Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002138

Physical Location & Seq

Genomic Coordinates Forward (+)

11847931 .. 11853449

Gene Structure 5519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1131000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTAGAAGCAATTTCAGTAGAAAGAGCAGTTCTCTTGTTTACGCTTCCTCCACCAGCAACTTTGACAGGGACCTCCATCTGCAATCAAAGGTACTGTAGTGCCAATAGATGTAATGTTGAAACAGTGTTAGACAGTGTAAAATGGGATGAGAAAGGTTTGGCAGTTGCCATAGCTCAAAACGTTGACACAGGAGCCATCTTGATGCAAGGCTTTGCTAACAGGGAAGCAGTGGCCACGACAGTTTCCTCCCGGAAGGCTACATTCTACAGTCGGTCGCGATCAACATTGTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTTCAAGAAATCTTCCTTGATTGTGACCGAGACTCGATAATATACCTTGGGAAGCCTGATGGACCTACTTGCCACACAGGGTCAGAGACGTGCTATTACACCCCAGTTCTTGATTTGTTGGAACATCGACAGGACGAAGAACATAAATTGGCATTGACCACTTTGTACTCGTTAGAGTCAACAATTGCTAAGCGAAAAGAAGAGTTAGAAGTTCCAGAGAGTGGAAAGCCCTCATGGACTCGGCGTCTACTATCTGATGAGAAGTTGTTGTGCTCAAAAATCAGGGAAGAGGCGGATGAGCTATGCCGAACACTAGAGGAGAACGAAGACAGGCTGCGTGCTGCCTCAGAGATGGCAGATGTGCTTTATCATGGCATGGCTCTTCTGGCCCGTAAAGGCGTGAAAATGGAAGAGGTTTTGGAAATTCTTCGGCGTAGGTTTTCTCAGTCGGGTATCGAGGAAAAGAGAAATCGCAAGTCACAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

272

Amino Acids

30.63

Weight (kDa)

5.61

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	69 - 142	6.6e-28	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	167 - 255	4e-15	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31860 AT1G31860 AT1G31860
fragaria_vesca	FvH4_3g33130 FvH4_3g33130 FvH4_3g33130 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080 FvH4_6g09080
malus_domestica	MD03G1104300.v1.1 MD03G1104400.v1.1 MD03G1104500.v1.1 MD11G1131000.v1.1
prunus_persica	Prupe.6G095300_v2.0.a1 Prupe.6G095300_v2.0.a1
pyrus_communis	pycom11g10830
rosa_chinensis	RchiOBHm_Chr5g0060441 RchiOBHm_Chr5g0060451 RchiOBHm_Chr7g0223141
rosa_laevigata	RLG00000001998 RLG00000018676 RLG00000035364
rosa_multiflora	Rmu_sc0012322.1_g000002 Rmu_sc0034987.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020380 Rroxscaffold_2G00121710 Rroxscaffold_3G00236060
rosa_rugosa	Rorug05G0330100 Rorug05G0330200 Rorug05G0330300 Rorug05G0330400 Rorug07G0213400
rosa_samantha	Rh5AG394800 Rh5BG407000 Rh5CG430800 Rh5CG430900 Rh5DG422000 Rh7AG358500 Rh7BG346600 Rh7CG376900 Rh7DG353900
rosa_wichuraiana	Rw5G037130 Rw7G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	574
AccII	CGCG	1 cut(s)	280
AciI	CCGC	1 cut(s)	620
AclI	AACGTT	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	750
AcyI	GRCGYC	1 cut(s)	571
AfaI	GTAC	2 cut(s)	95, 494
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	2 cut(s)	122, 332
AhdI	GACNNNNNGTC	1 cut(s)	570
AjiI	CACGTC	1 cut(s)	417
AluBI	AGCT	2 cut(s)	176, 628
AluI	AGCT	2 cut(s)	176, 628
Alw21I	GWGCWC	1 cut(s)	602
Alw26I	GTCTC	3 cut(s)	299, 351, 407
AoxI	GGCC	2 cut(s)	234, 714
ApeKI	GCWGC	2 cut(s)	661, 668
ApoI	RAATTY	1 cut(s)	750
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	753
AspS9I	GGNCC	3 cut(s)	72, 389, 715
AsuC2I	CCSGG	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	72, 389
BaeI	ACNNNNGTAYC	2 cut(s)	85, 118
BalI	TGGCCA	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	648, 655
BccI	CCATC	4 cut(s)	86, 206, 380, 673
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	3 cut(s)	299, 351, 407
BfaI	CTAG	2 cut(s)	641, 814
BfmI	CTRYAG	2 cut(s)	97, 268
BisI	GCNGC	2 cut(s)	662, 669
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	2 cut(s)	663, 670
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	72, 389
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	3 cut(s)	72, 389, 715
BmiI	GGNNCC	2 cut(s)	73, 196
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	571
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	154, 628
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMII	CTCAG	2 cut(s)	687, 785
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	2 cut(s)	648, 655
Bsh1236I	CGCG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	2 cut(s)	236, 716
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	602
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	3 cut(s)	299, 351, 407
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	236, 716
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp143I	GATC	1 cut(s)	281
Bsp1720I	GCTNAGC	1 cut(s)	516
Bsp68I	TCGCGA	1 cut(s)	280
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	2 cut(s)	236, 716
BspCNI	CTCAG	2 cut(s)	686, 784
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	73, 196
BspQI	GCTCTTC	1 cut(s)	714
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	1 cut(s)	281
BssNI	GRCGYC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	373
Bst4CI	ACNGT	5 cut(s)	98, 127, 137, 244, 272
Bst6I	CTCTTC	4 cut(s)	522, 609, 714, 732
BstACI	GRCGYC	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	3 cut(s)	516, 673, 771
BstF5I	GGATG	2 cut(s)	154, 628
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	284
BstMAI	GTCTC	3 cut(s)	299, 351, 407
BstMBI	GATC	1 cut(s)	281
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	2 cut(s)	97, 268
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	648, 655
BstV2I	GAAGAC	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	236, 716
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	154, 628
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	3 cut(s)	132, 142, 237
BtuMI	TCGCGA	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	666
Cfr13I	GGNCC	3 cut(s)	72, 389, 715
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	94, 493
CviAII	CATG	3 cut(s)	561, 698, 703
CviQI	GTAC	2 cut(s)	94, 493
DdeI	CTNAG	3 cut(s)	516, 673, 771
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
DriI	GACNNNNNGTC	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	4 cut(s)	522, 609, 714, 732
Eam1105I	GACNNNNNGTC	1 cut(s)	570
EarI	CTCTTC	4 cut(s)	522, 609, 714, 732
EciI	GGCGGA	1 cut(s)	635
Eco130I	CCWWGG	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	2 cut(s)	72, 389
EcoO109I	RGGNCCY	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	3 cut(s)	564, 701, 706
FaiI	YATR	7 cut(s)	173, 370, 471, 562, 631, 699, 704
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	3 cut(s)	560, 697, 702
FblI	GTMKAC	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	662, 669
FokI	GGATG	2 cut(s)	161, 635
Fsp4HI	GCNGC	2 cut(s)	662, 669
FspBI	CTAG	2 cut(s)	641, 814
GluI	GCNGC	2 cut(s)	662, 669
HaeIII	GGCC	2 cut(s)	236, 716
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	571
Hin1II	CATG	3 cut(s)	564, 701, 706
HincII	GTYRAC	2 cut(s)	187, 507
HindII	GTYRAC	2 cut(s)	187, 507
HinfI	GANTC	3 cut(s)	359, 503, 565
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	5 cut(s)	42, 187, 294, 507, 575
Hpy188I	TCNGA	3 cut(s)	412, 583, 676
Hpy188III	TCNNGA	5 cut(s)	202, 279, 332, 437, 542
Hpy8I	GTNNAC	5 cut(s)	42, 187, 294, 507, 575
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	5 cut(s)	98, 127, 137, 244, 272
HpyCH4IV	ACGT	2 cut(s)	183, 416
HpyCH4V	TGCA	2 cut(s)	84, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	3 cut(s)	516, 673, 771
HpySE526I	ACGT	2 cut(s)	183, 416
Hsp92I	GRCGYC	1 cut(s)	571
Hsp92II	CATG	3 cut(s)	564, 701, 706
Kzo9I	GATC	1 cut(s)	281
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	2 cut(s)	648, 655
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	641, 814
MaeII	ACGT	2 cut(s)	183, 416
MaeIII	GTNAC	2 cut(s)	350, 804
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	8 cut(s)	331, 476, 539, 626, 665, 701, 746, 749
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	602
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	5 cut(s)	12, 316, 473, 510, 750
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	3 cut(s)	353, 512, 559
MmeI	TCCRAC	1 cut(s)	426
Mox20I	TGGCCA	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	713
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	3 cut(s)	564, 701, 706
NlaIV	GGNNCC	2 cut(s)	73, 196
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	2 cut(s)	350, 804
NruI	TCGCGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	753
PflMI	CCANNNNNTGG	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	663, 670
PleI	GAGTC	3 cut(s)	353, 511, 559
PpsI	GAGTC	3 cut(s)	353, 511, 559
PpuMI	RGGWCCY	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	73, 196
PspPI	GGNCC	3 cut(s)	72, 389, 715
PspPPI	RGGWCCY	1 cut(s)	72
RruI	TCGCGA	1 cut(s)	280
RsaI	GTAC	2 cut(s)	95, 494
RsaNI	GTAC	2 cut(s)	94, 493
RseI	CAYNNNNRTG	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	662, 669
Sau3AI	GATC	1 cut(s)	281
Sau96I	GGNCC	3 cut(s)	72, 389, 715
SchI	GAGTC	3 cut(s)	353, 512, 559
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	602
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	2 cut(s)	97, 268
SinI	GGWCC	2 cut(s)	72, 389
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	12, 316, 473, 510, 750
SsiI	CCGC	1 cut(s)	620
SspMI	CTAG	2 cut(s)	641, 814
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	5 cut(s)	98, 127, 137, 244, 272
TaiI	ACGT	2 cut(s)	186, 419
TaqI	TCGA	3 cut(s)	362, 454, 783
TaqII	GACCGA	2 cut(s)	264, 369
TasI	AATT	5 cut(s)	12, 316, 473, 510, 750
TatI	WGTACW	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	3 cut(s)	132, 142, 237
TseFI	GTSAC	2 cut(s)	350, 804
TseI	GCWGC	2 cut(s)	661, 668
Tsp45I	GTSAC	2 cut(s)	350, 804
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	3 cut(s)	132, 142, 237
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	2 cut(s)	72, 389
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	1 cut(s)	750
XmiI	GTMKAC	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	2 cut(s)	641, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.