Rroxscaffold_4G00289670

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003209
Physical Location & Seq
Forward (+)
10229785 .. 10230977
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289670.1

Sequence Viewer

Length: 876 bp
ATGATGGCGGTCAATGTTCAAAACACAAACAGCAGGATGAGTAGTCCTTTGTTCTATGAATTGAAGAAGCAAGCCTCTTCCTTCTTGAAAGAGAAGATCAAAACTGTGCGTCTGGCACTGACTGATGTAACACCTGCAGAGCTAATGACAGAAGAAGCTACAAATGAAAATTCATGGCCCCCAGACACACGTACCATTGGGGTAATATCCAGAGCTGCCTTTGACGTTGATGATTACTGGAGGATTGCGGAGATTCTGCATAGGAGGTTGTCGAACTTTGATAGAAAGAACTGGCGAGGCTCTTACAAGGCTCTAATTCTATTGGAATACCTTCTAAGCCATGGACCATTGAGACTTGCTGAGGAGTTTGAGGTTGATATCGATGTTATCAAGCAGATGGGAAGGTTTCAGCACATTGATGAAAAAGGGTTAGCACATTTGTATTCTGGATTCACATCGCTCTATTTGAATGTCATATTTAACTGGGGCATGAGTGTGAGGAAGTTATCTGATAGAGTGCTCAAGCTTCTTGGAGACACTGTGTTTCTTAAAGCAGAGAGAGCCAGAGCTCGTAATCTAACTCGTGGAATACAAGGGTTCGGGAGCTTCAGTCAGCAGCATTCTTTCACAGATTCAAGCTTCAAGGAGCTATCTCGTAAAACGTATGAGAGGTGCAATTCACACTACGCTGATCATCAGAGTCAGCAAGATAAGTCATTTGATTTGAAGGAGAATTTCTTGGTGAAAAAAAAACCACAGATTGGTGATCAAGACATCATCTCATCGAAACCTGAAATGAATCTCAACATAGGGGATCACCCATTTTGCAAGAATGAGCATCAGAAGGAAGAATCCCTTCTTTCTTCTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

291

Amino Acids

33.68

Weight (kDa)

7.78

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 44 - 144 8.2e-24 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 142
AccB7I CCANNNNNTGG 1 cut(s) 761
AciI CCGC 2 cut(s) 8, 248
AclWI GGATC 1 cut(s) 822
AcsI RAATTY 2 cut(s) 169, 733
AcuI CTGAAG 1 cut(s) 592
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 7 cut(s) 20, 64, 88, 469, 636, 643, 727
AluBI AGCT 8 cut(s) 142, 158, 215, 526, 569, 606, 639, 649
AluI AGCT 8 cut(s) 142, 158, 215, 526, 569, 606, 639, 649
Alw21I GWGCWC 2 cut(s) 522, 571
Alw26I GTCTC 2 cut(s) 346, 528
AlwI GGATC 1 cut(s) 822
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 215, 616
ApoI RAATTY 2 cut(s) 169, 733
Asp700I GAANNNNTTC 2 cut(s) 330, 855
AspS9I GGNCC 2 cut(s) 177, 344
AsuHPI GGTGA 3 cut(s) 754, 776, 809
AvaII GGWCC 1 cut(s) 344
BaeI ACNNNNGTAYC 2 cut(s) 175, 208
BanII GRGCYC 1 cut(s) 571
BauI CACGAG 1 cut(s) 582
Bbv12I GWGCWC 2 cut(s) 522, 571
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 202, 628
BccI CCATC 1 cut(s) 391
BclI TGATCA 2 cut(s) 691, 766
BcoDI GTCTC 2 cut(s) 346, 528
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 2 cut(s) 216, 617
BlsI GCNGC 2 cut(s) 217, 618
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 177, 344
BmiI GGNNCC 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 1 cut(s) 847
BmuI ACTGGG 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 506
Bsa29I ATCGAT 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 340
BsaXI ACNNNNNCTCC 4 cut(s) 525, 555, 595, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 3 cut(s) 242, 296, 488
Bse8I GATNNNNATC 1 cut(s) 454
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 3 cut(s) 242, 296, 488
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 202, 628
BshFI GGCC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 522, 571
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 2 cut(s) 346, 528
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 522, 571
Bsp143I GATC 4 cut(s) 96, 691, 766, 814
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 2 cut(s) 8, 248
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 352
BspDI ATCGAT 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 1 cut(s) 822
BsrI ACTGG 3 cut(s) 242, 296, 488
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 4 cut(s) 96, 691, 766, 814
BssSI CACGAG 1 cut(s) 582
BssT1I CCWWGG 1 cut(s) 340
Bst2BI CACGAG 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 106, 541
Bst6I CTCTTC 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 335, 360
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 4 cut(s) 99, 694, 769, 817
BstMAI GTCTC 2 cut(s) 346, 528
BstMBI GATC 4 cut(s) 96, 691, 766, 814
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 202, 628
Bsu15I ATCGAT 1 cut(s) 381
BsuRI GGCC 1 cut(s) 178
BsuTUI ATCGAT 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 116, 537
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 2 cut(s) 177, 344
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 192
CviAII CATG 3 cut(s) 174, 341, 490
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 2 cut(s) 335, 360
DpnI GATC 4 cut(s) 98, 693, 768, 816
DpnII GATC 4 cut(s) 96, 691, 766, 814
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 571
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 344
Eco53kI GAGCTC 1 cut(s) 569
Eco57I CTGAAG 1 cut(s) 592
EcoICRI GAGCTC 1 cut(s) 569
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 3 cut(s) 177, 344, 493
FaiI YATR 8 cut(s) 57, 175, 261, 342, 476, 491, 666, 809
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FatI CATG 3 cut(s) 173, 340, 489
FbaI TGATCA 2 cut(s) 691, 766
Fnu4HI GCNGC 2 cut(s) 216, 617
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 2 cut(s) 216, 617
GluI GCNGC 2 cut(s) 216, 617
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 1 cut(s) 178
HgaI GACGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 177, 344, 493
HindIII AAGCTT 2 cut(s) 524, 637
HinfI GANTC 6 cut(s) 253, 450, 632, 700, 799, 851
HphI GGTGA 3 cut(s) 754, 776, 809
Hpy188I TCNGA 4 cut(s) 511, 699, 843, 868
Hpy188III TCNNGA 5 cut(s) 85, 210, 447, 601, 770
HpyAV CCTTC 6 cut(s) 91, 341, 396, 721, 838, 866
HpyCH4III ACNGT 2 cut(s) 106, 541
HpyCH4IV ACGT 3 cut(s) 190, 225, 662
HpyCH4V TGCA 4 cut(s) 137, 259, 675, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 2 cut(s) 335, 360
HpySE526I ACGT 3 cut(s) 190, 225, 662
Hsp92II CATG 3 cut(s) 177, 344, 493
Ksp22I TGATCA 2 cut(s) 691, 766
Kzo9I GATC 4 cut(s) 96, 691, 766, 814
LmnI GCTCC 2 cut(s) 603, 646
Lsp1109I GCAGC 2 cut(s) 202, 628
LweI GCATC 1 cut(s) 847
MaeII ACGT 3 cut(s) 190, 225, 662
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 98, 693, 768, 816
MboI GATC 4 cut(s) 96, 691, 766, 814
MboII GAAGA 6 cut(s) 69, 76, 106, 164, 855, 860
MhlI GDGCHC 2 cut(s) 522, 571
MluCI AATT 5 cut(s) 59, 169, 315, 676, 733
MlyI GAGTC 1 cut(s) 709
MnlI CCTC 8 cut(s) 85, 234, 258, 290, 355, 364, 492, 663
MroXI GAANNNNTTC 2 cut(s) 330, 855
MseI TTAA 2 cut(s) 480, 549
MslI CAYNNNNRTG 2 cut(s) 417, 494
Mva1269I GAATGC 1 cut(s) 619
MwoI GCNNNNNNNGC 1 cut(s) 560
NcoI CCATGG 1 cut(s) 340
NdeII GATC 4 cut(s) 96, 691, 766, 814
NlaIII CATG 3 cut(s) 177, 344, 493
NlaIV GGNNCC 1 cut(s) 179
PaqCI CACCTGC 1 cut(s) 142
PctI GAATGC 1 cut(s) 619
PdmI GAANNNNTTC 2 cut(s) 330, 855
PfeI GAWTC 5 cut(s) 253, 450, 632, 799, 851
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 2 cut(s) 217, 618
PleI GAGTC 1 cut(s) 708
PpsI GAGTC 1 cut(s) 708
Ppu21I YACGTR 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 571
PspN4I GGNNCC 1 cut(s) 179
PspPI GGNCC 2 cut(s) 177, 344
PstI CTGCAG 1 cut(s) 139
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
RseI CAYNNNNRTG 2 cut(s) 417, 494
SacI GAGCTC 1 cut(s) 571
SaqAI TTAA 2 cut(s) 480, 549
SatI GCNGC 2 cut(s) 216, 617
Sau3AI GATC 4 cut(s) 96, 691, 766, 814
Sau96I GGNCC 2 cut(s) 177, 344
SchI GAGTC 1 cut(s) 709
SduI GDGCHC 2 cut(s) 522, 571
SfaNI GCATC 1 cut(s) 847
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 2 cut(s) 417, 494
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 5 cut(s) 59, 169, 315, 676, 733
SsiI CCGC 2 cut(s) 8, 248
SstI GAGCTC 1 cut(s) 571
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 106, 541
TaiI ACGT 3 cut(s) 193, 228, 665
TaqI TCGA 3 cut(s) 272, 381, 785
TasI AATT 5 cut(s) 59, 169, 315, 676, 733
TfiI GAWTC 5 cut(s) 253, 450, 632, 799, 851
Tru1I TTAA 2 cut(s) 480, 549
Tru9I TTAA 2 cut(s) 480, 549
TscAI CASTG 2 cut(s) 123, 544
TseI GCWGC 2 cut(s) 215, 616
TspDTI ATGAA 5 cut(s) 72, 162, 180, 435, 812
TspRI CASTG 2 cut(s) 123, 544
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 2 cut(s) 169, 733
XmnI GAANNNNTTC 2 cut(s) 330, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.