Rh5AG422300

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003209
Physical Location & Seq
Reverse (-)
72923762 .. 72925873
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG422300.1

Sequence Viewer

Length: 771 bp
ATGCTTCTCATCTATGATGATTTGGTTAAGTATTCATCAGATTCAATTACTTATAATTGCATCAGATTCCTCAAGTTTGAGAGAAAGGACTGGAGGGTATCATACAATTCTCTGATTGTGCTTGAAAACTTGTTGACTCATGGACCAGAGAGTGTTGCAGATGAGTTTGAGGTTGACAAAGGTGTTATTGAACAGATGGGAGGCTTTCAGCACATAGATGAGAAAGGATTCAATTGGGGTCTTGCAGTTAGAAAAAAGTCTCTGAGAATATTGAAGCTGCTACACCAAGGAAACTTTCTCAAAGAAGAGAGACACCGAGCTCGAAAACTAACAAGAGGCATTCAAGGATTTGGAAGCTTTTGCCAGAGAACATCTTCGGCACAAGGCATTTTAAGAGAATCATCGTATGAAACATATGGAAGGTCTAATTCTGACTTCGTCAACCATGAAGATCAAGAAAATCAGCTACCATCCCCCAGTATTGAAGATTTACCAAAGAAATTAGTAGAATCGAAGCAGAATAATGAAAGCGTAAGCACCGACTCTAGCAAGGAAGCAGGGAATTCAAGCTCTAGGGATGGTCTGGGAACAAGTTTTAAAGAAAACAAGGTTCCAAACAAGGAGGTATTAAATAAATGGAACTGCGAGGAGGAGTTTAACCCTCTTCTTTTGGGTGATAACAAAGATGAGTCCAGAATTGAACTTTCTACTGAAGATGATCACCCTTTCAGTGACACTAACAATCAAAGTGCATCTTCGTTGCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

256

Amino Acids

29.19

Weight (kDa)

5.3

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 22 - 99 3.6e-16 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AcsI RAATTY 1 cut(s) 562
AcuI CTGAAG 1 cut(s) 732
AgsI TTSAA 9 cut(s) 45, 125, 191, 232, 274, 344, 485, 567, 701
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 5 cut(s) 277, 320, 357, 466, 570
AluI AGCT 5 cut(s) 277, 320, 357, 466, 570
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 264, 304
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 562
Asp700I GAANNNNTTC 2 cut(s) 227, 373
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 686, 713
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 264
BccI CCATC 3 cut(s) 190, 478, 572
BclI TGATCA 1 cut(s) 718
BcoDI GTCTC 2 cut(s) 264, 304
BfaI CTAG 2 cut(s) 546, 573
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 612
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 69, 761
BmuI ACTGGG 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 95, 477
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 470, 583
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 95, 477
BseRI GAGGAG 2 cut(s) 662, 665
BseXI GCAGC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 264, 304
BsmI GAATGC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 451, 718
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 612
BsrI ACTGG 2 cut(s) 95, 477
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 2 cut(s) 451, 718
BssT1I CCWWGG 1 cut(s) 286
Bst6I CTCTTC 2 cut(s) 300, 669
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 470, 583
BstKTI GATC 2 cut(s) 454, 721
BstMAI GTCTC 2 cut(s) 264, 304
BstMBI GATC 2 cut(s) 451, 718
BstV1I GCAGC 1 cut(s) 264
BtsCI GGATG 2 cut(s) 470, 583
BtsIMutI CAGTG 1 cut(s) 736
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 2 cut(s) 140, 446
CviJI RGCY 6 cut(s) 204, 277, 320, 357, 466, 570
CviKI_1 RGCY 6 cut(s) 204, 277, 320, 357, 466, 570
DdeI CTNAG 1 cut(s) 263
DpnI GATC 2 cut(s) 453, 720
DpnII GATC 2 cut(s) 451, 718
DraI TTTAAA 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 300, 669
EarI CTCTTC 2 cut(s) 300, 669
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 143, 449
FalI AAGNNNNNCTT 2 cut(s) 739, 771
FatI CATG 2 cut(s) 139, 445
FauNDI CATATG 1 cut(s) 415
FbaI TGATCA 1 cut(s) 718
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 2 cut(s) 457, 590
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 2 cut(s) 546, 573
GluI GCNGC 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 112
Hin1II CATG 2 cut(s) 143, 449
HincII GTYRAC 3 cut(s) 135, 175, 442
HindII GTYRAC 3 cut(s) 135, 175, 442
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 8 cut(s) 41, 66, 136, 228, 398, 509, 542, 689
HphI GGTGA 2 cut(s) 686, 713
Hpy166II GTNNAC 3 cut(s) 135, 175, 442
Hpy188I TCNGA 5 cut(s) 40, 65, 114, 264, 433
Hpy188III TCNNGA 2 cut(s) 455, 693
Hpy8I GTNNAC 3 cut(s) 135, 175, 442
HpyAV CCTTC 1 cut(s) 414
HpyCH4V TGCA 4 cut(s) 60, 158, 245, 752
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 2 cut(s) 143, 449
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 2 cut(s) 451, 718
LpnPI CCDG 7 cut(s) 76, 159, 377, 490, 543, 569, 706
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 2 cut(s) 69, 761
MaeI CTAG 2 cut(s) 546, 573
MaeIII GTNAC 1 cut(s) 731
MalI GATC 2 cut(s) 453, 720
MboI GATC 2 cut(s) 451, 718
MboII GAAGA 7 cut(s) 317, 366, 461, 497, 656, 725, 747
MfeI CAATTG 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 8 cut(s) 45, 55, 106, 232, 427, 500, 562, 696
MlyI GAGTC 3 cut(s) 130, 536, 698
MnlI CCTC 9 cut(s) 80, 87, 163, 194, 329, 616, 640, 643, 672
MroXI GAANNNNTTC 2 cut(s) 227, 373
MseI TTAA 5 cut(s) 27, 392, 597, 629, 657
MslI CAYNNNNRTG 1 cut(s) 216
MunI CAATTG 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 339
NdeI CATATG 1 cut(s) 415
NdeII GATC 2 cut(s) 451, 718
NlaIII CATG 2 cut(s) 143, 449
NlaIV GGNNCC 1 cut(s) 612
NmuCI GTSAC 1 cut(s) 731
PctI GAATGC 1 cut(s) 339
PdmI GAANNNNTTC 2 cut(s) 227, 373
PfeI GAWTC 5 cut(s) 41, 66, 228, 398, 509
PflFI GACNNNGTC 1 cut(s) 437
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 3 cut(s) 130, 536, 697
PpsI GAGTC 3 cut(s) 130, 536, 697
PsiI TTATAA 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 322
SaqAI TTAA 5 cut(s) 27, 392, 597, 629, 657
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 2 cut(s) 451, 718
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 3 cut(s) 130, 536, 698
SduI GDGCHC 1 cut(s) 322
SfaNI GCATC 2 cut(s) 69, 761
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 8 cut(s) 45, 55, 106, 232, 427, 500, 562, 696
SspI AATATT 1 cut(s) 270
SspMI CTAG 2 cut(s) 546, 573
SstI GAGCTC 1 cut(s) 322
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 2 cut(s) 322, 512
TasI AATT 8 cut(s) 45, 55, 106, 232, 427, 500, 562, 696
TfiI GAWTC 5 cut(s) 41, 66, 228, 398, 509
Tru1I TTAA 5 cut(s) 27, 392, 597, 629, 657
Tru9I TTAA 5 cut(s) 27, 392, 597, 629, 657
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 4 cut(s) 24, 423, 462, 540
TspRI CASTG 1 cut(s) 736
Tth111I GACNNNGTC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 1 cut(s) 562
XmnI GAANNNNTTC 2 cut(s) 227, 373
XspI CTAG 2 cut(s) 546, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.