FvH4_3g35980

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003209
Physical Location & Seq
Reverse (-)
30855710 .. 30858014
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35980.t2

Sequence Viewer

Length: 981 bp
ATGTCTGTTTTGAGCAACCATAGTGGTACGACTACTACACCATTGTTTCATGAATTGAAGAAGCAAGCTTCTTTCTTTTTCAAGGAGAAGATCAAGAACGCAAGGTTGGTCCTCACAGATGTAACACCGGCTCAATTATTAACTGAGGAAGCTACAAATGGAAATCCTTGGGCACCAGACACAAGGACCTTGGCTTCAATTTCAAAGGCTGCTTTTGAACTTGACGACTTTACACGAATAGTAGAGATTTTGCACAAAAGGTTCCTCAAGTTTGAGAGGAAGGAGTGGAGGGTATCTTACAATTCTCTGATTGTCCTTGAAAACTTGTTGACTCATGGACCAGAGAGTGTTGCAGCTGAGTTCGAAGTTGACAAAGATGTTATTGAACAGATGGGAGGCTTTCAGCATATAGATGAGAAAGGATTCAATTGGGGTCTTGCTGTTAGAAAAAAGTCTGGGAGAATATTGAAGCTGCTAAACCAAGGAAACCTTCTCAAAGAAGAGAGAGACCGAGCTCGGAAAGTAACAAGAGGCATTCAAGGATTTGGAAGCTTTTGCCAAAGAACATCTTCGTCACAAGGCATTTTAAGAGAATCCTCTTATGAAATTTATGGAAGGTCTAATTCTGACTTCATCAACCATGAAGATCAAGAAAATCAGCTACCATCCCCCACCATTGAAGATCTACAAAAGAAAGTTGAAGAATCCAAGCAGAAGAATGAAAGCGTATGCATCAACTCTAGCAAGGAAACAAAGAACTCAAGCACTTGGGATGGTCTGGTGGCTAAGAAACTTGAAACTCGAACAAGTTTAAAAGAAAACATGGTTCCAGACAAGGAGGTATCAGATAAATGGAACTGCGAGGAGTTTAACCCACTTCTTTTGGATGAAAACAAAGATGAGTCCAGATTTGAACTGTCTACTGAAGATCACCCTTTCAGTGACGCTAACAATCAAAGTACATCTTCGTTGCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

327

Amino Acids

37.19

Weight (kDa)

5.67

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 36 - 153 2.9e-29 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 920
AcsI RAATTY 1 cut(s) 606
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 2 cut(s) 28, 961
AjuI GAANNNNNNNTTGG 4 cut(s) 89, 121, 474, 506
AluBI AGCT 7 cut(s) 68, 152, 356, 472, 515, 552, 661
AluI AGCT 7 cut(s) 68, 152, 356, 472, 515, 552, 661
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 501
ApeKI GCWGC 3 cut(s) 209, 353, 472
ApoI RAATTY 1 cut(s) 606
Asp700I GAANNNNTTC 2 cut(s) 422, 568
AspS9I GGNCC 3 cut(s) 109, 186, 338
AsuHPI GGTGA 1 cut(s) 923
AsuII TTCGAA 1 cut(s) 363
AvaII GGWCC 3 cut(s) 109, 186, 338
BaeGI GKGCMC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 3 cut(s) 196, 365, 459
BccI CCATC 3 cut(s) 385, 673, 767
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 741
BglII AGATCT 1 cut(s) 682
BisI GCNGC 3 cut(s) 210, 354, 473
BlsI GCNGC 3 cut(s) 211, 355, 474
Bme18I GGWCC 3 cut(s) 109, 186, 338
BmgT120I GGNCC 3 cut(s) 109, 186, 338
BmiI GGNNCC 3 cut(s) 174, 263, 828
BmsI GCATC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 363
BpuEI CTTGAG 2 cut(s) 251, 745
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 167, 189, 481
Bse118I RCCGGY 1 cut(s) 127
BseDI CCNNGG 3 cut(s) 167, 189, 481
BseGI GGATG 3 cut(s) 665, 778, 892
BseMII CTCAG 2 cut(s) 135, 348
BseRI GAGGAG 1 cut(s) 878
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 3 cut(s) 196, 365, 459
BshNI GGYRCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 501
BsmI GAATGC 1 cut(s) 534
Bso31I GGTCTC 1 cut(s) 501
Bsp119I TTCGAA 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 175, 517
Bsp143I GATC 4 cut(s) 90, 646, 682, 928
BspCNI CTCAG 2 cut(s) 136, 349
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 3 cut(s) 174, 263, 828
BspT104I TTCGAA 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 167, 189, 481
BssMI GATC 4 cut(s) 90, 646, 682, 928
BssT1I CCWWGG 3 cut(s) 167, 189, 481
Bst4CI ACNGT 1 cut(s) 918
Bst6I CTCTTC 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 144, 357, 786
BstF5I GGATG 3 cut(s) 665, 778, 892
BstKTI GATC 4 cut(s) 93, 649, 685, 931
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 4 cut(s) 90, 646, 682, 928
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 3 cut(s) 196, 365, 459
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BtsCI GGATG 3 cut(s) 665, 778, 892
BtsIMutI CAGTG 1 cut(s) 946
Cac8I GCNNGC 1 cut(s) 66
CciI TCATGA 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 109, 186, 338
CseI GACGC 1 cut(s) 953
Csp6I GTAC 2 cut(s) 27, 960
CspCI CAANNNNNGTGG 4 cut(s) 4, 39, 864, 899
CviAII CATG 4 cut(s) 50, 335, 641, 823
CviQI GTAC 2 cut(s) 27, 960
DdeI CTNAG 3 cut(s) 144, 357, 786
DpnI GATC 4 cut(s) 92, 648, 684, 930
DpnII GATC 4 cut(s) 90, 646, 682, 928
DraI TTTAAA 1 cut(s) 813
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 3 cut(s) 167, 189, 481
Eco24I GRGCYC 1 cut(s) 517
Eco31I GGTCTC 1 cut(s) 501
Eco47I GGWCC 3 cut(s) 109, 186, 338
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 945
EcoICRI GAGCTC 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 186
EcoT14I CCWWGG 3 cut(s) 167, 189, 481
EcoT22I ATGCAT 1 cut(s) 734
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 3 cut(s) 167, 189, 481
FaeI CATG 4 cut(s) 53, 338, 644, 826
FalI AAGNNNNNCTT 6 cut(s) 474, 506, 553, 585, 949, 981
FatI CATG 4 cut(s) 49, 334, 640, 822
FblI GTMKAC 1 cut(s) 920
Fnu4HI GCNGC 3 cut(s) 210, 354, 473
FokI GGATG 3 cut(s) 652, 785, 899
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 3 cut(s) 210, 354, 473
FspBI CTAG 1 cut(s) 741
GluI GCNGC 3 cut(s) 210, 354, 473
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 953
Hin1II CATG 4 cut(s) 53, 338, 644, 826
HincII GTYRAC 2 cut(s) 330, 370
HindII GTYRAC 2 cut(s) 330, 370
HindIII AAGCTT 2 cut(s) 66, 550
HinfI GANTC 5 cut(s) 331, 423, 593, 704, 902
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 923
Hpy166II GTNNAC 3 cut(s) 330, 370, 921
Hpy188I TCNGA 4 cut(s) 309, 519, 628, 847
Hpy188III TCNNGA 5 cut(s) 50, 94, 650, 830, 906
Hpy8I GTNNAC 3 cut(s) 330, 370, 921
HpyAV CCTTC 3 cut(s) 274, 500, 609
HpyCH4III ACNGT 1 cut(s) 918
HpyCH4V TGCA 3 cut(s) 253, 353, 732
HpyF3I CTNAG 3 cut(s) 144, 357, 786
Hsp92II CATG 4 cut(s) 53, 338, 644, 826
Kzo9I GATC 4 cut(s) 90, 646, 682, 928
LpnPI CCDG 7 cut(s) 141, 189, 354, 441, 764, 843, 919
Lsp1109I GCAGC 3 cut(s) 196, 365, 459
LweI GCATC 1 cut(s) 741
MaeI CTAG 1 cut(s) 741
MaeIII GTNAC 4 cut(s) 121, 523, 573, 941
MalI GATC 4 cut(s) 92, 648, 684, 930
MboI GATC 4 cut(s) 90, 646, 682, 928
MfeI CAATTG 1 cut(s) 427
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 2 cut(s) 175, 517
MluCI AATT 7 cut(s) 53, 134, 198, 301, 427, 606, 622
MlyI GAGTC 2 cut(s) 325, 911
Mph1103I ATGCAT 1 cut(s) 734
MroXI GAANNNNTTC 2 cut(s) 422, 568
MseI TTAA 4 cut(s) 140, 587, 812, 870
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 427
Mva1269I GAATGC 1 cut(s) 534
NdeII GATC 4 cut(s) 90, 646, 682, 928
NlaIII CATG 4 cut(s) 53, 338, 644, 826
NlaIV GGNNCC 3 cut(s) 174, 263, 828
NmuCI GTSAC 2 cut(s) 573, 941
NsiI ATGCAT 1 cut(s) 734
NspV TTCGAA 1 cut(s) 363
PagI TCATGA 1 cut(s) 49
PctI GAATGC 1 cut(s) 534
PdmI GAANNNNTTC 2 cut(s) 422, 568
PfeI GAWTC 3 cut(s) 423, 593, 704
PkrI GCNGC 3 cut(s) 211, 355, 474
PleI GAGTC 2 cut(s) 325, 910
PpsI GAGTC 2 cut(s) 325, 910
PpuMI RGGWCCY 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 517
Psp5II RGGWCCY 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 174, 263, 828
PspPI GGNCC 3 cut(s) 109, 186, 338
PspPPI RGGWCCY 1 cut(s) 186
PsuI RGATCY 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 2 cut(s) 28, 961
RsaNI GTAC 2 cut(s) 27, 960
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 4 cut(s) 140, 587, 812, 870
SatI GCNGC 3 cut(s) 210, 354, 473
Sau3AI GATC 4 cut(s) 90, 646, 682, 928
Sau96I GGNCC 3 cut(s) 109, 186, 338
SchI GAGTC 2 cut(s) 325, 911
SduI GDGCHC 2 cut(s) 175, 517
SfaNI GCATC 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 363
SinI GGWCC 3 cut(s) 109, 186, 338
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 266, 760
SmoI CTYRAG 2 cut(s) 266, 760
Sse9I AATT 7 cut(s) 53, 134, 198, 301, 427, 606, 622
SspI AATATT 1 cut(s) 465
SspMI CTAG 1 cut(s) 741
SstI GAGCTC 1 cut(s) 517
StyI CCWWGG 3 cut(s) 167, 189, 481
TaaI ACNGT 1 cut(s) 918
TaqI TCGA 2 cut(s) 363, 802
TaqII GACCGA 1 cut(s) 525
TasI AATT 7 cut(s) 53, 134, 198, 301, 427, 606, 622
TatI WGTACW 1 cut(s) 959
TfiI GAWTC 3 cut(s) 423, 593, 704
Tru1I TTAA 4 cut(s) 140, 587, 812, 870
Tru9I TTAA 4 cut(s) 140, 587, 812, 870
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 2 cut(s) 573, 941
TseI GCWGC 3 cut(s) 209, 353, 472
Tsp45I GTSAC 2 cut(s) 573, 941
TspDTI ATGAA 7 cut(s) 38, 66, 618, 622, 657, 735, 903
TspRI CASTG 1 cut(s) 946
VpaK11BI GGWCC 3 cut(s) 109, 186, 338
XapI RAATTY 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 920
XmnI GAANNNNTTC 2 cut(s) 422, 568
XspI CTAG 1 cut(s) 741
Zsp2I ATGCAT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.