Rw0G023860

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01103
OG0003209
Physical Location & Seq
Forward (+)
3068 .. 4208
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023860.1

Sequence Viewer

Length: 792 bp
ATGAGCAGTCCTTTGTTCTATGAATTGAAGAAGCAAGCCTCTTCCTTCTTAAAAGAGAAGATCAGAACTGCGCGTCTGGCGCTGACTGATGTAACACCTGCAGAGCTAATGACAGAAGAAGCTACAAATGAAAATTCATGGCCACCAGACACACGTACCATTGGGGTAATATCCAGGGCTGCCTTTGACGTTGATGATTACTGGAGGATTGTGGAGATTCTGCATAGGAGGTTGTCGAACTTTGATAGAAAGAATTGGCGAGGCTCTTACAAGGCTCTAATTCTATTGGAATACCTTCTAAGCCATGGACCATTGAGACTTGCTGAGGAGTTTGAGGTTGATATCGATGTTATCAAGCAGATGGGAAGGTTTCAGCACATTGATGAAAAAGGATTTAACTGGGGCATGAGTGTGAGGAAGTTATCTGATAGAGTGCTCAAGCTTCTTGGAGACACTGTGTTTCTTAAAGAAGAGAGAGCCAGAGCTCGTAATCTAACTCGTGGAATACAAGGGTTCGGGAGCTTCAGTCAGCAGCATTCTCTCACAGATTCAAGCTTCAAGGAGCTATCTCGTAAAACGTATGAGAGGTGCAATTCACACTACACTGATCATCAGAGTCAGGAAGATAAGTCATTTGACTTAAAGGAGAATTTCTTGGTGAAGAAACAACCGCCGATTGGTGATCAAGACATCATCTCATCGAAACCTGAAATGAATCTCAACATAGGGGATCACCCATTTTGCAAGAATGAGCATCAGAGGGAAGAATCCCTTCTTTCTTCTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

263

Amino Acids

30.62

Weight (kDa)

6.27

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 32 - 152 6.8e-31 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 106
AccII CGCG 1 cut(s) 73
AciI CCGC 1 cut(s) 671
AclWI GGATC 1 cut(s) 738
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 2 cut(s) 133, 649
AcuI CTGAAG 1 cut(s) 508
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 3 cut(s) 28, 552, 559
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 7 cut(s) 106, 122, 442, 485, 522, 555, 565
AluI AGCT 7 cut(s) 106, 122, 442, 485, 522, 555, 565
Alw21I GWGCWC 2 cut(s) 438, 487
Alw26I GTCTC 2 cut(s) 310, 444
AlwI GGATC 1 cut(s) 738
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 179, 532
ApoI RAATTY 2 cut(s) 133, 649
Asp700I GAANNNNTTC 2 cut(s) 294, 771
AspLEI GCGC 2 cut(s) 73, 82
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 670, 692, 725
AvaII GGWCC 1 cut(s) 308
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BalI TGGCCA 1 cut(s) 142
BanII GRGCYC 1 cut(s) 487
BauI CACGAG 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 438, 487
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 166, 544
BccI CCATC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 175
BclI TGATCA 2 cut(s) 607, 682
BcoDI GTCTC 2 cut(s) 310, 444
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 2 cut(s) 180, 533
BlsI GCNGC 2 cut(s) 181, 534
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 175
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 763
BmuI ACTGGG 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 174, 304
BsaXI ACNNNNNCTCC 4 cut(s) 441, 471, 511, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse1I ACTGG 2 cut(s) 206, 404
BseBI CCWGG 1 cut(s) 175
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 174, 304
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 206, 404
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 2 cut(s) 166, 544
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 142
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 438, 487
BslI CCNNNNNNNGG 1 cut(s) 677
BsmAI GTCTC 2 cut(s) 310, 444
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 1 cut(s) 142
Bsp1286I GDGCHC 2 cut(s) 438, 487
Bsp143I GATC 4 cut(s) 60, 607, 682, 730
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 1 cut(s) 671
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 345
BspFNI CGCG 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 1 cut(s) 738
BsrI ACTGG 2 cut(s) 206, 404
BssECI CCNNGG 2 cut(s) 174, 304
BssMI GATC 4 cut(s) 60, 607, 682, 730
BssSI CACGAG 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 2 cut(s) 46, 465
BstBAI YACGTR 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 299, 324
BstDSI CCRYGG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 2 cut(s) 73, 82
BstKTI GATC 4 cut(s) 63, 610, 685, 733
BstMAI GTCTC 2 cut(s) 310, 444
BstMBI GATC 4 cut(s) 60, 607, 682, 730
BstMWI GCNNNNNNNGC 2 cut(s) 77, 79
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 166, 544
Bsu15I ATCGAT 1 cut(s) 345
BsuRI GGCC 1 cut(s) 142
BsuTUI ATCGAT 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 453, 603
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 2 cut(s) 73, 82
Cfr13I GGNCC 1 cut(s) 308
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 156
CviAII CATG 3 cut(s) 138, 305, 406
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 299, 324
DpnI GATC 4 cut(s) 62, 609, 684, 732
DpnII GATC 4 cut(s) 60, 607, 682, 730
EaeI YGGCCR 1 cut(s) 140
Eam1104I CTCTTC 2 cut(s) 46, 465
EarI CTCTTC 2 cut(s) 46, 465
Ecl136II GAGCTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 487
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 173
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 141, 308, 409
FaiI YATR 7 cut(s) 21, 139, 225, 306, 407, 582, 725
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FatI CATG 3 cut(s) 137, 304, 405
FbaI TGATCA 2 cut(s) 607, 682
Fnu4HI GCNGC 2 cut(s) 180, 533
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 2 cut(s) 180, 533
GlaI GCGC 2 cut(s) 72, 81
GluI GCNGC 2 cut(s) 180, 533
GsuI CTGGAG 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 1 cut(s) 142
HgaI GACGC 1 cut(s) 62
HhaI GCGC 2 cut(s) 73, 82
Hin1II CATG 3 cut(s) 141, 308, 409
Hin6I GCGC 2 cut(s) 71, 80
HinP1I GCGC 2 cut(s) 71, 80
HindIII AAGCTT 2 cut(s) 440, 553
HinfI GANTC 5 cut(s) 217, 548, 616, 715, 767
HphI GGTGA 3 cut(s) 670, 692, 725
Hpy188I TCNGA 5 cut(s) 65, 427, 615, 759, 784
Hpy188III TCNNGA 3 cut(s) 517, 620, 686
HpyAV CCTTC 4 cut(s) 55, 305, 360, 782
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 3 cut(s) 154, 189, 578
HpyCH4V TGCA 4 cut(s) 101, 223, 591, 744
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 79
HpyF3I CTNAG 2 cut(s) 299, 324
HpySE526I ACGT 3 cut(s) 154, 189, 578
Hsp92II CATG 3 cut(s) 141, 308, 409
HspAI GCGC 2 cut(s) 71, 80
Ksp22I TGATCA 2 cut(s) 607, 682
Kzo9I GATC 4 cut(s) 60, 607, 682, 730
LmnI GCTCC 2 cut(s) 519, 562
Lsp1109I GCAGC 2 cut(s) 166, 544
LweI GCATC 1 cut(s) 763
MaeII ACGT 3 cut(s) 154, 189, 578
MaeIII GTNAC 1 cut(s) 91
MalI GATC 4 cut(s) 62, 609, 684, 732
MboI GATC 4 cut(s) 60, 607, 682, 730
MboII GAAGA 9 cut(s) 33, 40, 70, 128, 482, 635, 673, 771, 776
MhlI GDGCHC 2 cut(s) 438, 487
MlsI TGGCCA 1 cut(s) 142
MluCI AATT 6 cut(s) 23, 133, 253, 279, 592, 649
MluNI TGGCCA 1 cut(s) 142
MlyI GAGTC 1 cut(s) 625
MnlI CCTC 9 cut(s) 49, 198, 222, 254, 319, 328, 408, 579, 753
Mox20I TGGCCA 1 cut(s) 142
MroXI GAANNNNTTC 2 cut(s) 294, 771
MscI TGGCCA 1 cut(s) 142
MseI TTAA 4 cut(s) 50, 396, 465, 641
MslI CAYNNNNRTG 2 cut(s) 381, 410
Msp20I TGGCCA 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 77, 79
NcoI CCATGG 1 cut(s) 304
NdeII GATC 4 cut(s) 60, 607, 682, 730
NlaIII CATG 3 cut(s) 141, 308, 409
PaqCI CACCTGC 1 cut(s) 106
PctI GAATGC 1 cut(s) 535
PdmI GAANNNNTTC 2 cut(s) 294, 771
PfeI GAWTC 4 cut(s) 217, 548, 715, 767
PkrI GCNGC 2 cut(s) 181, 534
PleI GAGTC 1 cut(s) 624
PpsI GAGTC 1 cut(s) 624
Ppu21I YACGTR 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspPI GGNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 103
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 2 cut(s) 381, 410
SacI GAGCTC 1 cut(s) 487
SaqAI TTAA 4 cut(s) 50, 396, 465, 641
SatI GCNGC 2 cut(s) 180, 533
Sau3AI GATC 4 cut(s) 60, 607, 682, 730
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 625
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 2 cut(s) 438, 487
SfaNI GCATC 1 cut(s) 763
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 381, 410
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 6 cut(s) 23, 133, 253, 279, 592, 649
SsiI CCGC 1 cut(s) 671
SstI GAGCTC 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 3 cut(s) 157, 192, 581
TaqI TCGA 3 cut(s) 236, 345, 701
TasI AATT 6 cut(s) 23, 133, 253, 279, 592, 649
TfiI GAWTC 4 cut(s) 217, 548, 715, 767
Tru1I TTAA 4 cut(s) 50, 396, 465, 641
Tru9I TTAA 4 cut(s) 50, 396, 465, 641
TscAI CASTG 2 cut(s) 460, 610
TseI GCWGC 2 cut(s) 179, 532
TspDTI ATGAA 5 cut(s) 36, 126, 144, 399, 728
TspRI CASTG 2 cut(s) 460, 610
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 2 cut(s) 133, 649
XmnI GAANNNNTTC 2 cut(s) 294, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.