FvH4_7g22420

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003209
Physical Location & Seq
Reverse (-)
17674775 .. 17676299
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22420.t1

Sequence Viewer

Length: 828 bp
ATGATGGTCAATGTTCAAAACAGCAACAGAAACATGAGCAGTCCTTTGTTCTATGAACTGAAGAAGCAAGCCTCTTCCTTCTTGAAAGAGAAGATCAAAACTGCACGCCTAGCGCTGACTGATGTAACACCTGCAGAGATAATGACAGAAGAAGCTACAGATGAAAATTCATGGCCACCAGACACACGTACCATTGGGGTAATATCCAGGGCTGCCTTCGAGGTTGATGATTACTGTAGGATTGTGGAGATTCTGCATAGGAGGTTGTTGAACTTGGACAGAAAGAACTGGCGAGGCTCTTACAAGGCTCTAATTCTGTTGGAATACCTTCTAAGCCATGGACCATTGAGACTTGCTGAGGAGTTTGAGGATGATATCGATGTTATCAAGCAGATGGGAAGGTTTCAGCATATTGATGAGAAAGGGTTTGACTGGGGCTTGAGTGTGAGGAAGTTATCTGATAGAGTGCTCAAGCTTCTTGGAGACACTGTATTTCTCAAAGAAGAGAGAGCCAGAGCTCGCAATCTTACTCGTGGTATACAAGGGTTTGGGAGCTTCAACCAGCACCATTCTTCCTTCACAGATTCAAGCTTGAAGGAGCTCTATCCTAAAACGTATGAGAGGAGTAATTCACACTACAATGATCATCAGAGTCGGGAAGATAAGTCGTTTGACTTGAATGGGCATTTGTTGGTGAAGAAACAACTGCAAATTGGTGATCAAGACATCATCTCATTGAAACCTGAAATGAATCTCGACACAGGGGATCACCCATTTTGCAAGAATGAGCATCAGAAGGAAGAATCCCTTCTTTCTTCTGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

276

Amino Acids

31.92

Weight (kDa)

5.97

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 43 - 163 1.8e-30 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
Acc36I ACCTGC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 538
AclWI GGATC 1 cut(s) 774
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 1 cut(s) 190
AfeI AGCGCT 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 8 cut(s) 17, 85, 271, 559, 588, 595, 679, 739
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 6 cut(s) 155, 475, 518, 555, 591, 601
AluI AGCT 6 cut(s) 155, 475, 518, 555, 591, 601
Alw21I GWGCWC 3 cut(s) 471, 520, 603
Alw26I GTCTC 2 cut(s) 343, 477
AlwI GGATC 1 cut(s) 774
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 166
Asp700I GAANNNNTTC 2 cut(s) 327, 807
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 706, 728, 761
AvaII GGWCC 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BalI TGGCCA 1 cut(s) 175
BanII GRGCYC 2 cut(s) 520, 603
BauI CACGAG 1 cut(s) 531
Bbv12I GWGCWC 3 cut(s) 471, 520, 603
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 2 cut(s) 643, 718
BcoDI GTCTC 2 cut(s) 343, 477
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 3 cut(s) 132, 156, 235
BfoI RGCGCY 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 799
BmuI ACTGGG 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 2 cut(s) 455, 460
Bsa29I ATCGAT 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 207, 337
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bse1I ACTGG 2 cut(s) 293, 437
BseBI CCWGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 207, 337
BseGI GGATG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 293, 437
BseRI GAGGAG 2 cut(s) 374, 637
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 3 cut(s) 471, 520, 603
BsmAI GTCTC 2 cut(s) 343, 477
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 3 cut(s) 471, 520, 603
Bsp143I GATC 4 cut(s) 93, 643, 718, 766
Bsp19I CCATGG 1 cut(s) 337
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 349
BspDI ATCGAT 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 1 cut(s) 774
BsrI ACTGG 2 cut(s) 293, 437
BssECI CCNNGG 2 cut(s) 207, 337
BssMI GATC 4 cut(s) 93, 643, 718, 766
BssNAI GTATAC 1 cut(s) 539
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 337
Bst1107I GTATAC 1 cut(s) 539
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 236, 490
Bst6I CTCTTC 2 cut(s) 79, 498
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 3 cut(s) 69, 106, 520
BstDEI CTNAG 2 cut(s) 332, 357
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 4 cut(s) 96, 646, 721, 769
BstMAI GTCTC 2 cut(s) 343, 477
BstMBI GATC 4 cut(s) 93, 643, 718, 766
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 3 cut(s) 132, 156, 235
BstV1I GCAGC 1 cut(s) 199
BstZ17I GTATAC 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 378
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 486
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 69, 106, 520
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 378
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 34, 171, 338
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 332, 357
DpnI GATC 4 cut(s) 95, 645, 720, 768
DpnII GATC 4 cut(s) 93, 643, 718, 766
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 2 cut(s) 79, 498
EarI CTCTTC 2 cut(s) 79, 498
Ecl136II GAGCTC 2 cut(s) 518, 601
Eco130I CCWWGG 1 cut(s) 337
Eco24I GRGCYC 2 cut(s) 520, 603
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 341
Eco47III AGCGCT 1 cut(s) 114
Eco53kI GAGCTC 2 cut(s) 518, 601
Eco57I CTGAAG 1 cut(s) 80
EcoICRI GAGCTC 2 cut(s) 518, 601
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 337
EcoT38I GRGCYC 2 cut(s) 520, 603
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 3 cut(s) 37, 174, 341
FaiI YATR 8 cut(s) 35, 54, 172, 258, 339, 411, 539, 618
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FatI CATG 3 cut(s) 33, 170, 337
FbaI TGATCA 2 cut(s) 643, 718
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 2 cut(s) 520, 603
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 175
HhaI GCGC 1 cut(s) 115
Hin1II CATG 3 cut(s) 37, 174, 341
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 2 cut(s) 473, 589
HinfI GANTC 5 cut(s) 250, 584, 652, 751, 803
HphI GGTGA 3 cut(s) 706, 728, 761
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 4 cut(s) 460, 651, 795, 820
Hpy188III TCNNGA 4 cut(s) 82, 656, 722, 755
Hpy8I GTNNAC 1 cut(s) 539
HpyAV CCTTC 8 cut(s) 88, 226, 338, 393, 586, 589, 790, 818
HpyCH4III ACNGT 2 cut(s) 236, 490
HpyCH4IV ACGT 2 cut(s) 187, 614
HpyCH4V TGCA 5 cut(s) 104, 134, 256, 709, 780
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 332, 357
HpySE526I ACGT 2 cut(s) 187, 614
Hsp92II CATG 3 cut(s) 37, 174, 341
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 2 cut(s) 643, 718
Kzo9I GATC 4 cut(s) 93, 643, 718, 766
LmnI GCTCC 2 cut(s) 552, 598
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 799
MaeI CTAG 1 cut(s) 110
MaeII ACGT 2 cut(s) 187, 614
MaeIII GTNAC 1 cut(s) 124
MalI GATC 4 cut(s) 95, 645, 720, 768
MboI GATC 4 cut(s) 93, 643, 718, 766
MhlI GDGCHC 3 cut(s) 471, 520, 603
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 4 cut(s) 166, 312, 628, 711
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 1 cut(s) 661
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 8 cut(s) 82, 214, 255, 287, 352, 361, 441, 615
Mox20I TGGCCA 1 cut(s) 175
MroXI GAANNNNTTC 2 cut(s) 327, 807
MscI TGGCCA 1 cut(s) 175
MslI CAYNNNNRTG 2 cut(s) 414, 639
Msp20I TGGCCA 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 110
NcoI CCATGG 1 cut(s) 337
NdeII GATC 4 cut(s) 93, 643, 718, 766
NlaIII CATG 3 cut(s) 37, 174, 341
PaqCI CACCTGC 1 cut(s) 139
PdmI GAANNNNTTC 2 cut(s) 327, 807
PfeI GAWTC 4 cut(s) 250, 584, 751, 803
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 660
PpsI GAGTC 1 cut(s) 660
Ppu21I YACGTR 1 cut(s) 188
Psp124BI GAGCTC 2 cut(s) 520, 603
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspPI GGNCC 1 cut(s) 341
PstI CTGCAG 1 cut(s) 136
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 2 cut(s) 414, 639
SacI GAGCTC 2 cut(s) 520, 603
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 4 cut(s) 93, 643, 718, 766
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 1 cut(s) 661
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 3 cut(s) 471, 520, 603
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 3 cut(s) 132, 156, 235
SinI GGWCC 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 414, 639
SmlI CTYRAG 2 cut(s) 439, 470
SmoI CTYRAG 2 cut(s) 439, 470
Sse9I AATT 4 cut(s) 166, 312, 628, 711
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 2 cut(s) 520, 603
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 2 cut(s) 236, 490
TaiI ACGT 2 cut(s) 190, 617
TaqI TCGA 3 cut(s) 219, 378, 756
TasI AATT 4 cut(s) 166, 312, 628, 711
TfiI GAWTC 4 cut(s) 250, 584, 751, 803
TscAI CASTG 1 cut(s) 493
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 69, 159, 177, 764
TspRI CASTG 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 538
XmnI GAANNNNTTC 2 cut(s) 327, 807
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.