAGAGTAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

267

Amino Acids

29.92

Weight (kDa)

7.59

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-PH	PF01503	178 - 251	1.6e-11	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccBSI	CCGCTC	1 cut(s)	450
AccII	CGCG	1 cut(s)	7
AciI	CCGC	2 cut(s)	7, 450
AcsI	RAATTY	2 cut(s)	461, 738
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	2 cut(s)	59, 591
AhlI	ACTAGT	1 cut(s)	208
AleI	CACNNNNGTG	1 cut(s)	419
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	2 cut(s)	269, 616
AluI	AGCT	2 cut(s)	269, 616
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	395, 550
AoxI	GGCC	4 cut(s)	288, 351, 376, 702
ApoI	RAATTY	2 cut(s)	461, 738
Asp700I	GAANNNNTTC	1 cut(s)	729
AspS9I	GGNCC	3 cut(s)	288, 377, 703
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	22, 433
Bbv12I	GWGCWC	1 cut(s)	681
BccI	CCATC	5 cut(s)	81, 299, 368, 661, 707
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	395, 550
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	4 cut(s)	209, 521, 734, 802
BfmI	CTRYAG	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	288, 377, 703
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	417, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	417, 690
BseGI	GGATG	3 cut(s)	39, 247, 679
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	675, 773
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	3 cut(s)	80, 331, 647
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	4 cut(s)	290, 353, 378, 704
BsiHKAI	GWGCWC	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	2 cut(s)	395, 550
BsmBI	CGTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	4 cut(s)	290, 353, 378, 704
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	1 cut(s)	439
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	2 cut(s)	7, 450
BspANI	GGCC	4 cut(s)	290, 353, 378, 704
BspCNI	CTCAG	2 cut(s)	674, 772
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	417, 690
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	690
Bst4CI	ACNGT	4 cut(s)	82, 118, 220, 230
Bst6I	CTCTTC	1 cut(s)	597
BstBAI	YACGTR	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	2 cut(s)	661, 759
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	3 cut(s)	39, 247, 679
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	2 cut(s)	395, 550
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	361
BstUI	CGCG	1 cut(s)	7
BsuRI	GGCC	4 cut(s)	290, 353, 378, 704
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	3 cut(s)	39, 247, 679
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	235, 282, 330
Cac8I	GCNNGC	1 cut(s)	702
Cfr13I	GGNCC	3 cut(s)	288, 377, 703
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	654
CviAII	CATG	2 cut(s)	549, 691
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	2 cut(s)	661, 759
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	550
FaeI	CATG	2 cut(s)	552, 694
FaiI	YATR	5 cut(s)	99, 101, 550, 619, 692
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	2 cut(s)	548, 690
FauI	CCCGC	1 cut(s)	443
FauNDI	CATATG	1 cut(s)	99
FokI	GGATG	3 cut(s)	46, 254, 686
FspBI	CTAG	4 cut(s)	209, 521, 734, 802
HaeIII	GGCC	4 cut(s)	290, 353, 378, 704
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	552, 694
HincII	GTYRAC	2 cut(s)	280, 471
HindII	GTYRAC	2 cut(s)	280, 471
HinfI	GANTC	1 cut(s)	491
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	2 cut(s)	22, 433
Hpy166II	GTNNAC	3 cut(s)	114, 280, 471
Hpy188I	TCNGA	5 cut(s)	86, 141, 196, 480, 664
Hpy188III	TCNNGA	3 cut(s)	295, 537, 734
Hpy8I	GTNNAC	3 cut(s)	114, 280, 471
Hpy99I	CGWCG	1 cut(s)	750
HpyAV	CCTTC	2 cut(s)	85, 343
HpyCH4III	ACNGT	4 cut(s)	82, 118, 220, 230
HpyCH4IV	ACGT	2 cut(s)	652, 748
HpyCH4V	TGCA	5 cut(s)	131, 263, 301, 311, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	2 cut(s)	661, 759
HpySE526I	ACGT	2 cut(s)	652, 748
Hsp92II	CATG	2 cut(s)	552, 694
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	9 cut(s)	270, 301, 349, 359, 378, 384, 522, 583, 686
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	4 cut(s)	209, 521, 734, 802
MaeII	ACGT	2 cut(s)	652, 748
MaeIII	GTNAC	2 cut(s)	10, 648
MalI	GATC	1 cut(s)	441
MbiI	CCGCTC	1 cut(s)	450
MboI	GATC	1 cut(s)	439
MboII	GAAGA	6 cut(s)	55, 58, 61, 449, 614, 737
MfeI	CAATTG	2 cut(s)	25, 498
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	5 cut(s)	25, 461, 498, 578, 738
MnlI	CCTC	9 cut(s)	58, 352, 427, 556, 598, 625, 634, 670, 766
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	3 cut(s)	102, 296, 419
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	346
MunI	CAATTG	2 cut(s)	25, 498
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	2 cut(s)	552, 694
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	10, 648
OliI	CACNNNNGTG	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	1 cut(s)	491
PflMI	CCANNNNNTGG	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	344
Ppu21I	YACGTR	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	3 cut(s)	288, 377, 703
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	3 cut(s)	102, 296, 419
SaqAI	TTAA	1 cut(s)	708
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	3 cut(s)	288, 377, 703
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	681
SetI	ASST	7 cut(s)	96, 253, 271, 419, 618, 655, 751
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	3 cut(s)	102, 296, 419
SpeI	ACTAGT	1 cut(s)	208
Sse9I	AATT	5 cut(s)	25, 461, 498, 578, 738
SsiI	CCGC	2 cut(s)	7, 450
SspMI	CTAG	4 cut(s)	209, 521, 734, 802
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	4 cut(s)	82, 118, 220, 230
TaiI	ACGT	2 cut(s)	655, 751
TaqI	TCGA	3 cut(s)	213, 622, 771
TasI	AATT	5 cut(s)	25, 461, 498, 578, 738
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	3 cut(s)	235, 289, 330
TseFI	GTSAC	2 cut(s)	10, 648
Tsp45I	GTSAC	2 cut(s)	10, 648
TspDTI	ATGAA	3 cut(s)	86, 116, 160
TspRI	CASTG	3 cut(s)	235, 289, 330
Van91I	CCANNNNNTGG	1 cut(s)	536
XapI	RAATTY	2 cut(s)	461, 738
XbaI	TCTAGA	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	4 cut(s)	209, 521, 734, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.