Rw1G030290

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003209
Physical Location & Seq
Reverse (-)
58243817 .. 58244992
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030290.1

Sequence Viewer

Length: 825 bp
ATGGCGGTCAATGTTCAAAAGACAAACAGCAAGATGAGCAGTCCTTTGTTCTATGAATTGAAGAAGCAAGCCTCTTCCTTCTTAAAAGAGAAGATCAGAACTGCGCGTTTGGCGCTGACTGATGTAACACCTGCAGAGCTAATGACGGAAGAAGCTACAAATGAAAATTCATGGCCATCAGACACACGTACCATTGGGGTAATATCCAGGGCTGCCTTTGACGTTGATGATTACTGGAGGATTGTGGAGATTCTGCATAGGAGGTTGTCGAACTTTGATAGAAAGAATTGGCGAGGCTCTTACAAGGCTCTAATTCTATTGGAATACCTTCTAAGCCATGGACCATTGAGACTTGCTGAGGAGTTTGAGGTTGATATCGATGTTATCAAGCAGATGGGAAGGTTTCAGCACATTGATGAAAAAGGATTTAACTGGGGCATGAGTGTGAGGAAGTTATCTGATAGAGTGCTCAAGCTTCTTGGAGACACTGTGTTTCTTAAAGAAGAGAGAGCCAGAGCTCGTAATCTAACTCGTGGAATACAAGGGTTCGGGAGCTTCAGTCAGCAGCATTCTCTCACAGATTCAAGCTTCAAGGAGCTATCTCGTAAAACGTATGAGAGGTGCAATTCACACTACACTGATCATCAGAGTCAGGAAGATAAGTCATTTGACTTAAAGGAGAATTTCTTGGTGAAGAAACAACCGCAGATTGGTGATCAAGACATCATTTCATCGAAACCTGAAATGAATCTCAACATAGGGGATCACCCATTTTGCAAGAATGAGCATCAGAGGGAAGAATCCCTTCTTTCTTCTGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

274

Amino Acids

31.84

Weight (kDa)

6.73

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 43 - 163 5.2e-30 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
Acc36I ACCTGC 1 cut(s) 139
AccII CGCG 1 cut(s) 106
AciI CCGC 2 cut(s) 5, 704
AclWI GGATC 1 cut(s) 771
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 2 cut(s) 166, 682
AcuI CTGAAG 1 cut(s) 541
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 710
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 4 cut(s) 17, 61, 585, 592
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 7 cut(s) 139, 155, 475, 518, 555, 588, 598
AluI AGCT 7 cut(s) 139, 155, 475, 518, 555, 588, 598
Alw21I GWGCWC 2 cut(s) 471, 520
Alw26I GTCTC 2 cut(s) 343, 477
AlwI GGATC 1 cut(s) 771
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 212, 565
ApoI RAATTY 2 cut(s) 166, 682
Asp700I GAANNNNTTC 2 cut(s) 327, 804
AspLEI GCGC 2 cut(s) 106, 115
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 703, 725, 758
AvaII GGWCC 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BalI TGGCCA 1 cut(s) 175
BanII GRGCYC 1 cut(s) 520
BauI CACGAG 1 cut(s) 531
Bbv12I GWGCWC 2 cut(s) 471, 520
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 199, 577
BccI CCATC 2 cut(s) 184, 388
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 2 cut(s) 640, 715
BcoDI GTCTC 2 cut(s) 343, 477
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 2 cut(s) 213, 566
BlsI GCNGC 2 cut(s) 214, 567
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 796
BmuI ACTGGG 1 cut(s) 442
BpmI CTGGAG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 455
Bsa29I ATCGAT 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 207, 337
BsaXI ACNNNNNCTCC 4 cut(s) 474, 504, 544, 574
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse1I ACTGG 2 cut(s) 239, 437
BseBI CCWGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 207, 337
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 239, 437
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 2 cut(s) 199, 577
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 2 cut(s) 471, 520
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 2 cut(s) 343, 477
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 471, 520
Bsp143I GATC 4 cut(s) 93, 640, 715, 763
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 2 cut(s) 5, 704
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 349
BspDI ATCGAT 1 cut(s) 378
BspFNI CGCG 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 1 cut(s) 771
BsrI ACTGG 2 cut(s) 239, 437
BssECI CCNNGG 2 cut(s) 207, 337
BssMI GATC 4 cut(s) 93, 640, 715, 763
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 337
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 2 cut(s) 79, 498
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 332, 357
BstDSI CCRYGG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 106, 115
BstKTI GATC 4 cut(s) 96, 643, 718, 766
BstMAI GTCTC 2 cut(s) 343, 477
BstMBI GATC 4 cut(s) 93, 640, 715, 763
BstMWI GCNNNNNNNGC 3 cut(s) 36, 110, 112
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 199, 577
Bsu15I ATCGAT 1 cut(s) 378
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 486, 636
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 2 cut(s) 106, 115
Cfr13I GGNCC 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 378
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 171, 338, 439
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 332, 357
DpnI GATC 4 cut(s) 95, 642, 717, 765
DpnII GATC 4 cut(s) 93, 640, 715, 763
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 2 cut(s) 79, 498
EarI CTCTTC 2 cut(s) 79, 498
Ecl136II GAGCTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 520
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 541
EcoICRI GAGCTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 3 cut(s) 174, 341, 442
FaiI YATR 7 cut(s) 54, 172, 258, 339, 440, 615, 758
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FatI CATG 3 cut(s) 170, 337, 438
FbaI TGATCA 2 cut(s) 640, 715
Fnu4HI GCNGC 2 cut(s) 213, 566
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 2 cut(s) 213, 566
GlaI GCGC 2 cut(s) 105, 114
GluI GCNGC 2 cut(s) 213, 566
GsuI CTGGAG 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 175
HhaI GCGC 2 cut(s) 106, 115
Hin1II CATG 3 cut(s) 174, 341, 442
Hin6I GCGC 2 cut(s) 104, 113
HinP1I GCGC 2 cut(s) 104, 113
HindIII AAGCTT 2 cut(s) 473, 586
HinfI GANTC 5 cut(s) 250, 581, 649, 748, 800
HphI GGTGA 3 cut(s) 703, 725, 758
Hpy188I TCNGA 6 cut(s) 98, 181, 460, 648, 792, 817
Hpy188III TCNNGA 3 cut(s) 550, 653, 719
HpyAV CCTTC 4 cut(s) 88, 338, 393, 815
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 3 cut(s) 187, 222, 611
HpyCH4V TGCA 4 cut(s) 134, 256, 624, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 110, 112
HpyF3I CTNAG 2 cut(s) 332, 357
HpySE526I ACGT 3 cut(s) 187, 222, 611
Hsp92II CATG 3 cut(s) 174, 341, 442
HspAI GCGC 2 cut(s) 104, 113
Ksp22I TGATCA 2 cut(s) 640, 715
Kzo9I GATC 4 cut(s) 93, 640, 715, 763
LmnI GCTCC 2 cut(s) 552, 595
LpnPI CCDG 8 cut(s) 144, 193, 220, 220, 418, 526, 638, 753
Lsp1109I GCAGC 2 cut(s) 199, 577
LweI GCATC 1 cut(s) 796
MaeII ACGT 3 cut(s) 187, 222, 611
MaeIII GTNAC 1 cut(s) 124
MalI GATC 4 cut(s) 95, 642, 717, 765
MboI GATC 4 cut(s) 93, 640, 715, 763
MboII GAAGA 9 cut(s) 66, 73, 103, 161, 515, 668, 706, 804, 809
MhlI GDGCHC 2 cut(s) 471, 520
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 6 cut(s) 56, 166, 286, 312, 625, 682
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 1 cut(s) 658
MnlI CCTC 9 cut(s) 82, 231, 255, 287, 352, 361, 441, 612, 786
Mox20I TGGCCA 1 cut(s) 175
MroXI GAANNNNTTC 2 cut(s) 327, 804
MscI TGGCCA 1 cut(s) 175
MseI TTAA 4 cut(s) 83, 429, 498, 674
MslI CAYNNNNRTG 2 cut(s) 414, 443
Msp20I TGGCCA 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 36, 110, 112
NcoI CCATGG 1 cut(s) 337
NdeII GATC 4 cut(s) 93, 640, 715, 763
NlaIII CATG 3 cut(s) 174, 341, 442
PaqCI CACCTGC 1 cut(s) 139
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 327, 804
PfeI GAWTC 4 cut(s) 250, 581, 748, 800
PkrI GCNGC 2 cut(s) 214, 567
PleI GAGTC 1 cut(s) 657
PpsI GAGTC 1 cut(s) 657
Ppu21I YACGTR 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspPI GGNCC 1 cut(s) 341
PstI CTGCAG 1 cut(s) 136
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 2 cut(s) 414, 443
SacI GAGCTC 1 cut(s) 520
SaqAI TTAA 4 cut(s) 83, 429, 498, 674
SatI GCNGC 2 cut(s) 213, 566
Sau3AI GATC 4 cut(s) 93, 640, 715, 763
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 2 cut(s) 471, 520
SfaNI GCATC 1 cut(s) 796
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 414, 443
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 6 cut(s) 56, 166, 286, 312, 625, 682
SsiI CCGC 2 cut(s) 5, 704
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 3 cut(s) 190, 225, 614
TaqI TCGA 3 cut(s) 269, 378, 734
TasI AATT 6 cut(s) 56, 166, 286, 312, 625, 682
TfiI GAWTC 4 cut(s) 250, 581, 748, 800
Tru1I TTAA 4 cut(s) 83, 429, 498, 674
Tru9I TTAA 4 cut(s) 83, 429, 498, 674
TscAI CASTG 2 cut(s) 493, 643
TseI GCWGC 2 cut(s) 212, 565
TspDTI ATGAA 6 cut(s) 69, 159, 177, 432, 720, 761
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 493, 643
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 2 cut(s) 166, 682
XmnI GAANNNNTTC 2 cut(s) 327, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.