Rroxscaffold_1G00016660

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003209
Physical Location & Seq
Forward (+)
20609388 .. 20611269
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016660.1

Sequence Viewer

Length: 990 bp
ATGTCTGTCTTGAGCAACCACAGTGGTACGACTACACCATTGTTTAATGAATTGAAGAAGCAAGCTTCCTTCTTTTTCAAGGAGAAGATCAAGAACGCAAGGTTGGTCCTCACAGATGTAACACCAGCTCAGTTATTGACTGAGGAAGCTACAAATGGAAATCCGTGGGCACCAGACACAAGGACTTTGGCTTCAATTTCAAGGGCTGCTTTTGAACTCGATGACTTTACAAGAATTGTGGAGATTTTGCACAAAAGATTCCTCAAGTTTGAGAGAAAGGACTGGAGGGTATCATACAATTCTCTAATTGTGCTTGAAAACTTGTTGACTCATGGACCAGAGAGTGTTGCAGCTGAGTTTGAGGTTGACAAAGGTGTTATTGAACAGATTGGAGGCTTTCAGCACATAGATGAGAAAGGGTCAATTCAATTGGGGTCTTGCAGTCAGAAAAAGTCTCTGAAAATATTGAAGCTGCTACACCAAGGAAACTTTCTCAAAGAAGAGAGAGACCGAGCTCGAAAACTAACAAGAGGCATTCAAGGATTTGGAAGCTTTTGCCAGAGAACATCTTCGGCACAAGGCATTTTAAGAGAATCATCGTATGAAACATATGGAAGGTCTAATTCTGACTTCGTCAACCATGAAGATCAAGAAAATCAGCTACCATCCCCCAGTATTATTGAAGATTTGCCAAAGAAATTAGGAGAATCGAAACAGAATAATGAAAGCGTAAGCACCGACTCTAGCAAGGAAGCAGGGAATTCAAGCTCTAGGGATGGTCTGGTGTCTAAGAAACCTGAAACTCGAACAAGTTTTAAAGAAAACAAGGTTCCAAACAAGGAGATATTAGATAAATGGAACTGCGAGGAGGAGTTTAACCCACTTCTTTTCGGTGATAACAAAGATGAGTCCAGAATTGAACTTTCTACTGAAGATGATCACCCTTTCAGTGACACTAACAATCAAAGTGCATCTTCGTTGCTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

329

Amino Acids

37.12

Weight (kDa)

5.57

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 41 - 164 2.7e-24 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 760
AcuI CTGAAG 1 cut(s) 951
AfaI GTAC 1 cut(s) 28
AjuI GAANNNNNNNTTGG 4 cut(s) 86, 118, 474, 506
AluBI AGCT 9 cut(s) 65, 128, 149, 353, 472, 515, 552, 661, 768
AluI AGCT 9 cut(s) 65, 128, 149, 353, 472, 515, 552, 661, 768
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 2 cut(s) 459, 501
ApeKI GCWGC 3 cut(s) 206, 350, 472
ApoI RAATTY 1 cut(s) 760
Asp700I GAANNNNTTC 1 cut(s) 568
AspS9I GGNCC 2 cut(s) 106, 335
AsuHPI GGTGA 2 cut(s) 905, 932
AvaII GGWCC 2 cut(s) 106, 335
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 3 cut(s) 193, 362, 459
BccI CCATC 2 cut(s) 673, 770
BclI TGATCA 1 cut(s) 937
BcoDI GTCTC 2 cut(s) 459, 501
BfaI CTAG 2 cut(s) 744, 771
BisI GCNGC 3 cut(s) 207, 351, 473
BlsI GCNGC 3 cut(s) 208, 352, 474
Bme18I GGWCC 2 cut(s) 106, 335
BmgT120I GGNCC 2 cut(s) 106, 335
BmiI GGNNCC 2 cut(s) 171, 831
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 1 cut(s) 980
BmuI ACTGGG 1 cut(s) 666
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 2 cut(s) 31, 248
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 164, 481
Bse1I ACTGG 2 cut(s) 287, 672
BseDI CCNNGG 2 cut(s) 164, 481
BseGI GGATG 2 cut(s) 665, 781
BseMII CTCAG 3 cut(s) 132, 143, 345
BseNI ACTGG 2 cut(s) 287, 672
BseRI GAGGAG 2 cut(s) 881, 884
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 3 cut(s) 193, 362, 459
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 517
BsmAI GTCTC 2 cut(s) 459, 501
BsmI GAATGC 1 cut(s) 534
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 172, 517
Bsp143I GATC 3 cut(s) 87, 646, 937
BspCNI CTCAG 3 cut(s) 133, 142, 346
BspLI GGNNCC 2 cut(s) 171, 831
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 501
BsrI ACTGG 2 cut(s) 287, 672
BssECI CCNNGG 2 cut(s) 164, 481
BssMI GATC 3 cut(s) 87, 646, 937
BssT1I CCWWGG 1 cut(s) 481
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 4 cut(s) 129, 141, 354, 789
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 665, 781
BstKTI GATC 3 cut(s) 90, 649, 940
BstMAI GTCTC 2 cut(s) 459, 501
BstMBI GATC 3 cut(s) 87, 646, 937
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 3 cut(s) 193, 362, 459
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 2 cut(s) 665, 781
BtsIMutI CAGTG 2 cut(s) 28, 955
Cac8I GCNNGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 106, 335
Csp6I GTAC 1 cut(s) 27
CspCI CAANNNNNGTGG 4 cut(s) 4, 39, 219, 254
CviAII CATG 2 cut(s) 332, 641
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 4 cut(s) 129, 141, 354, 789
DpnI GATC 3 cut(s) 89, 648, 939
DpnII GATC 3 cut(s) 87, 646, 937
DraI TTTAAA 1 cut(s) 817
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 517
Eco31I GGTCTC 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 106, 335
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 1 cut(s) 951
EcoICRI GAGCTC 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 760
EcoT14I CCWWGG 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 2 cut(s) 335, 644
FaiI YATR 7 cut(s) 295, 333, 407, 603, 610, 612, 642
FalI AAGNNNNNCTT 4 cut(s) 193, 225, 958, 990
FatI CATG 2 cut(s) 331, 640
FauNDI CATATG 1 cut(s) 610
FbaI TGATCA 1 cut(s) 937
Fnu4HI GCNGC 3 cut(s) 207, 351, 473
FokI GGATG 2 cut(s) 652, 788
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 3 cut(s) 207, 351, 473
FspBI CTAG 2 cut(s) 744, 771
GluI GCNGC 3 cut(s) 207, 351, 473
GsuI CTGGAG 1 cut(s) 304
Hin1II CATG 2 cut(s) 335, 644
HincII GTYRAC 3 cut(s) 327, 367, 637
HindII GTYRAC 3 cut(s) 327, 367, 637
HindIII AAGCTT 2 cut(s) 63, 550
HinfI GANTC 6 cut(s) 258, 328, 593, 707, 740, 908
HphI GGTGA 2 cut(s) 905, 932
Hpy166II GTNNAC 3 cut(s) 327, 367, 637
Hpy188I TCNGA 3 cut(s) 447, 459, 628
Hpy188III TCNNGA 4 cut(s) 10, 91, 650, 912
Hpy8I GTNNAC 3 cut(s) 327, 367, 637
HpyAV CCTTC 2 cut(s) 79, 609
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 250, 350, 441, 971
HpyF3I CTNAG 4 cut(s) 129, 141, 354, 789
Hsp92II CATG 2 cut(s) 335, 644
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 3 cut(s) 87, 646, 937
Lsp1109I GCAGC 3 cut(s) 193, 362, 459
LweI GCATC 1 cut(s) 980
MaeI CTAG 2 cut(s) 744, 771
MaeIII GTNAC 2 cut(s) 118, 950
MalI GATC 3 cut(s) 89, 648, 939
MboI GATC 3 cut(s) 87, 646, 937
MboII GAAGA 8 cut(s) 67, 97, 512, 561, 656, 695, 944, 966
MfeI CAATTG 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 172, 517
MlyI GAGTC 3 cut(s) 322, 734, 917
MnlI CCTC 9 cut(s) 119, 136, 272, 279, 355, 386, 524, 859, 862
MroXI GAANNNNTTC 1 cut(s) 568
MseI TTAA 4 cut(s) 45, 587, 816, 876
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 353
MunI CAATTG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 534
NdeI CATATG 1 cut(s) 610
NdeII GATC 3 cut(s) 87, 646, 937
NlaIII CATG 2 cut(s) 335, 644
NlaIV GGNNCC 2 cut(s) 171, 831
NmuCI GTSAC 1 cut(s) 950
PctI GAATGC 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 568
PfeI GAWTC 3 cut(s) 258, 593, 707
PflFI GACNNNGTC 1 cut(s) 632
PkrI GCNGC 3 cut(s) 208, 352, 474
PleI GAGTC 3 cut(s) 322, 734, 916
PpsI GAGTC 3 cut(s) 322, 734, 916
Psp124BI GAGCTC 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 171, 831
PspPI GGNCC 2 cut(s) 106, 335
PsyI GACNNNGTC 1 cut(s) 632
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 4 cut(s) 45, 587, 816, 876
SatI GCNGC 3 cut(s) 207, 351, 473
Sau3AI GATC 3 cut(s) 87, 646, 937
Sau96I GGNCC 2 cut(s) 106, 335
SchI GAGTC 3 cut(s) 322, 734, 917
SduI GDGCHC 2 cut(s) 172, 517
SfaNI GCATC 1 cut(s) 980
SinI GGWCC 2 cut(s) 106, 335
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 10, 263
SmoI CTYRAG 2 cut(s) 10, 263
SspI AATATT 1 cut(s) 465
SspMI CTAG 2 cut(s) 744, 771
SstI GAGCTC 1 cut(s) 517
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 4 cut(s) 219, 517, 710, 805
TaqII GACCGA 1 cut(s) 525
TfiI GAWTC 3 cut(s) 258, 593, 707
Tru1I TTAA 4 cut(s) 45, 587, 816, 876
Tru9I TTAA 4 cut(s) 45, 587, 816, 876
TscAI CASTG 2 cut(s) 28, 955
TseFI GTSAC 1 cut(s) 950
TseI GCWGC 3 cut(s) 206, 350, 472
Tsp45I GTSAC 1 cut(s) 950
TspDTI ATGAA 4 cut(s) 63, 618, 657, 738
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 2 cut(s) 28, 955
Tth111I GACNNNGTC 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 106, 335
XapI RAATTY 1 cut(s) 760
XmnI GAANNNNTTC 1 cut(s) 568
XspI CTAG 2 cut(s) 744, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.