RchiOBHm_Chr5g0064341

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003209
Physical Location & Seq
Reverse (-)
70265054 .. 70266177
1124 bp
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UTR
Exon/CDS
Intron
PRQ34036

Sequence Viewer

Length: 447 bp
ATGTCTGTCTTGAGCAACCATAGTGGTACGACTACACCATTGTTTAATGAATTGAAGAAGCAAGCTTCCTTCTTTTTCAAGGAGAAGATCAAGAACGCAAGGTTGGTCCTCACAGATGTAACGCCAGCTCAATTATTGACTGAGGAAGCTACAAATGGAAATCCATGGGCACCAGACACAAGGACTTTGGCTTCAATTTCAAGGGCTGCTTTTGAACTCGACGACTTTACAAGAATTGTGGAGATTTTGCACAAAAGATTCCTCAAGTTTGAGAGAAAGGACTGGAGGGTATCATACAATTCTCTGATTGTGCTAGAAAACTTGTTGACTCATGGACCAGAGAGTGTTGCAGCTGAGTTTGAGGTTGACAAAGGTGTTATTGAACAGATGGGAGGCTTTCAGCACATTGATGAGAAAGGGTCAATTCAATTGGGGTCTTGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

148

Amino Acids

16.66

Weight (kDa)

5.81

Isoelectric Point (pI)

25.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 41 - 141 3.3e-23 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 7 cut(s) 55, 79, 195, 201, 215, 383, 428
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 4 cut(s) 65, 128, 149, 353
AluI AGCT 4 cut(s) 65, 128, 149, 353
ApeKI GCWGC 2 cut(s) 206, 350
AspS9I GGNCC 2 cut(s) 106, 335
AvaII GGWCC 2 cut(s) 106, 335
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 193, 362
BccI CCATC 1 cut(s) 382
BfaI CTAG 1 cut(s) 314
BisI GCNGC 2 cut(s) 207, 351
BlsI GCNGC 2 cut(s) 208, 352
Bme18I GGWCC 2 cut(s) 106, 335
BmgT120I GGNCC 2 cut(s) 106, 335
BmiI GGNNCC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 2 cut(s) 31, 248
BsaJI CCNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 164
BseMII CTCAG 2 cut(s) 132, 345
BseNI ACTGG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 2 cut(s) 193, 362
BshNI GGYRCC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 133, 346
BspLI GGNNCC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 169
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 63, 126
BstDEI CTNAG 2 cut(s) 141, 354
BstDSI CCRYGG 1 cut(s) 164
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 193, 362
BtgI CCRYGG 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 63, 126
Cfr13I GGNCC 2 cut(s) 106, 335
Csp6I GTAC 1 cut(s) 27
CspCI CAANNNNNGTGG 4 cut(s) 4, 39, 219, 254
CviAII CATG 2 cut(s) 165, 332
CviJI RGCY 7 cut(s) 65, 128, 149, 191, 206, 353, 396
CviKI_1 RGCY 7 cut(s) 65, 128, 149, 191, 206, 353, 396
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 2 cut(s) 141, 354
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 106, 335
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 2 cut(s) 168, 335
FaiI YATR 4 cut(s) 21, 166, 295, 333
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FatI CATG 2 cut(s) 164, 331
Fnu4HI GCNGC 2 cut(s) 207, 351
Fsp4HI GCNGC 2 cut(s) 207, 351
FspBI CTAG 1 cut(s) 314
GluI GCNGC 2 cut(s) 207, 351
GsuI CTGGAG 1 cut(s) 304
Hin1II CATG 2 cut(s) 168, 335
HincII GTYRAC 2 cut(s) 327, 367
HindII GTYRAC 2 cut(s) 327, 367
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 2 cut(s) 258, 328
Hpy166II GTNNAC 2 cut(s) 327, 367
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 2 cut(s) 10, 91
Hpy8I GTNNAC 2 cut(s) 327, 367
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 250, 350, 441
HpyF3I CTNAG 2 cut(s) 141, 354
Hsp92II CATG 2 cut(s) 168, 335
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 4 cut(s) 138, 186, 268, 351
Lsp1109I GCAGC 2 cut(s) 193, 362
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 67, 97
MfeI CAATTG 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 7 cut(s) 50, 131, 195, 234, 298, 423, 428
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 6 cut(s) 119, 136, 272, 279, 355, 386
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 353
MunI CAATTG 1 cut(s) 428
NcoI CCATGG 1 cut(s) 164
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 168, 335
NlaIV GGNNCC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 258
PkrI GCNGC 2 cut(s) 208, 352
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 2 cut(s) 106, 335
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 207, 351
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 106, 335
SchI GAGTC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 172
SetI ASST 7 cut(s) 67, 104, 130, 151, 355, 366, 376
SinI GGWCC 2 cut(s) 106, 335
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 10, 263
SmoI CTYRAG 2 cut(s) 10, 263
Sse9I AATT 7 cut(s) 50, 131, 195, 234, 298, 423, 428
SspMI CTAG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 164
TaqI TCGA 1 cut(s) 219
TasI AATT 7 cut(s) 50, 131, 195, 234, 298, 423, 428
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 2 cut(s) 206, 350
TspDTI ATGAA 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 106, 335
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.